Literature DB >> 23436707

Optimization of the design and preparation of nanoscale phospholipid bilayers for its application to solution NMR.

Robbins Puthenveetil1, Olga Vinogradova.   

Abstract

Despite arduous efforts and recent technological developments structural investigation of integral membrane proteins remains a challenge. The primary deterrents include difficulties with their expression, low inherent solubility, and problems associated with existing membrane mimicking systems. A relatively new class of membrane mimetics, nanodiscs, is emerging as a promising alternative. Although nanodiscs have been proven successful for several biophysical applications, they yet remain to become the system of preferred choice for structure determination. We have hereby made nanodiscs more suitable for solution NMR applications by reducing the diameter of the self-assembly complex to its potential limit. We achieved a noticeable improvement in the quality of NMR spectra obtained for the transmembrane and cytoplasmic domains of integrin αIIb incorporated into these smaller discs rendering them susceptible for a thorough structural investigation. In addition, we also present an on-column method for a rapid, efficient, single-step preparation of protein incorporated nanodiscs at high concentrations. These discs have been fully characterized by transmission electron microscopy, dynamic light scattering, and differential scanning calorimetry.
Copyright © 2013 Wiley Periodicals, Inc.

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Year:  2013        PMID: 23436707      PMCID: PMC5051544          DOI: 10.1002/prot.24271

Source DB:  PubMed          Journal:  Proteins        ISSN: 0887-3585


  28 in total

1.  G-protein-coupled receptors: new approaches to maximise the impact of GPCRS in drug discovery.

Authors:  John Davey
Journal:  Expert Opin Ther Targets       Date:  2004-04       Impact factor: 6.902

2.  Assembly of single bacteriorhodopsin trimers in bilayer nanodiscs.

Authors:  Timothy H Bayburt; Yelena V Grinkova; Stephen G Sligar
Journal:  Arch Biochem Biophys       Date:  2006-03-29       Impact factor: 4.013

Review 3.  The nanodisc: a novel tool for membrane protein studies.

Authors:  Jonas Borch; Thomas Hamann
Journal:  Biol Chem       Date:  2009-08       Impact factor: 3.915

4.  Particle size determination using TEM: a discussion of image acquisition and analysis for the novice microscopist.

Authors:  William D Pyrz; Douglas J Buttrey
Journal:  Langmuir       Date:  2008-08-26       Impact factor: 3.882

5.  Core unit of chemotaxis signaling complexes.

Authors:  Mingshan Li; Gerald L Hazelbauer
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-23       Impact factor: 11.205

6.  Lipid-protein nanodiscs for cell-free production of integral membrane proteins in a soluble and folded state: comparison with detergent micelles, bicelles and liposomes.

Authors:  E N Lyukmanova; Z O Shenkarev; N F Khabibullina; G S Kopeina; M A Shulepko; A S Paramonov; K S Mineev; R V Tikhonov; L N Shingarova; L E Petrovskaya; D A Dolgikh; A S Arseniev; M P Kirpichnikov
Journal:  Biochim Biophys Acta       Date:  2011-10-26

Review 7.  Comprehensive evaluation of solution nuclear magnetic resonance spectroscopy sample preparation for helical integral membrane proteins.

Authors:  Richard C Page; Jacob D Moore; Hau B Nguyen; Mukesh Sharma; Rose Chase; Fei Philip Gao; Charles K Mobley; Charles R Sanders; Liping Ma; Frank D Sönnichsen; Sangwon Lee; Stanley C Howell; Stanley J Opella; Timothy A Cross
Journal:  J Struct Funct Genomics       Date:  2006-07-19

Review 8.  Membrane protein assembly into Nanodiscs.

Authors:  Timothy H Bayburt; Stephen G Sligar
Journal:  FEBS Lett       Date:  2009-10-16       Impact factor: 4.124

9.  Phospholipid phase transitions in homogeneous nanometer scale bilayer discs.

Authors:  Andrew W Shaw; Mark A McLean; Stephen G Sligar
Journal:  FEBS Lett       Date:  2004-01-02       Impact factor: 4.124

10.  Mapping the human membrane proteome: a majority of the human membrane proteins can be classified according to function and evolutionary origin.

Authors:  Markus Sällman Almén; Karl J V Nordström; Robert Fredriksson; Helgi B Schiöth
Journal:  BMC Biol       Date:  2009-08-13       Impact factor: 7.431

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  15 in total

1.  The butyrophilin 3A1 intracellular domain undergoes a conformational change involving the juxtamembrane region.

Authors:  Khiem Nguyen; Jin Li; Robbins Puthenveetil; Xiaochen Lin; Michael M Poe; Chia-Hung Christine Hsiao; Olga Vinogradova; Andrew J Wiemer
Journal:  FASEB J       Date:  2017-07-13       Impact factor: 5.191

Review 2.  Nanodiscs in Membrane Biochemistry and Biophysics.

Authors:  Ilia G Denisov; Stephen G Sligar
Journal:  Chem Rev       Date:  2017-02-08       Impact factor: 60.622

3.  NMR analysis of free and lipid nanodisc anchored CEACAM1 membrane proximal peptides with Ca2+/CaM.

Authors:  Haike Ghazarian; Weidong Hu; Allen Mao; Tung Nguyen; Nagarajan Vaidehi; Stephen Sligar; John E Shively
Journal:  Biochim Biophys Acta Biomembr       Date:  2019-01-10       Impact factor: 3.747

4.  Nanodiscs: A Controlled Bilayer Surface for the Study of Membrane Proteins.

Authors:  Mark A McLean; Michael C Gregory; Stephen G Sligar
Journal:  Annu Rev Biophys       Date:  2018-03-01       Impact factor: 12.981

Review 5.  Solution NMR: A powerful tool for structural and functional studies of membrane proteins in reconstituted environments.

Authors:  Robbins Puthenveetil; Olga Vinogradova
Journal:  J Biol Chem       Date:  2019-09-24       Impact factor: 5.157

6.  Nanodiscs and Solution NMR: preparation, application and challenges.

Authors:  Robbins Puthenveetil; Khiem Nguyen; Olga Vinogradova
Journal:  Nanotechnol Rev       Date:  2016-12-15       Impact factor: 7.848

7.  Interaction of KRas4b with anionic membranes: A special role for PIP2.

Authors:  Michael C Gregory; Mark A McLean; Stephen G Sligar
Journal:  Biochem Biophys Res Commun       Date:  2017-04-13       Impact factor: 3.575

8.  Facile production of tagless membrane scaffold protein for nanodiscs.

Authors:  Jeffrey A Julien; Sarah G Mutchek; Martin G Fernandez; Kerney Jebrell Glover
Journal:  Anal Biochem       Date:  2021-11-27       Impact factor: 3.365

9.  A Minimal Functional Complex of Cytochrome P450 and FBD of Cytochrome P450 Reductase in Nanodiscs.

Authors:  Elke Prade; Mukesh Mahajan; Sang-Choul Im; Meng Zhang; Katherine A Gentry; G M Anantharamaiah; Lucy Waskell; Ayyalusamy Ramamoorthy
Journal:  Angew Chem Int Ed Engl       Date:  2018-06-14       Impact factor: 15.336

10.  High production of bacteriorhodopsin from wild type Halobacterium salinarum.

Authors:  Mansooreh-Sadat Seyedkarimi; Asieh Aramvash; Rohollah Ramezani
Journal:  Extremophiles       Date:  2015-08-09       Impact factor: 2.395

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