Literature DB >> 21937992

Deep sequencing reveals 50 novel genes for recessive cognitive disorders.

Hossein Najmabadi1, Hao Hu, Masoud Garshasbi, Tomasz Zemojtel, Seyedeh Sedigheh Abedini, Wei Chen, Masoumeh Hosseini, Farkhondeh Behjati, Stefan Haas, Payman Jamali, Agnes Zecha, Marzieh Mohseni, Lucia Püttmann, Leyla Nouri Vahid, Corinna Jensen, Lia Abbasi Moheb, Melanie Bienek, Farzaneh Larti, Ines Mueller, Robert Weissmann, Hossein Darvish, Klaus Wrogemann, Valeh Hadavi, Bettina Lipkowitz, Sahar Esmaeeli-Nieh, Dagmar Wieczorek, Roxana Kariminejad, Saghar Ghasemi Firouzabadi, Monika Cohen, Zohreh Fattahi, Imma Rost, Faezeh Mojahedi, Christoph Hertzberg, Atefeh Dehghan, Anna Rajab, Mohammad Javad Soltani Banavandi, Julia Hoffer, Masoumeh Falah, Luciana Musante, Vera Kalscheuer, Reinhard Ullmann, Andreas Walter Kuss, Andreas Tzschach, Kimia Kahrizi, H Hilger Ropers.   

Abstract

Common diseases are often complex because they are genetically heterogeneous, with many different genetic defects giving rise to clinically indistinguishable phenotypes. This has been amply documented for early-onset cognitive impairment, or intellectual disability, one of the most complex disorders known and a very important health care problem worldwide. More than 90 different gene defects have been identified for X-chromosome-linked intellectual disability alone, but research into the more frequent autosomal forms of intellectual disability is still in its infancy. To expedite the molecular elucidation of autosomal-recessive intellectual disability, we have now performed homozygosity mapping, exon enrichment and next-generation sequencing in 136 consanguineous families with autosomal-recessive intellectual disability from Iran and elsewhere. This study, the largest published so far, has revealed additional mutations in 23 genes previously implicated in intellectual disability or related neurological disorders, as well as single, probably disease-causing variants in 50 novel candidate genes. Proteins encoded by several of these genes interact directly with products of known intellectual disability genes, and many are involved in fundamental cellular processes such as transcription and translation, cell-cycle control, energy metabolism and fatty-acid synthesis, which seem to be pivotal for normal brain development and function.

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Year:  2011        PMID: 21937992     DOI: 10.1038/nature10423

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  43 in total

1.  Mutations in SYNGAP1 in autosomal nonsyndromic mental retardation.

Authors:  Fadi F Hamdan; Julie Gauthier; Dan Spiegelman; Anne Noreau; Yan Yang; Stéphanie Pellerin; Sylvia Dobrzeniecka; Mélanie Côté; Elizabeth Perreau-Linck; Elizabeth Perreault-Linck; Lionel Carmant; Guy D'Anjou; Eric Fombonne; Anjene M Addington; Judith L Rapoport; Lynn E Delisi; Marie-Odile Krebs; Faycal Mouaffak; Ridha Joober; Laurent Mottron; Pierre Drapeau; Claude Marineau; Ronald G Lafrenière; Jean Claude Lacaille; Guy A Rouleau; Jacques L Michaud
Journal:  N Engl J Med       Date:  2009-02-05       Impact factor: 91.245

2.  Oligophrenin-1 encodes a rhoGAP protein involved in X-linked mental retardation.

Authors:  P Billuart; T Bienvenu; N Ronce; V des Portes; M C Vinet; R Zemni; H Roest Crollius; A Carrié; F Fauchereau; M Cherry; S Briault; B Hamel; J P Fryns; C Beldjord; A Kahn; C Moraine; J Chelly
Journal:  Nature       Date:  1998-04-30       Impact factor: 49.962

3.  A defect in the ionotropic glutamate receptor 6 gene (GRIK2) is associated with autosomal recessive mental retardation.

Authors:  Mohammad Mahdi Motazacker; Benjamin Rainer Rost; Tim Hucho; Masoud Garshasbi; Kimia Kahrizi; Reinhard Ullmann; Seyedeh Sedigheh Abedini; Sahar Esmaeeli Nieh; Saeid Hosseini Amini; Chandan Goswami; Andreas Tzschach; Lars Riff Jensen; Dietmar Schmitz; Hans Hilger Ropers; Hossein Najmabadi; Andreas Walter Kuss
Journal:  Am J Hum Genet       Date:  2007-08-31       Impact factor: 11.025

4.  Mutation of the conserved polyadenosine RNA binding protein, ZC3H14/dNab2, impairs neural function in Drosophila and humans.

Authors:  Changhui Pak; Masoud Garshasbi; Kimia Kahrizi; Christina Gross; Luciano H Apponi; John J Noto; Seth M Kelly; Sara W Leung; Andreas Tzschach; Farkhondeh Behjati; Seyedeh Sedigheh Abedini; Marzieh Mohseni; Lars R Jensen; Hao Hu; Brenda Huang; Sara N Stahley; Guanglu Liu; Kathryn R Williams; Sharon Burdick; Yue Feng; Subhabrata Sanyal; Gary J Bassell; Hans-Hilger Ropers; Hossein Najmabadi; Anita H Corbett; Kenneth H Moberg; Andreas W Kuss
Journal:  Proc Natl Acad Sci U S A       Date:  2011-07-06       Impact factor: 11.205

5.  A genetic screen identifies the Triple T complex required for DNA damage signaling and ATM and ATR stability.

Authors:  Kristen E Hurov; Cecilia Cotta-Ramusino; Stephen J Elledge
Journal:  Genes Dev       Date:  2010-09-01       Impact factor: 11.361

6.  Adaptor protein complex 4 deficiency causes severe autosomal-recessive intellectual disability, progressive spastic paraplegia, shy character, and short stature.

Authors:  Rami Abou Jamra; Orianne Philippe; Annick Raas-Rothschild; Sebastian H Eck; Elisabeth Graf; Rebecca Buchert; Guntram Borck; Arif Ekici; Felix F Brockschmidt; Markus M Nöthen; Arnold Munnich; Tim M Strom; Andre Reis; Laurence Colleaux
Journal:  Am J Hum Genet       Date:  2011-05-27       Impact factor: 11.025

7.  A PEX6-defective peroxisomal biogenesis disorder with severe phenotype in an infant, versus mild phenotype resembling Usher syndrome in the affected parents.

Authors:  Annick Raas-Rothschild; Ronald J A Wanders; Petra A W Mooijer; Jeannette Gootjes; Hans R Waterham; Alisa Gutman; Yasuyuki Suzuki; Nobuyuki Shimozawa; Naomi Kondo; Gideon Eshel; Marc Espeel; Frank Roels; Stanley H Korman
Journal:  Am J Hum Genet       Date:  2002-02-28       Impact factor: 11.025

8.  Identification of mutations in TRAPPC9, which encodes the NIK- and IKK-beta-binding protein, in nonsyndromic autosomal-recessive mental retardation.

Authors:  Asif Mir; Liana Kaufman; Abdul Noor; Mahdi M Motazacker; Talal Jamil; Matloob Azam; Kimia Kahrizi; Muhammad Arshad Rafiq; Rosanna Weksberg; Tanveer Nasr; Farooq Naeem; Andreas Tzschach; Andreas W Kuss; Gisele E Ishak; Dan Doherty; H Hilger Ropers; A James Barkovich; Hossein Najmabadi; Muhammad Ayub; John B Vincent
Journal:  Am J Hum Genet       Date:  2009-12       Impact factor: 11.025

9.  Disruption of PC1/3 expression in mice causes dwarfism and multiple neuroendocrine peptide processing defects.

Authors:  Xiaorong Zhu; An Zhou; Arunangsu Dey; Christina Norrbom; Raymond Carroll; Chunling Zhang; Virginie Laurent; Iris Lindberg; Randi Ugleholdt; Jens J Holst; Donald F Steiner
Journal:  Proc Natl Acad Sci U S A       Date:  2002-07-26       Impact factor: 11.205

10.  Identification of a nonsense mutation in the very low-density lipoprotein receptor gene (VLDLR) in an Iranian family with dysequilibrium syndrome.

Authors:  Lia Abbasi Moheb; Andreas Tzschach; Masoud Garshasbi; Kimia Kahrizi; Hossein Darvish; Yaser Heshmati; Alireza Kordi; Hossein Najmabadi; Hans Hilger Ropers; Andreas Walter Kuss
Journal:  Eur J Hum Genet       Date:  2007-11-28       Impact factor: 4.246

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  355 in total

1.  Haploinsufficiency of ARID1B, a member of the SWI/SNF-a chromatin-remodeling complex, is a frequent cause of intellectual disability.

Authors:  Juliane Hoyer; Arif B Ekici; Sabine Endele; Bernt Popp; Christiane Zweier; Antje Wiesener; Eva Wohlleber; Andreas Dufke; Eva Rossier; Corinna Petsch; Markus Zweier; Ina Göhring; Alexander M Zink; Gudrun Rappold; Evelin Schröck; Dagmar Wieczorek; Olaf Riess; Hartmut Engels; Anita Rauch; André Reis
Journal:  Am J Hum Genet       Date:  2012-03-09       Impact factor: 11.025

Review 2.  Genetic [corrected] insights into the causes and classification of [corrected] cerebral palsies.

Authors:  Andres Moreno-De-Luca; David H Ledbetter; Christa L Martin
Journal:  Lancet Neurol       Date:  2012-01-18       Impact factor: 44.182

Review 3.  CNVs: harbingers of a rare variant revolution in psychiatric genetics.

Authors:  Dheeraj Malhotra; Jonathan Sebat
Journal:  Cell       Date:  2012-03-16       Impact factor: 41.582

4.  On the future of genetic risk assessment.

Authors:  Hans-Hilger Ropers
Journal:  J Community Genet       Date:  2012-04-01

5.  Human disease: Huge boost for genetics of cognitive disorders.

Authors:  Tanita Casci
Journal:  Nat Rev Genet       Date:  2011-09-27       Impact factor: 53.242

6.  Family-based association studies for next-generation sequencing.

Authors:  Yun Zhu; Momiao Xiong
Journal:  Am J Hum Genet       Date:  2012-06-08       Impact factor: 11.025

7.  Integrating structural and evolutionary data to interpret variation and pathogenicity in adapter protein complex 4.

Authors:  John E Gadbery; Abin Abraham; Carli D Needle; Christopher Moth; Jonathan Sheehan; John A Capra; Lauren P Jackson
Journal:  Protein Sci       Date:  2020-04-25       Impact factor: 6.725

8.  Mutations in PGAP3 impair GPI-anchor maturation, causing a subtype of hyperphosphatasia with mental retardation.

Authors:  Malcolm F Howard; Yoshiko Murakami; Alistair T Pagnamenta; Cornelia Daumer-Haas; Björn Fischer; Jochen Hecht; David A Keays; Samantha J L Knight; Uwe Kölsch; Ulrike Krüger; Steffen Leiz; Yusuke Maeda; Daphne Mitchell; Stefan Mundlos; John A Phillips; Peter N Robinson; Usha Kini; Jenny C Taylor; Denise Horn; Taroh Kinoshita; Peter M Krawitz
Journal:  Am J Hum Genet       Date:  2014-01-16       Impact factor: 11.025

9.  BGP-15 prevents the death of neurons in a mouse model of familial dysautonomia.

Authors:  Sarah B Ohlen; Magdalena L Russell; Michael J Brownstein; Frances Lefcort
Journal:  Proc Natl Acad Sci U S A       Date:  2017-04-24       Impact factor: 11.205

10.  Biallelic variants in FBXL3 cause intellectual disability, delayed motor development and short stature.

Authors:  Muhammad Ansar; Sohail Aziz Paracha; Alessandro Serretti; Muhammad T Sarwar; Jamshed Khan; Emmanuelle Ranza; Emilie Falconnet; Justyna Iwaszkiewicz; Sayyed Fahim Shah; Azhar Ali Qaisar; Federico A Santoni; Vincent Zoete; Andre Megarbane; Jawad Ahmed; Roberto Colombo; Periklis Makrythanasis; Stylianos E Antonarakis
Journal:  Hum Mol Genet       Date:  2019-03-15       Impact factor: 6.150

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