Literature DB >> 21914868

Complete genome sequence of the nicotine-degrading Pseudomonas putida strain S16.

Hao Yu1, Hongzhi Tang, Lijuan Wang, Yuxiang Yao, Geng Wu, Ping Xu.   

Abstract

Pseudomonas putida S16 is an efficient degrader of nicotine. The complete genome of strain S16 (5,984,790 bp in length) includes genes related to catabolism of aromatic and heterocyclic compounds. The genes of enzymes in the core genome and a genomic island encode the proteins responsible for nicotine catabolism.

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Year:  2011        PMID： 21914868      PMCID： PMC3187465          DOI： 10.1128/JB.05663-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  16 in total

1.  KEGG: kyoto encyclopedia of genes and genomes.

Authors:  M Kanehisa; S Goto
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Pseudomonas putida: a cosmopolitan opportunist par excellence.

Authors:  Kenneth N Timmis
Journal:  Environ Microbiol       Date:  2002-12       Impact factor: 5.491

3.  Mauve: multiple alignment of conserved genomic sequence with rearrangements.

Authors:  Aaron C E Darling; Bob Mau; Frederick R Blattner; Nicole T Perna
Journal:  Genome Res       Date:  2004-07       Impact factor: 9.043

4.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

Authors:  Daniel R Zerbino; Ewan Birney
Journal:  Genome Res       Date:  2008-03-18       Impact factor: 9.043

5.  Biodegradation and detoxification of nicotine in tobacco solid waste by a Pseudomonas sp.

Authors:  S N Wang; P Xu; H Z Tang; J Meng; X L Liu; J Huang; H Chen; Y Du; H D Blankespoor
Journal:  Biotechnol Lett       Date:  2004-10       Impact factor: 2.461

6.  Insights into the genomic basis of niche specificity of Pseudomonas putida KT2440.

Authors:  V A P Martins Dos Santos; S Heim; E R B Moore; M Strätz; K N Timmis
Journal:  Environ Microbiol       Date:  2004-12       Impact factor: 5.491

7.  A novel gene, encoding 6-hydroxy-3-succinoylpyridine hydroxylase, involved in nicotine degradation by Pseudomonas putida strain S16.

Authors:  Hongzhi Tang; Shuning Wang; Lanying Ma; Xiangzhou Meng; Zixin Deng; Dake Zhang; Cuiqing Ma; Ping Xu
Journal:  Appl Environ Microbiol       Date:  2008-01-18       Impact factor: 4.792

8.  Characterization of environmentally friendly nicotine degradation by Pseudomonas putida biotype A strain S16.

Authors:  Shu Ning Wang; Zhen Liu; Hong Zhi Tang; Jing Meng; Ping Xu
Journal:  Microbiology       Date:  2007-05       Impact factor: 2.777

Review 9.  Comparative genomics and functional analysis of niche-specific adaptation in Pseudomonas putida.

Authors:  Xiao Wu; Sébastien Monchy; Safiyh Taghavi; Wei Zhu; Juan Ramos; Daniel van der Lelie
Journal:  FEMS Microbiol Rev       Date:  2011-03       Impact factor: 16.408

Review 10.  The behavior of bacteria designed for biodegradation.

Authors:  J L Ramos; E Díaz; D Dowling; V de Lorenzo; S Molin; F O'Gara; C Ramos; K N Timmis
Journal:  Biotechnology (N Y)       Date:  1994-12
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  31 in total

1.  Genome sequence of Pseudomonas putida strain B6-2, a superdegrader of polycyclic aromatic hydrocarbons and dioxin-like compounds.

Authors:  Hongzhi Tang; Hao Yu; Qinggang Li; Xiaoyu Wang; Zhonghui Gai; Guangbo Yin; Fei Su; Fei Tao; Cuiqing Ma; Ping Xu
Journal:  J Bacteriol       Date:  2011-12       Impact factor: 3.490

2.  Mechanisms of resistance to chloramphenicol in Pseudomonas putida KT2440.

Authors:  Matilde Fernández; Susana Conde; Jesús de la Torre; Carlos Molina-Santiago; Juan-Luis Ramos; Estrella Duque
Journal:  Antimicrob Agents Chemother       Date:  2011-12-05       Impact factor: 5.191

3.  An enzymatic advance in nicotine cessation therapy.

Authors:  Song Xue; Marsida Kallupi; Bin Zhou; Lauren C Smith; Pedro O Miranda; Olivier George; Kim D Janda
Journal:  Chem Commun (Camb)       Date:  2018-02-13       Impact factor: 6.222

4.  The biochemical origins of the surface-enhanced Raman spectra of bacteria: a metabolomics profiling by SERS.

Authors:  W Ranjith Premasiri; Jean C Lee; Alexis Sauer-Budge; Roger Théberge; Catherine E Costello; Lawrence D Ziegler
Journal:  Anal Bioanal Chem       Date:  2016-04-21       Impact factor: 4.142

5.  Unraveling the concentration-dependent metabolic response of Pseudomonas sp. HF-1 to nicotine stress by ¹H NMR-based metabolomics.

Authors:  Yangfang Ye; Xin Wang; Limin Zhang; Zhenmei Lu; Xiaojun Yan
Journal:  Ecotoxicology       Date:  2012-03-22       Impact factor: 2.823

6.  Molecular mechanism of nicotine degradation by a newly isolated strain, Ochrobactrum sp. strain SJY1.

Authors:  Hao Yu; Hongzhi Tang; Xiongyu Zhu; Yangyang Li; Ping Xu
Journal:  Appl Environ Microbiol       Date:  2014-10-24       Impact factor: 4.792

7.  Differential Effects of Homologous Transcriptional Regulators NicR2A, NicR2B1, and NicR2B2 and Endogenous Ectopic Strong Promoters on Nicotine Metabolism in Pseudomonas sp. Strain JY-Q.

Authors:  Chaochao Huang; Lihui Shan; Zeyu Chen; Ziliang He; Jun Li; Yang Yang; Ming Shu; Fanda Pan; Yang Jiao; Fuming Zhang; Robert J Linhardt; Weihong Zhong
Journal:  Appl Environ Microbiol       Date:  2021-01-15       Impact factor: 4.792

8.  Stability of a Pseudomonas putida KT2440 bacteriophage-carried genomic island and its impact on rhizosphere fitness.

Authors:  Jose M Quesada; María Isabel Soriano; Manuel Espinosa-Urgel
Journal:  Appl Environ Microbiol       Date:  2012-07-27       Impact factor: 4.792

9.  Mechanism of the 6-hydroxy-3-succinoyl-pyridine 3-monooxygenase flavoprotein from Pseudomonas putida S16.

Authors:  Hao Yu; Robert P Hausinger; Hong-Zhi Tang; Ping Xu
Journal:  J Biol Chem       Date:  2014-08-29       Impact factor: 5.157

10.  Molybdenum-containing nicotine hydroxylase genes in a nicotine degradation pathway that is a variant of the pyridine and pyrrolidine pathways.

Authors:  Hao Yu; Hongzhi Tang; Yangyang Li; Ping Xu
Journal:  Appl Environ Microbiol       Date:  2015-09-25       Impact factor: 4.792
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