Literature DB >> 21921996

Simulation and Neutron Diffraction Studies of Small Biomolecules in Water.

Philip E Mason1, George W Neilson, David Price, Marie-Louise Saboungi, John W Brady.   

Abstract

Modern biophysics has benefited greatly from the use of X-ray and neutron diffraction from ordered single crystals of proteins and other macromolecules to give highly detailed pictures of these molecules in the solid state. However, the most biologically relevant environments for these molecules are liquid solutions, and their liquid state properties are sensitive to details of the liquid structuring. The best experimental method for studying such structuring is also neutron diffraction, but of course, the inherent disorder of the liquid state means that these experiments cannot hope to achieve the level of informational detail available from single crystal diffraction. Nonetheless, recent advances in neutron beam intensity, beam stability, and detector sensitivity mean that it should be possible, at least in principle, to use such measurements to extract information about structuring in much more complex systems than have previously been studied. We describe a series of neutron diffraction studies of isotopically labeled molecules in aqueous solution which, when combined with results from computer simulations, can be used to extract conformational information of the hydration of the molecules themselves, essentially opening up new avenues of investigation in structural biology.

Entities:  

Year:  2011        PMID: 21921996      PMCID: PMC3171504          DOI: 10.1007/s11483-010-9192-x

Source DB:  PubMed          Journal:  Food Biophys        ISSN: 1557-1858            Impact factor:   3.114


  21 in total

1.  Improved treatment of the protein backbone in empirical force fields.

Authors:  Alexander D MacKerell; Michael Feig; Charles L Brooks
Journal:  J Am Chem Soc       Date:  2004-01-28       Impact factor: 15.419

2.  Neutron diffraction and simulation studies of the exocyclic hydroxymethyl conformation of glucose.

Authors:  Philip E Mason; George W Neilson; John E Enderby; Marie-Louise Saboungi; Gabriel Cuello; John W Brady
Journal:  J Chem Phys       Date:  2006-12-14       Impact factor: 3.488

3.  The spatial structure in liquid water.

Authors:  P G Kusalik; I M Svishchev
Journal:  Science       Date:  1994-08-26       Impact factor: 47.728

4.  The pressure dependence of hydrophobic interactions is consistent with the observed pressure denaturation of proteins.

Authors:  G Hummer; S Garde; A E García; M E Paulaitis; L R Pratt
Journal:  Proc Natl Acad Sci U S A       Date:  1998-02-17       Impact factor: 11.205

5.  Observation of pyridine aggregation in aqueous solution using neutron scattering experiments and MD simulations.

Authors:  Philip E Mason; George W Neilson; Christopher E Dempsey; David L Price; Marie-Louise Saboungi; John W Brady
Journal:  J Phys Chem B       Date:  2010-04-29       Impact factor: 2.991

Review 6.  Role of hydration and water structure in biological and colloidal interactions.

Authors:  J Israelachvili; H Wennerström
Journal:  Nature       Date:  1996-01-18       Impact factor: 49.962

7.  Structure of aqueous glucose solutions as determined by neutron diffraction with isotopic substitution experiments and molecular dynamics calculations.

Authors:  P E Mason; G W Neilson; J E Enderby; M-L Saboungi; J W Brady
Journal:  J Phys Chem B       Date:  2005-07-14       Impact factor: 2.991

8.  Nanosecond time scale folding dynamics of a pentapeptide in water.

Authors:  D J Tobias; J E Mertz; C L Brooks
Journal:  Biochemistry       Date:  1991-06-18       Impact factor: 3.162

9.  Additive empirical force field for hexopyranose monosaccharides.

Authors:  Olgun Guvench; Shannon N Greene; Ganesh Kamath; John W Brady; Richard M Venable; Richard W Pastor; Alexander D Mackerell
Journal:  J Comput Chem       Date:  2008-11-30       Impact factor: 3.376

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.