Literature DB >> 17176147

Neutron diffraction and simulation studies of the exocyclic hydroxymethyl conformation of glucose.

Philip E Mason1, George W Neilson, John E Enderby, Marie-Louise Saboungi, Gabriel Cuello, John W Brady.   

Abstract

The techniques of neutron diffraction with isotopic substitution (NDIS) and molecular dynamics (MD) simulations have been used to examine the rotational conformation of the exocyclic hydroxymethyl group of D-glucopyranose. First order H/D NDIS experiments were performed on the H6 position in 3m aqueous glucose solutions where the average coherent scattering length of the exchangeable hydrogen atoms was zero (i.e., all correlations between exchangeable hydrogen atoms and other atoms cancel and thus are not present in the scattering data). This H6 experimental result suggests that no single conformation for the C4-C5-C6-O6 dihedral reproduces the observed scattering data well, but that a mixture of the gg and gt conformations, which has been suggested by NMR experiments, gives a reasonable agreement between the MD and experimental data.

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Year:  2006        PMID: 17176147     DOI: 10.1063/1.2393237

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  8 in total

1.  Observation of pyridine aggregation in aqueous solution using neutron scattering experiments and MD simulations.

Authors:  Philip E Mason; George W Neilson; Christopher E Dempsey; David L Price; Marie-Louise Saboungi; John W Brady
Journal:  J Phys Chem B       Date:  2010-04-29       Impact factor: 2.991

2.  Simulation and Neutron Diffraction Studies of Small Biomolecules in Water.

Authors:  Philip E Mason; George W Neilson; David Price; Marie-Louise Saboungi; John W Brady
Journal:  Food Biophys       Date:  2011-06       Impact factor: 3.114

3.  The conformation of a ribose derivative in aqueous solution: a neutron-scattering and molecular dynamics study.

Authors:  Philip E Mason; George W Neilson; Marie-Louise Saboungi; John W Brady; C Allen Bush
Journal:  Biopolymers       Date:  2013-10       Impact factor: 2.505

4.  Effects of varying the 6-position oxidation state of hexopyranoses: a systematic comparative computational analysis of 48 monosaccharide stereoisomers.

Authors:  Alison E Vickman; Daniel C Ashley; Mu-Hyun Baik; Nicola L B Pohl
Journal:  J Mol Model       Date:  2017-06-27       Impact factor: 1.810

5.  Pathways and populations: stereoelectronic insights into the exocyclic torsion of 5-(hydroxymethyl)tetrahydropyran.

Authors:  H Lee Woodcock; Bernard R Brooks; Richard W Pastor
Journal:  J Am Chem Soc       Date:  2008-04-29       Impact factor: 15.419

6.  Anomeric and rotameric preferences of glucopyranose in vacuo, water and organic solvents.

Authors:  Sedat Karabulut; Jerzy Leszczynski
Journal:  J Mol Model       Date:  2013-06-12       Impact factor: 1.810

7.  Structural evidence for inter-residue hydrogen bonding observed for cellobiose in aqueous solution.

Authors:  William B O'Dell; David C Baker; Sylvia E McLain
Journal:  PLoS One       Date:  2012-10-02       Impact factor: 3.240

8.  Structural Comparison between Sucrose and Trehalose in Aqueous Solution.

Authors:  Christoffer Olsson; Jan Swenson
Journal:  J Phys Chem B       Date:  2020-04-03       Impact factor: 2.991

  8 in total

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