Literature DB >> 21922277

The use of 1H-31P GHMBC and covariance NMR to unambiguously determine phosphate ester linkages in complex polysaccharide mixtures.

Edward R Zartler1, Gary E Martin.   

Abstract

Poly- and oligo-saccharides are commonly employed as antigens in many vaccines. These antigens contain phosphoester structural elements that are crucial to the antigenicity, and hence the effectiveness of the vaccine. Nuclear Magnetic Resonance (NMR) is a powerful tool for the site-specific identification of phosphoesters in saccharides. We describe here two advances in the characterization of phosphoesters in saccharides: (1) the use of (1)H-(31)P GHMBC to determine the site-specific identity of phosphoester moieties in heterogeneous mixtures and (2) the use of Unsymmetrical/Generalized Indirect Covariance (U/GIC) to calculate a carbon-phosphorus 2D spectrum. The sensitivity of the (1)H-(31)P GHMBC is far greater than the "standard" (1)H-(31)P GHSQC and allows long-range (3-5)J(HP) couplings to be readily detected. This is the first example to be reported of using U/GIC to calculate a carbon-phosphorus spectrum. The U/GIC processing affords, in many cases, a fivefold to tenfold or greater increase in signal-to-noise ratios in the calculated spectrum. When coupled with the high sensitivity of (1)H-(31)P HMBC, U/GIC processing allows the complete and unambiguous assignments of phosphoester moieties present in heterogeneous samples at levels of ~5% (or less) of the total sample, expanding the breadth of samples that NMR can be used to analyze. This new analytical technique is generally applicable to any NMR-observable phosphoester. © Springer Science+Business Media B.V. 2011

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 21922277     DOI: 10.1007/s10858-011-9563-8

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  29 in total

1.  Molecular structure of nucleic acids; a structure for deoxyribose nucleic acid.

Authors:  J D WATSON; F H CRICK
Journal:  Nature       Date:  1953-04-25       Impact factor: 49.962

2.  H(C)P and H(P)C triple-resonance experiments at natural abundance employing long-range couplings.

Authors:  Michal Malon; Hiroyuki Koshino
Journal:  Magn Reson Chem       Date:  2007-09       Impact factor: 2.447

3.  HSQC-ADEQUATE correlation: a new paradigm for establishing a molecular skeleton.

Authors:  Gary E Martin; Bruce D Hilton; Kirill A Blinov
Journal:  Magn Reson Chem       Date:  2011-03-14       Impact factor: 2.447

4.  Utilizing unsymmetrical indirect covariance processing to define 15N- 13C connectivity networks.

Authors:  Gary E Martin; Patrick A Irish; Bruce D Hilton; Kirill A Blinov; Antony J Williams
Journal:  Magn Reson Chem       Date:  2007-08       Impact factor: 2.447

5.  Phosphorus-31 transverse relaxation rate measurements by NMR spectroscopy: insight into conformational exchange along the nucleic acid backbone.

Authors:  Laurent J Catoire
Journal:  J Biomol NMR       Date:  2004-02       Impact factor: 2.835

6.  1H, 13C and 31P n.m.r. spectra and molecular conformation of myo-inositol 1,4,5-triphosphate.

Authors:  J C Lindon; D J Baker; R D Farrant; J M Williams
Journal:  Biochem J       Date:  1986-01-01       Impact factor: 3.857

7.  Profiles of structural heterogeneity in native lipooligosaccharides of Neisseria and cytokine induction.

Authors:  Constance M John; Mingfeng Liu; Gary A Jarvis
Journal:  J Lipid Res       Date:  2008-10-02       Impact factor: 5.922

8.  Base hydrolysis of phosphodiester bonds in pneumococcal polysaccharides.

Authors:  Narahari S Pujar; Ngan Fong Huang; Christopher L Daniels; Lance Dieter; Marshall G Gayton; Ann L Lee
Journal:  Biopolymers       Date:  2004-09       Impact factor: 2.505

9.  Identification of the tetrasaccharide repeating-unit of the Streptococcus pneumoniae type 23 polysaccharide by high-field proton n.m.r. spectroscopy.

Authors:  C Jones
Journal:  Carbohydr Res       Date:  1985-06-15       Impact factor: 2.104

10.  Quantitative covariance NMR by regularization.

Authors:  Yanbin Chen; Fengli Zhang; David Snyder; Zhehong Gan; Lei Bruschweiler-Li; Rafael Brüschweiler
Journal:  J Biomol NMR       Date:  2007-03-10       Impact factor: 2.582

View more
  3 in total

1.  Streptococcus pneumoniae serotype 11D has a bispecific glycosyltransferase and expresses two different capsular polysaccharide repeating units.

Authors:  Melissa B Oliver; Chris Jones; Thomas R Larson; Juan J Calix; Edward R Zartler; Janet Yother; Moon H Nahm
Journal:  J Biol Chem       Date:  2013-06-04       Impact factor: 5.157

2.  Structural Elucidation of the O-Antigen Polysaccharide from Escherichia coli O181.

Authors:  Carolina Fontana; Andrej Weintraub; Göran Widmalm
Journal:  ChemistryOpen       Date:  2014-12-01       Impact factor: 2.911

3.  Structural Studies of Lipopolysaccharide-defective Mutants from Brucella melitensis Identify a Core Oligosaccharide Critical in Virulence.

Authors:  Carolina Fontana; Raquel Conde-Álvarez; Jonas Ståhle; Otto Holst; Maite Iriarte; Yun Zhao; Vilma Arce-Gorvel; Seán Hanniffy; Jean-Pierre Gorvel; Ignacio Moriyón; Göran Widmalm
Journal:  J Biol Chem       Date:  2016-02-11       Impact factor: 5.157

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.