Literature DB >> 30948633

Photocycle-dependent conformational changes in the proteorhodopsin cross-protomer Asp-His-Trp triad revealed by DNP-enhanced MAS-NMR.

Jakob Maciejko1,2, Jagdeep Kaur1,2, Johanna Becker-Baldus1,2, Clemens Glaubitz3,2.   

Abstract

Proteorhodopsin (PR) is a highly abundant, pentameric, light-driven proton pump. Proton transfer is linked to a canonical photocycle typical for microbial ion pumps. Although the PR monomer is able to undergo a full photocycle, the question arises whether the pentameric complex formed in the membrane via specific cross-protomer interactions plays a role in its functional mechanism. Here, we use dynamic nuclear polarization (DNP)-enhanced solid-state magic-angle spinning (MAS) NMR in combination with light-induced cryotrapping of photointermediates to address this topic. The highly conserved residue H75 is located at the protomer interface. We show that it switches from the (τ)- to the (π)-tautomer and changes its ring orientation in the M state. It couples to W34 across the oligomerization interface based on specific His/Trp ring orientations while stabilizing the pKa of the primary proton acceptor D97 within the same protomer. We further show that specific W34 mutations have a drastic effect on D97 and proton transfer mediated through H75. The residue H75 defines a cross-protomer Asp-His-Trp triad, which potentially serves as a pH-dependent regulator for proton transfer. Our data represent light-dependent, functionally relevant cross talk between protomers of a microbial rhodopsin homo-oligomer.

Entities:  

Keywords:  DNP; NMR; oligomer; photocycle; proteorhodopsin

Year:  2019        PMID: 30948633      PMCID: PMC6486740          DOI: 10.1073/pnas.1817665116

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  40 in total

1.  Proteorhodopsin phototrophy in the ocean.

Authors:  O Béjà; E N Spudich; J L Spudich; M Leclerc; E F DeLong
Journal:  Nature       Date:  2001-06-14       Impact factor: 49.962

2.  Proteorhodopsin genes are distributed among divergent marine bacterial taxa.

Authors:  José R de la Torre; Lynne M Christianson; Oded Béjà; Marcelino T Suzuki; David M Karl; John Heidelberg; Edward F DeLong
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-17       Impact factor: 11.205

3.  Proteorhodopsin is a light-driven proton pump with variable vectoriality.

Authors:  Thomas Friedrich; Sven Geibel; Rolf Kalmbach; Igor Chizhov; Kenichi Ataka; Joachim Heberle; Martin Engelhard; Ernst Bamberg
Journal:  J Mol Biol       Date:  2002-08-30       Impact factor: 5.469

4.  Folding and assembly of proteorhodopsin.

Authors:  Adriana L Klyszejko; Sarika Shastri; Stefania A Mari; Helmut Grubmüller; Daniel J Muller; Clemens Glaubitz
Journal:  J Mol Biol       Date:  2007-11-19       Impact factor: 5.469

5.  Mechanism of spectral tuning in green-absorbing proteorhodopsin.

Authors:  Rekha Rangarajan; Jhenny F Galan; Gregg Whited; Robert R Birge
Journal:  Biochemistry       Date:  2007-10-10       Impact factor: 3.162

6.  Identification of histidine tautomers in proteins by 2D 1H/13C(delta2) one-bond correlated NMR.

Authors:  James L Sudmeier; Elizabeth M Bradshaw; Kristin E Coffman Haddad; Regina M Day; Craig J Thalhauser; Peter A Bullock; William W Bachovchin
Journal:  J Am Chem Soc       Date:  2003-07-16       Impact factor: 15.419

7.  3D TEDOR NMR experiments for the simultaneous measurement of multiple carbon-nitrogen distances in uniformly (13)C,(15)N-labeled solids.

Authors:  Christopher P Jaroniec; Claudiu Filip; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2002-09-11       Impact factor: 15.419

8.  Spectroscopic and photochemical characterization of a deep ocean proteorhodopsin.

Authors:  Wei-Wu Wang; Oleg A Sineshchekov; Elena N Spudich; John L Spudich
Journal:  J Biol Chem       Date:  2003-06-23       Impact factor: 5.157

9.  His-75 in proteorhodopsin, a novel component in light-driven proton translocation by primary pumps.

Authors:  Vladislav B Bergo; Oleg A Sineshchekov; Joel M Kralj; Ranga Partha; Elena N Spudich; Kenneth J Rothschild; John L Spudich
Journal:  J Biol Chem       Date:  2008-11-17       Impact factor: 5.157

10.  Three-dimensional solid-state NMR study of a seven-helical integral membrane proton pump--structural insights.

Authors:  Lichi Shi; Mumdooh A M Ahmed; Wurong Zhang; Gregg Whited; Leonid S Brown; Vladimir Ladizhansky
Journal:  J Mol Biol       Date:  2009-03-06       Impact factor: 5.469

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  10 in total

1.  Diversity, Mechanism, and Optogenetic Application of Light-Driven Ion Pump Rhodopsins.

Authors:  Keiichi Inoue
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

2.  Application of millisecond time-resolved solid state NMR to the kinetics and mechanism of melittin self-assembly.

Authors:  Jaekyun Jeon; Kent R Thurber; Rodolfo Ghirlando; Wai-Ming Yau; Robert Tycko
Journal:  Proc Natl Acad Sci U S A       Date:  2019-08-06       Impact factor: 11.205

3.  Solid-State NMR Spectroscopy on Microbial Rhodopsins.

Authors:  Clara Nassrin Kriebel; Johanna Becker-Baldus; Clemens Glaubitz
Journal:  Methods Mol Biol       Date:  2022

4.  HwMR is a novel magnesium-associated protein.

Authors:  Ling-Ning Ko; Guo Zhen Lim; Xiao-Ru Chen; Chun-Jie Cai; Kuang-Ting Liu; Chii-Shen Yang
Journal:  Biophys J       Date:  2022-06-10       Impact factor: 3.699

5.  Probing the photointermediates of light-driven sodium ion pump KR2 by DNP-enhanced solid-state NMR.

Authors:  Orawan Jakdetchai; Peter Eberhardt; Marvin Asido; Jagdeep Kaur; Clara Nassrin Kriebel; Jiafei Mao; Alexander J Leeder; Lynda J Brown; Richard C D Brown; Johanna Becker-Baldus; Christian Bamann; Josef Wachtveitl; Clemens Glaubitz
Journal:  Sci Adv       Date:  2021-03-12       Impact factor: 14.136

6.  Functional importance of the oligomer formation of the cyanobacterial H+ pump Gloeobacter rhodopsin.

Authors:  Azusa Iizuka; Kousuke Kajimoto; Tomotsumi Fujisawa; Takashi Tsukamoto; Tomoyasu Aizawa; Naoki Kamo; Kwang-Hwan Jung; Masashi Unno; Makoto Demura; Takashi Kikukawa
Journal:  Sci Rep       Date:  2019-07-24       Impact factor: 4.379

7.  Cryo-EM structure and dynamics of the green-light absorbing proteorhodopsin.

Authors:  Stephan Hirschi; David Kalbermatter; Zöhre Ucurum; Thomas Lemmin; Dimitrios Fotiadis
Journal:  Nat Commun       Date:  2021-07-05       Impact factor: 14.919

8.  The distance between g-tensors of nitroxide biradicals governs MAS-DNP performance: The case of the bTurea family.

Authors:  Frédéric Mentink-Vigier; Thierry Dubroca; Johan Van Tol; Snorri Th Sigurdsson
Journal:  J Magn Reson       Date:  2021-06-24       Impact factor: 2.734

9.  Dynamic Nuclear Polarization of Biomembrane Assemblies.

Authors:  Nhi T Tran; Frédéric Mentink-Vigier; Joanna R Long
Journal:  Biomolecules       Date:  2020-08-27

10.  Determination of Histidine Protonation States in Proteins by Fast Magic Angle Spinning NMR.

Authors:  Roman Zadorozhnyi; Sucharita Sarkar; Caitlin M Quinn; Kaneil K Zadrozny; Barbie K Ganser-Pornillos; Owen Pornillos; Angela M Gronenborn; Tatyana Polenova
Journal:  Front Mol Biosci       Date:  2021-12-10
  10 in total

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