Literature DB >> 21936505

Nanodiscs versus macrodiscs for NMR of membrane proteins.

Sang Ho Park1, Sabrina Berkamp, Gabriel A Cook, Michelle K Chan, Hector Viadiu, Stanley J Opella.   

Abstract

It is challenging to find membrane mimics that stabilize the native structures, dynamics, and functions of membrane proteins. In a recent advance, nanodiscs have been shown to provide a bilayer environment compatible with solution NMR. We show that increasing the lipid to "belt" peptide ratio expands their diameter, slows their reorientation rate, and allows the protein-containing discs to be aligned in a magnetic field for oriented sample solid-state NMR. The spectroscopic properties of membrane proteins with one to seven transmembrane helices in q = 0.1 isotropic bicelles, ~10 nm diameter isotropic nanodiscs, ~30 nm diameter magnetically aligned macrodiscs, and q = 5 magnetically aligned bicelles are compared.

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Year:  2011        PMID: 21936505      PMCID: PMC3236031          DOI: 10.1021/bi201289c

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  24 in total

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Authors:  Salem Faham; James U Bowie
Journal:  J Mol Biol       Date:  2002-02-08       Impact factor: 5.469

2.  Isotropic solutions of phospholipid bicelles: a new membrane mimetic for high-resolution NMR studies of polypeptides.

Authors:  R R Vold; R S Prosser; A J Deese
Journal:  J Biomol NMR       Date:  1997-04       Impact factor: 2.835

3.  High-resolution NMR spectroscopy of membrane proteins in aligned bicelles.

Authors:  Anna A De Angelis; Alexander A Nevzorov; Sang Ho Park; Stanley C Howell; Anthony A Mrse; Stanley J Opella
Journal:  J Am Chem Soc       Date:  2004-12-01       Impact factor: 15.419

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Authors:  E M Landau; J P Rosenbusch
Journal:  Proc Natl Acad Sci U S A       Date:  1996-12-10       Impact factor: 11.205

5.  fd coat protein structure in membrane environments.

Authors:  P A McDonnell; K Shon; Y Kim; S J Opella
Journal:  J Mol Biol       Date:  1993-10-05       Impact factor: 5.469

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Journal:  Biochem Biophys Res Commun       Date:  1980-01-29       Impact factor: 3.575

7.  NMR structural analysis of a membrane protein: bacteriorhodopsin peptide backbone orientation and motion.

Authors:  B A Lewis; G S Harbison; J Herzfeld; R G Griffin
Journal:  Biochemistry       Date:  1985-08-13       Impact factor: 3.162

8.  Direct measurement of distances and angles in biomolecules by NMR in a dilute liquid crystalline medium.

Authors:  N Tjandra; A Bax
Journal:  Science       Date:  1997-11-07       Impact factor: 47.728

9.  Studies of synthetic peptide analogs of the amphipathic helix. Structure of complexes with dimyristoyl phosphatidylcholine.

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Journal:  J Biol Chem       Date:  1985-08-25       Impact factor: 5.157

10.  Directed self-assembly of monodisperse phospholipid bilayer Nanodiscs with controlled size.

Authors:  I G Denisov; Y V Grinkova; A A Lazarides; S G Sligar
Journal:  J Am Chem Soc       Date:  2004-03-24       Impact factor: 15.419

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  36 in total

1.  Bioinspired, Size-Tunable Self-Assembly of Polymer-Lipid Bilayer Nanodiscs.

Authors:  Thirupathi Ravula; Sudheer Kumar Ramadugu; Giacomo Di Mauro; Ayyalusamy Ramamoorthy
Journal:  Angew Chem Int Ed Engl       Date:  2017-08-10       Impact factor: 15.336

2.  Characterizing the structure of lipodisq nanoparticles for membrane protein spectroscopic studies.

Authors:  Rongfu Zhang; Indra D Sahu; Lishan Liu; Anna Osatuke; Raven G Comer; Carole Dabney-Smith; Gary A Lorigan
Journal:  Biochim Biophys Acta       Date:  2014-05-20

3.  BcsA and BcsB form the catalytically active core of bacterial cellulose synthase sufficient for in vitro cellulose synthesis.

Authors:  Okako Omadjela; Adishesh Narahari; Joanna Strumillo; Hugo Mélida; Olga Mazur; Vincent Bulone; Jochen Zimmer
Journal:  Proc Natl Acad Sci U S A       Date:  2013-10-14       Impact factor: 11.205

4.  Optimization of the design and preparation of nanoscale phospholipid bilayers for its application to solution NMR.

Authors:  Robbins Puthenveetil; Olga Vinogradova
Journal:  Proteins       Date:  2013-04-10

5.  Influence of the lipid membrane environment on structure and activity of the outer membrane protein Ail from Yersinia pestis.

Authors:  Yi Ding; L Miya Fujimoto; Yong Yao; Gregory V Plano; Francesca M Marassi
Journal:  Biochim Biophys Acta       Date:  2014-11-27

6.  The development of solid-state NMR of membrane proteins.

Authors:  Stanley J Opella
Journal:  Biomed Spectrosc Imaging       Date:  2014

7.  Spontaneous Lipid Nanodisc Fomation by Amphiphilic Polymethacrylate Copolymers.

Authors:  Kazuma Yasuhara; Jin Arakida; Thirupathi Ravula; Sudheer Kumar Ramadugu; Bikash Sahoo; Jun-Ichi Kikuchi; Ayyalusamy Ramamoorthy
Journal:  J Am Chem Soc       Date:  2017-12-05       Impact factor: 15.419

8.  Solid-state NMR and membrane proteins.

Authors:  Stanley J Opella
Journal:  J Magn Reson       Date:  2014-12-29       Impact factor: 2.229

9.  Folding of the β-Barrel Membrane Protein OmpA into Nanodiscs.

Authors:  DeeAnn K Asamoto; Guipeun Kang; Judy E Kim
Journal:  Biophys J       Date:  2019-11-28       Impact factor: 4.033

Review 10.  Solution NMR: A powerful tool for structural and functional studies of membrane proteins in reconstituted environments.

Authors:  Robbins Puthenveetil; Olga Vinogradova
Journal:  J Biol Chem       Date:  2019-09-24       Impact factor: 5.157

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