Literature DB >> 21939287

Bioinformatics and systems biology of the lipidome.

Shankar Subramaniam1, Eoin Fahy, Shakti Gupta, Manish Sud, Robert W Byrnes, Dawn Cotter, Ashok Reddy Dinasarapu, Mano Ram Maurya.   

Abstract

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Year:  2011        PMID： 21939287      PMCID： PMC3383319          DOI： 10.1021/cr200295k

Source DB:  PubMed          Journal:  Chem Rev        ISSN： 0009-2665            Impact factor:   60.622


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  122 in total

1.  KEGG: kyoto encyclopedia of genes and genomes.

Authors:  M Kanehisa; S Goto
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  ML-236A, ML-236B, and ML-236C, new inhibitors of cholesterogenesis produced by Penicillium citrinium.

Authors:  A Endo; M Kuroda; Y Tsujita
Journal:  J Antibiot (Tokyo)       Date:  1976-12       Impact factor: 2.649

3.  Metabolite and isotopomer balancing in the analysis of metabolic cycles: II. Applications.

Authors:  S M Park; M I Klapa; A J Sinskey; G Stephanopoulos
Journal:  Biotechnol Bioeng       Date:  1999-02-20       Impact factor: 4.530

4.  So what have data standards ever done for us? The view from metabolomics.

Authors:  Julian L Griffin; Christoph Steinbeck
Journal:  Genome Med       Date:  2010-06-24       Impact factor: 11.117

5.  Elucidation of gene interaction networks through time-lagged correlation analysis of transcriptional data.

Authors:  William A Schmitt; R Michael Raab; Gregory Stephanopoulos
Journal:  Genome Res       Date:  2004-08       Impact factor: 9.043

Review 6.  RNA-Seq: a revolutionary tool for transcriptomics.

Authors:  Zhong Wang; Mark Gerstein; Michael Snyder
Journal:  Nat Rev Genet       Date:  2009-01       Impact factor: 53.242

7.  The BioPAX community standard for pathway data sharing.

Authors:  Emek Demir; Michael P Cary; Suzanne Paley; Ken Fukuda; Christian Lemer; Imre Vastrik; Guanming Wu; Peter D'Eustachio; Carl Schaefer; Joanne Luciano; Frank Schacherer; Irma Martinez-Flores; Zhenjun Hu; Veronica Jimenez-Jacinto; Geeta Joshi-Tope; Kumaran Kandasamy; Alejandra C Lopez-Fuentes; Huaiyu Mi; Elgar Pichler; Igor Rodchenkov; Andrea Splendiani; Sasha Tkachev; Jeremy Zucker; Gopal Gopinath; Harsha Rajasimha; Ranjani Ramakrishnan; Imran Shah; Mustafa Syed; Nadia Anwar; Ozgün Babur; Michael Blinov; Erik Brauner; Dan Corwin; Sylva Donaldson; Frank Gibbons; Robert Goldberg; Peter Hornbeck; Augustin Luna; Peter Murray-Rust; Eric Neumann; Oliver Ruebenacker; Oliver Reubenacker; Matthias Samwald; Martijn van Iersel; Sarala Wimalaratne; Keith Allen; Burk Braun; Michelle Whirl-Carrillo; Kei-Hoi Cheung; Kam Dahlquist; Andrew Finney; Marc Gillespie; Elizabeth Glass; Li Gong; Robin Haw; Michael Honig; Olivier Hubaut; David Kane; Shiva Krupa; Martina Kutmon; Julie Leonard; Debbie Marks; David Merberg; Victoria Petri; Alex Pico; Dean Ravenscroft; Liya Ren; Nigam Shah; Margot Sunshine; Rebecca Tang; Ryan Whaley; Stan Letovksy; Kenneth H Buetow; Andrey Rzhetsky; Vincent Schachter; Bruno S Sobral; Ugur Dogrusoz; Shannon McWeeney; Mirit Aladjem; Ewan Birney; Julio Collado-Vides; Susumu Goto; Michael Hucka; Nicolas Le Novère; Natalia Maltsev; Akhilesh Pandey; Paul Thomas; Edgar Wingender; Peter D Karp; Chris Sander; Gary D Bader
Journal:  Nat Biotechnol       Date:  2010-09-09       Impact factor: 54.908

8.  GlycomeDB--a unified database for carbohydrate structures.

Authors:  René Ranzinger; Stephan Herget; Claus-Wilhelm von der Lieth; Martin Frank
Journal:  Nucleic Acids Res       Date:  2010-11-02       Impact factor: 16.971

9.  InChI, the IUPAC International Chemical Identifier.

Authors:  Stephen R Heller; Alan McNaught; Igor Pletnev; Stephen Stein; Dmitrii Tchekhovskoi
Journal:  J Cheminform       Date:  2015-05-30       Impact factor: 5.514

10.  VANTED: a system for advanced data analysis and visualization in the context of biological networks.

Authors:  Björn H Junker; Christian Klukas; Falk Schreiber
Journal:  BMC Bioinformatics       Date:  2006-03-06       Impact factor: 3.169
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  35 in total

1.  Lipidomics technologies at the end of the first decade and the beginning of the next.

Authors:  Alfred H Merrill; Edward A Dennis; Jeffrey G McDonald; Eoin Fahy
Journal:  Adv Nutr       Date:  2013-09-01       Impact factor: 8.701

2.  Early lipid changes in acute kidney injury using SWATH lipidomics coupled with MALDI tissue imaging.

Authors:  Sangeetha Rao; Kelly B Walters; Landon Wilson; Bo Chen; Subhashini Bolisetty; David Graves; Stephen Barnes; Anupam Agarwal; Janusz H Kabarowski
Journal:  Am J Physiol Renal Physiol       Date:  2016-02-24

Review 3.  Bioanalysis of eukaryotic organelles.

Authors:  Chad P Satori; Michelle M Henderson; Elyse A Krautkramer; Vratislav Kostal; Mark D Distefano; Mark M Distefano; Edgar A Arriaga
Journal:  Chem Rev       Date:  2013-04-10       Impact factor: 60.622

Review 4.  Lipidomics: when apocrypha becomes canonical.

Authors:  H Alex Brown
Journal:  Curr Opin Chem Biol       Date:  2012-02-28       Impact factor: 8.822

Review 5.  Liposomes in tissue engineering and regenerative medicine.

Authors:  Nelson Monteiro; Albino Martins; Rui L Reis; Nuno M Neves
Journal:  J R Soc Interface       Date:  2014-12-06       Impact factor: 4.118

6.  Tracing sources of carbon and hydrogen to stored lipids in migratory passerines using stable isotope (δ13C, δ2H) measurements.

Authors:  Libesha Anparasan; Keith A Hobson
Journal:  Oecologia       Date:  2021-01-03       Impact factor: 3.225

7.  The lipidome in major depressive disorder: Shared genetic influence for ether-phosphatidylcholines, a plasma-based phenotype related to inflammation, and disease risk.

Authors:  E E M Knowles; K Huynh; P J Meikle; H H H Göring; R L Olvera; S R Mathias; R Duggirala; L Almasy; J Blangero; J E Curran; D C Glahn
Journal:  Eur Psychiatry       Date:  2017-02-21       Impact factor: 5.361

8.  Ultrahigh-Performance capillary liquid chromatography-mass spectrometry at 35 kpsi for separation of lipids.

Authors:  Matthew J Sorensen; Kelsey E Miller; James W Jorgenson; Robert T Kennedy
Journal:  J Chromatogr A       Date:  2019-09-26       Impact factor: 4.759

9.  Modeling of eicosanoid fluxes reveals functional coupling between cyclooxygenases and terminal synthases.

Authors:  Yasuyuki Kihara; Shakti Gupta; Mano R Maurya; Aaron Armando; Ishita Shah; Oswald Quehenberger; Christopher K Glass; Edward A Dennis; Shankar Subramaniam
Journal:  Biophys J       Date:  2014-02-18       Impact factor: 4.033

10.  Analysis of inflammatory and lipid metabolic networks across RAW264.7 and thioglycolate-elicited macrophages.

Authors:  Mano R Maurya; Shakti Gupta; Xiang Li; Eoin Fahy; Ashok R Dinasarapu; Manish Sud; H Alex Brown; Christopher K Glass; Robert C Murphy; David W Russell; Edward A Dennis; Shankar Subramaniam
Journal:  J Lipid Res       Date:  2013-06-17       Impact factor: 5.922
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