Literature DB >> 21949551

RNA Granules Living a Post-transcriptional Life: the Trypanosomes' Case.

Alejandro Cassola1.   

Abstract

Trypanosomes are protozoan parasites responsible for recalcitrant infectious diseases such as Sleeping sickness and Chagas disease in Africa and America, respectively. Their complex life-cycles are accompanied by alternation of forms specific of the insect vectors and vertebrate hosts, each with different metabolic and structural requirements. Unlike most other eukaryotes, these single-cell microorganisms seem to control the expression of protein-coding genes mostly by mRNA degradation, silencing and translation efficiency. Recent evidence showed that genuine cytoplasmic Stress Granules are formed as a response to heat stress in Trypanosoma brucei, basically formed by stalled translation initiation complexes on mRNA. On the other hand, Processing bodies (P bodies) are constitutive components of cytoplasmic mRNA metabolism in trypanosomes, which could have an important role in translational repression. During physiological starvation conditions in trypanosomes, components from P bodies fuse with other ribonucleoprotein complexes to form mRNA granules, where transcripts are stored and protected from degradation in a quiescent state. Other novel types of foci with unknown function that are related to RNA metabolism can be found in these parasites, namely heat-induced granules containing the 5' to 3' exoribonuclease XRNA, and starvation-induced granules containing transfer RNA halves. Thus, trypanosomes make use of non-membranous structures as a strategy to compartmentalize ribonucleoprotein complexes in the cytoplasm, aiding to cope with stressful situations avoiding mRNA translation or degradation. The relevance of stress-induced foci in trypanosomes has yet to be scored, although recent evidence suggests that these cytoplasmic organelles are required for survival under adverse growing conditions.

Entities:  

Year:  2011        PMID: 21949551      PMCID: PMC3179377          DOI: 10.2174/2212796811105020108

Source DB:  PubMed          Journal:  Curr Chem Biol        ISSN: 1872-3136


  91 in total

Review 1.  Life without transcriptional control? From fly to man and back again.

Authors:  Christine E Clayton
Journal:  EMBO J       Date:  2002-04-15       Impact factor: 11.598

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Authors:  David A Campbell; Sean Thomas; Nancy R Sturm
Journal:  Microbes Infect       Date:  2003-11       Impact factor: 2.700

Review 3.  trans and cis splicing in trypanosomatids: mechanism, factors, and regulation.

Authors:  Xue-hai Liang; Asaf Haritan; Shai Uliel; Shulamit Michaeli
Journal:  Eukaryot Cell       Date:  2003-10

Review 4.  P bodies: at the crossroads of post-transcriptional pathways.

Authors:  Ana Eulalio; Isabelle Behm-Ansmant; Elisa Izaurralde
Journal:  Nat Rev Mol Cell Biol       Date:  2007-01       Impact factor: 94.444

Review 5.  Post-transcriptional regulation of gene expression in trypanosomes and leishmanias.

Authors:  Christine Clayton; Michal Shapira
Journal:  Mol Biochem Parasitol       Date:  2007-07-19       Impact factor: 1.759

6.  Widespread reorganization of metabolic enzymes into reversible assemblies upon nutrient starvation.

Authors:  Rammohan Narayanaswamy; Matthew Levy; Mark Tsechansky; Gwendolyn M Stovall; Jeremy D O'Connell; Jennifer Mirrielees; Andrew D Ellington; Edward M Marcotte
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-05       Impact factor: 11.205

7.  Binding specificities and potential roles of isoforms of eukaryotic initiation factor 4E in Leishmania.

Authors:  Yael Yoffe; Joanna Zuberek; Asaf Lerer; Magdalena Lewdorowicz; Janusz Stepinski; Michael Altmann; Edward Darzynkiewicz; Michal Shapira
Journal:  Eukaryot Cell       Date:  2006-10-13

8.  Robust heat shock induces eIF2alpha-phosphorylation-independent assembly of stress granules containing eIF3 and 40S ribosomal subunits in budding yeast, Saccharomyces cerevisiae.

Authors:  Tomás Grousl; Pavel Ivanov; Ivana Frýdlová; Pavla Vasicová; Filip Janda; Jana Vojtová; Katerina Malínská; Ivana Malcová; Lenka Nováková; Dana Janosková; Leos Valásek; Jirí Hasek
Journal:  J Cell Sci       Date:  2009-05-26       Impact factor: 5.285

Review 9.  Eukaryotic stress granules: the ins and outs of translation.

Authors:  J Ross Buchan; Roy Parker
Journal:  Mol Cell       Date:  2009-12-25       Impact factor: 17.970

10.  Developmentally regulated cleavage of tRNAs in the bacterium Streptomyces coelicolor.

Authors:  Henry J Haiser; Fedor V Karginov; Gregory J Hannon; Marie A Elliot
Journal:  Nucleic Acids Res       Date:  2007-12-15       Impact factor: 16.971

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  15 in total

Review 1.  Regulation of RNA binding proteins in trypanosomatid protozoan parasites.

Authors:  María Albertina Romaniuk; Gabriela Cervini; Alejandro Cassola
Journal:  World J Biol Chem       Date:  2016-02-26

2.  Interactions between RNA-binding proteins and P32 homologues in trypanosomes and human cells.

Authors:  Juan Manuel Polledo; Gabriela Cervini; María Albertina Romaniuk; Alejandro Cassola
Journal:  Curr Genet       Date:  2015-09-18       Impact factor: 3.886

3.  Novel insights into RNP granules by employing the trypanosome's microtubule skeleton as a molecular sieve.

Authors:  Melanie Fritz; Jens Vanselow; Nadja Sauer; Stephanie Lamer; Carina Goos; T Nicolai Siegel; Ines Subota; Andreas Schlosser; Mark Carrington; Susanne Kramer
Journal:  Nucleic Acids Res       Date:  2015-07-17       Impact factor: 16.971

4.  Leishmania HASP and SHERP Genes Are Required for In Vivo Differentiation, Parasite Transmission and Virulence Attenuation in the Host.

Authors:  Johannes S P Doehl; Jovana Sádlová; Hamide Aslan; Kateřina Pružinová; Sonia Metangmo; Jan Votýpka; Shaden Kamhawi; Petr Volf; Deborah F Smith
Journal:  PLoS Pathog       Date:  2017-01-17       Impact factor: 6.823

5.  Leishmania braziliensis SCD6 and RBP42 proteins, two factors with RNA binding capacity.

Authors:  Paola A Nocua; Cesar A Ramirez; José M Requena; Concepción J Puerta
Journal:  Parasit Vectors       Date:  2017-12-19       Impact factor: 3.876

6.  Insights into the role of endonuclease V in RNA metabolism in Trypanosoma brucei.

Authors:  Daniel García-Caballero; Guiomar Pérez-Moreno; Antonio M Estévez; Luis Miguel Ruíz-Pérez; Antonio E Vidal; Dolores González-Pacanowska
Journal:  Sci Rep       Date:  2017-08-17       Impact factor: 4.379

7.  Nuclear Compartmentalization Contributes to Stage-Specific Gene Expression Control in Trypanosoma cruzi.

Authors:  Lucía Pastro; Pablo Smircich; Andrés Di Paolo; Lorena Becco; María A Duhagon; José Sotelo-Silveira; Beatriz Garat
Journal:  Front Cell Dev Biol       Date:  2017-02-13

Review 8.  High-throughput Methods for Dissection of Trypanosome Gene Regulatory Networks.

Authors:  Esteban D Erben
Journal:  Curr Genomics       Date:  2018-02       Impact factor: 2.236

9.  Trypanosoma brucei PRMT1 Is a Nucleic Acid Binding Protein with a Role in Energy Metabolism and the Starvation Stress Response.

Authors:  Lucie Kafková; Chengjian Tu; Kyle L Pazzo; Kyle P Smith; Erik W Debler; Kimberly S Paul; Jun Qu; Laurie K Read
Journal:  mBio       Date:  2018-12-18       Impact factor: 7.867

10.  mRNA localization mechanisms in Trypanosoma cruzi.

Authors:  Lysangela R Alves; Eloise P Guerra-Slompo; Arthur V de Oliveira; Juliane S Malgarin; Samuel Goldenberg; Bruno Dallagiovanna
Journal:  PLoS One       Date:  2013-12-04       Impact factor: 3.240

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