Literature DB >> 17351818

Quantitative covariance NMR by regularization.

Yanbin Chen1, Fengli Zhang, David Snyder, Zhehong Gan, Lei Bruschweiler-Li, Rafael Brüschweiler.   

Abstract

The square root of a covariance spectrum, which offers high spectral resolution along both dimensions requiring only few t (1) increments, yields in good approximation the idealized 2D FT spectrum provided that the amount of magnetization exchanged between spins is relatively small. When this condition is violated, 2D FT and covariance peak volumes may differ. A regularization method is presented that produces a modified covariance spectrum with cross-peak volumes that closely match their 2D FT analogues. The method is demonstrated for TOCSY spectra with variable mixing times.

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Year:  2007        PMID: 17351818     DOI: 10.1007/s10858-007-9148-8

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.582


  7 in total

1.  Theory of covariance nuclear magnetic resonance spectroscopy.

Authors:  Rafael Brüschweiler
Journal:  J Chem Phys       Date:  2004-07-01       Impact factor: 3.488

2.  Covariance nuclear magnetic resonance spectroscopy.

Authors:  Rafael Brüschweiler; Fengli Zhang
Journal:  J Chem Phys       Date:  2004-03-15       Impact factor: 3.488

3.  Covariance NMR spectroscopy by singular value decomposition.

Authors:  Nikola Trbovic; Serge Smirnov; Fengli Zhang; Rafael Brüschweiler
Journal:  J Magn Reson       Date:  2004-12       Impact factor: 2.229

4.  Enhanced covariance spectroscopy from minimal datasets.

Authors:  Yanbin Chen; Fengli Zhang; Wolfgang Bermel; Rafael Brüschweiler
Journal:  J Am Chem Soc       Date:  2006-12-13       Impact factor: 15.419

Review 5.  Analytical strategies in metabonomics.

Authors:  Eva Maria Lenz; Ian D Wilson
Journal:  J Proteome Res       Date:  2007-02       Impact factor: 4.466

Review 6.  High-throughput automated platform for nuclear magnetic resonance-based structural proteomics.

Authors:  Dmitriy A Vinarov; John L Markley
Journal:  Expert Rev Proteomics       Date:  2005-01       Impact factor: 3.940

7.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

  7 in total
  9 in total

1.  Covariance NMR in higher dimensions: application to 4D NOESY spectroscopy of proteins.

Authors:  David A Snyder; Fengli Zhang; Rafael Brüschweiler
Journal:  J Biomol NMR       Date:  2007-09-18       Impact factor: 2.835

2.  Z-matrix formalism for quantitative noise assessment of covariance nuclear magnetic resonance spectra.

Authors:  David A Snyder; Arindam Ghosh; Fengli Zhang; Thomas Szyperski; Rafael Brüschweiler
Journal:  J Chem Phys       Date:  2008-09-14       Impact factor: 3.488

3.  Effortless assignment with 4D covariance sequential correlation maps.

Authors:  Bradley J Harden; Subrata H Mishra; Dominique P Frueh
Journal:  J Magn Reson       Date:  2015-09-21       Impact factor: 2.229

4.  The use of 1H-31P GHMBC and covariance NMR to unambiguously determine phosphate ester linkages in complex polysaccharide mixtures.

Authors:  Edward R Zartler; Gary E Martin
Journal:  J Biomol NMR       Date:  2011-09-16       Impact factor: 2.835

5.  A covariance NMR toolbox for MATLAB and OCTAVE.

Authors:  Timothy Short; Leigh Alzapiedi; Rafael Brüschweiler; David Snyder
Journal:  J Magn Reson       Date:  2010-12-05       Impact factor: 2.229

6.  Deconvolution of chemical mixtures with high complexity by NMR consensus trace clustering.

Authors:  Kerem Bingol; Rafael Brüschweiler
Journal:  Anal Chem       Date:  2011-08-30       Impact factor: 6.986

7.  Simultaneous de novo identification of molecules in chemical mixtures by doubly indirect covariance NMR spectroscopy.

Authors:  Fengli Zhang; Lei Bruschweiler-Li; Rafael Brüschweiler
Journal:  J Am Chem Soc       Date:  2010-11-09       Impact factor: 15.419

8.  NMR in metabolomics and natural products research: two sides of the same coin.

Authors:  Steven L Robinette; Rafael Brüschweiler; Frank C Schroeder; Arthur S Edison
Journal:  Acc Chem Res       Date:  2011-09-02       Impact factor: 22.384

9.  Facilitated assignment of large protein NMR signals with covariance sequential spectra using spectral derivatives.

Authors:  Bradley J Harden; Scott R Nichols; Dominique P Frueh
Journal:  J Am Chem Soc       Date:  2014-09-16       Impact factor: 15.419

  9 in total

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