Literature DB >> 20410310

Kinetic and structural insights into the mechanism of AMPylation by VopS Fic domain.

Phi Luong1, Lisa N Kinch, Chad A Brautigam, Nick V Grishin, Diana R Tomchick, Kim Orth.   

Abstract

The bacterial pathogen Vibrio parahemeolyticus manipulates host signaling pathways during infections by injecting type III effectors into the cytoplasm of the target cell. One of these effectors, VopS, blocks actin assembly by AMPylation of a conserved threonine residue in the switch 1 region of Rho GTPases. The modified GTPases are no longer able to interact with downstream effectors due to steric hindrance by the covalently linked AMP moiety. Herein we analyze the structure of VopS and its evolutionarily conserved catalytic residues. Steady-state analysis of VopS mutants provides kinetic understanding on the functional role of each residue for AMPylation activity by the Fic domain. Further mechanistic analysis of VopS with its two substrates, ATP and Cdc42, demonstrates that VopS utilizes a sequential mechanism to AMPylate Rho GTPases. Discovery of a ternary reaction mechanism along with structural insight provides critical groundwork for future studies for the family of AMPylators that modify hydroxyl-containing residues with AMP.

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Year:  2010        PMID: 20410310      PMCID: PMC2888428          DOI: 10.1074/jbc.M110.114884

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  28 in total

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Journal:  Lancet       Date:  2003-03-01       Impact factor: 79.321

2.  PHENIX: building new software for automated crystallographic structure determination.

Authors:  Paul D Adams; Ralf W Grosse-Kunstleve; Li Wei Hung; Thomas R Ioerger; Airlie J McCoy; Nigel W Moriarty; Randy J Read; James C Sacchettini; Nicholas K Sauter; Thomas C Terwilliger
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-10-21

3.  Substructure solution with SHELXD.

Authors:  Thomas R Schneider; George M Sheldrick
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-09-28

4.  Improved methods for building protein models in electron density maps and the location of errors in these models.

Authors:  T A Jones; J Y Zou; S W Cowan; M Kjeldgaard
Journal:  Acta Crystallogr A       Date:  1991-03-01       Impact factor: 2.290

5.  Mechanism of ubiquitin activation revealed by the structure of a bacterial MoeB-MoaD complex.

Authors:  M W Lake; M M Wuebbens; K V Rajagopalan; H Schindelin
Journal:  Nature       Date:  2001-11-15       Impact factor: 49.962

6.  Kinetic mechanism of the p38-alpha MAP kinase: phosphoryl transfer to synthetic peptides.

Authors:  G Chen; M D Porter; J R Bristol; M J Fitzgibbon; S Pazhanisamy
Journal:  Biochemistry       Date:  2000-02-29       Impact factor: 3.162

7.  Kinetic mechanism of the histone acetyltransferase GCN5 from yeast.

Authors:  K G Tanner; M R Langer; Y Kim; J M Denu
Journal:  J Biol Chem       Date:  2000-07-21       Impact factor: 5.157

8.  Cytotoxicity and enterotoxicity of the thermostable direct hemolysin-deletion mutants of Vibrio parahaemolyticus.

Authors:  Kwon-Sam Park; Takahiro Ono; Mitsuhiro Rokuda; Myoung-Ho Jang; Tetsuya Iida; Takeshi Honda
Journal:  Microbiol Immunol       Date:  2004       Impact factor: 1.955

9.  Multicopy crystallographic refinement of a relaxed glutamine synthetase from Mycobacterium tuberculosis highlights flexible loops in the enzymatic mechanism and its regulation.

Authors:  Harindarpal S Gill; Gaston M U Pfluegl; David Eisenberg
Journal:  Biochemistry       Date:  2002-08-06       Impact factor: 3.162

Review 10.  Tipping the balance by manipulating post-translational modifications.

Authors:  Christopher A Broberg; Kim Orth
Journal:  Curr Opin Microbiol       Date:  2010-01-12       Impact factor: 7.934

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  37 in total

1.  Reversible phosphocholination of Rab proteins by Legionella pneumophila effector proteins.

Authors:  Philip R Goody; Katharina Heller; Lena K Oesterlin; Matthias P Müller; Aymelt Itzen; Roger S Goody
Journal:  EMBO J       Date:  2012-02-03       Impact factor: 11.598

2.  A chemical reporter for protein AMPylation.

Authors:  Markus Grammel; Phi Luong; Kim Orth; Howard C Hang
Journal:  J Am Chem Soc       Date:  2011-10-07       Impact factor: 15.419

3.  Intrinsic regulation of FIC-domain AMP-transferases by oligomerization and automodification.

Authors:  Frédéric V Stanger; Björn M Burmann; Alexander Harms; Hugo Aragão; Adam Mazur; Timothy Sharpe; Christoph Dehio; Sebastian Hiller; Tilman Schirmer
Journal:  Proc Natl Acad Sci U S A       Date:  2016-01-19       Impact factor: 11.205

4.  Characterization of a rabbit polyclonal antibody against threonine-AMPylation.

Authors:  Yi-Heng Hao; Trinette Chuang; Haydn L Ball; Phi Luong; Yan Li; Ruben D Flores-Saaib; Kim Orth
Journal:  J Biotechnol       Date:  2010-12-23       Impact factor: 3.307

5.  Large-scale identification and translocation of type IV secretion substrates by Coxiella burnetii.

Authors:  Chen Chen; Simran Banga; Katja Mertens; Mary M Weber; Ivana Gorbaslieva; Yunhao Tan; Zhao-Qing Luo; James E Samuel
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-23       Impact factor: 11.205

6.  HypE-specific nanobodies as tools to modulate HypE-mediated target AMPylation.

Authors:  Matthias C Truttmann; Qin Wu; Sarah Stiegeler; Joao N Duarte; Jessica Ingram; Hidde L Ploegh
Journal:  J Biol Chem       Date:  2015-02-12       Impact factor: 5.157

7.  Conserved residue His-257 of Vibrio cholerae flavin transferase ApbE plays a critical role in substrate binding and catalysis.

Authors:  Xuan Fang; Jerzy Osipiuk; Srinivas Chakravarthy; Ming Yuan; William M Menzer; Devin Nissen; Pingdong Liang; Daniel A Raba; Karina Tuz; Andrew J Howard; Andrzej Joachimiak; David D L Minh; Oscar Juarez
Journal:  J Biol Chem       Date:  2019-07-26       Impact factor: 5.157

8.  Protein AMPylation by an Evolutionarily Conserved Pseudokinase.

Authors:  Anju Sreelatha; Samantha S Yee; Victor A Lopez; Brenden C Park; Lisa N Kinch; Sylwia Pilch; Kelly A Servage; Junmei Zhang; Jenny Jiou; Monika Karasiewicz-Urbańska; Małgorzata Łobocka; Nick V Grishin; Kim Orth; Roza Kucharczyk; Krzysztof Pawłowski; Diana R Tomchick; Vincent S Tagliabracci
Journal:  Cell       Date:  2018-09-27       Impact factor: 41.582

Review 9.  rAMPing Up Stress Signaling: Protein AMPylation in Metazoans.

Authors:  Matthias C Truttmann; Hidde L Ploegh
Journal:  Trends Cell Biol       Date:  2017-04-19       Impact factor: 20.808

10.  Structural basis of Fic-mediated adenylylation.

Authors:  Junyu Xiao; Carolyn A Worby; Seema Mattoo; Banumathi Sankaran; Jack E Dixon
Journal:  Nat Struct Mol Biol       Date:  2010-07-11       Impact factor: 15.369

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