Literature DB >> 22072645

Genome sequence of Pseudomonas putida strain B6-2, a superdegrader of polycyclic aromatic hydrocarbons and dioxin-like compounds.

Hongzhi Tang1, Hao Yu, Qinggang Li, Xiaoyu Wang, Zhonghui Gai, Guangbo Yin, Fei Su, Fei Tao, Cuiqing Ma, Ping Xu.   

Abstract

Pseudomonas putida strain B6-2 can efficiently degrade environmental pollutants/toxicants, such as polycyclic aromatic hydrocarbons and dioxin-like compounds, and has unique tolerance to organic solvents. Here, we present a 6.24-Mb draft genome sequence of B6-2, which could provide further insights into the biodegradative mechanisms of a diverse range of chemical compounds.

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Year:  2011        PMID: 22072645      PMCID: PMC3232905          DOI: 10.1128/JB.06201-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  13 in total

1.  KEGG: kyoto encyclopedia of genes and genomes.

Authors:  M Kanehisa; S Goto
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Pseudomonas putida: a cosmopolitan opportunist par excellence.

Authors:  Kenneth N Timmis
Journal:  Environ Microbiol       Date:  2002-12       Impact factor: 5.491

Review 3.  Industrial potential of organic solvent tolerant bacteria.

Authors:  Yogita N Sardessai; Saroj Bhosle
Journal:  Biotechnol Prog       Date:  2004 May-Jun

4.  New metabolites in dibenzofuran cometabolic degradation by a biphenyl-cultivated Pseudomonas putida strain B6-2.

Authors:  Qinggang Li; Xiaoyu Wang; Guangbo Yin; Zhonghui Gai; Hongzhi Tang; Cuiqing Ma; Zixin Deng; Ping Xu
Journal:  Environ Sci Technol       Date:  2009-11-15       Impact factor: 9.028

Review 5.  Microbial degradation of sulfur, nitrogen and oxygen heterocycles.

Authors:  Ping Xu; Bo Yu; Fu Li Li; Xiao Feng Cai; Cui Qing Ma
Journal:  Trends Microbiol       Date:  2006-07-24       Impact factor: 17.079

Review 6.  Biodegradation and bioremediation of hydrocarbons in extreme environments.

Authors:  R Margesin; F Schinner
Journal:  Appl Microbiol Biotechnol       Date:  2001-09       Impact factor: 4.813

Review 7.  Microbial biodegradation of polyaromatic hydrocarbons.

Authors:  Ri-He Peng; Ai-Sheng Xiong; Yong Xue; Xiao-Yan Fu; Feng Gao; Wei Zhao; Yong-Sheng Tian; Quan-Hong Yao
Journal:  FEMS Microbiol Rev       Date:  2008-07-24       Impact factor: 16.408

Review 8.  Genetics of polycyclic aromatic hydrocarbon metabolism in diverse aerobic bacteria.

Authors:  Hiroshi Habe; Toshio Omori
Journal:  Biosci Biotechnol Biochem       Date:  2003-02       Impact factor: 2.043

Review 9.  Remediation of soils contaminated with polycyclic aromatic hydrocarbons (PAHs).

Authors:  S Gan; E V Lau; H K Ng
Journal:  J Hazard Mater       Date:  2009-08-04       Impact factor: 10.588

10.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969

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  10 in total

1.  Heterologous expression of polycyclic aromatic hydrocarbon ring-hydroxylating dioxygenase genes from a novel pyrene-degrading betaproteobacterium.

Authors:  David R Singleton; Jing Hu; Michael D Aitken
Journal:  Appl Environ Microbiol       Date:  2012-03-16       Impact factor: 4.792

2.  Structural comparison of p-hydroxybenzoate hydroxylase (PobA) from Pseudomonas putida with PobA from other Pseudomonas spp. and other monooxygenases.

Authors:  John T Lazar; Ludmilla Shuvalova; Monica Rosas-Lemus; Olga Kiryukhina; Karla J F Satchell; George Minasov
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2019-07-02       Impact factor: 1.056

3.  Multiple Roles for Two Efflux Pumps in the Polycyclic Aromatic Hydrocarbon-Degrading Pseudomonas putida Strain B6-2 (DSM 28064).

Authors:  Xuemei Yao; Fei Tao; Kunzhi Zhang; Hongzhi Tang; Ping Xu
Journal:  Appl Environ Microbiol       Date:  2017-12-01       Impact factor: 4.792

4.  Genome sequence of a novel indigo-producing strain, Pseudomonas monteilii QM.

Authors:  Qiao Ma; Yuanyuan Qu; Hongzhi Tang; Hao Yu; Fang Ma; Shengnan Shi; Xuwang Zhang; Hao Zhou; Jiti Zhou; Ping Xu
Journal:  J Bacteriol       Date:  2012-08       Impact factor: 3.490

5.  Stability of a Pseudomonas putida KT2440 bacteriophage-carried genomic island and its impact on rhizosphere fitness.

Authors:  Jose M Quesada; María Isabel Soriano; Manuel Espinosa-Urgel
Journal:  Appl Environ Microbiol       Date:  2012-07-27       Impact factor: 4.792

Review 6.  Antibiotic Resistant Pseudomonas Spp. Spoilers in Fresh Dairy Products: An Underestimated Risk and the Control Strategies.

Authors:  Laura Quintieri; Francesca Fanelli; Leonardo Caputo
Journal:  Foods       Date:  2019-09-01

7.  Genomic characterization of a polyvalent hydrocarbonoclastic bacterium Pseudomonas sp. strain BUN14.

Authors:  Mouna Mahjoubi; Habibu Aliyu; Mohamed Neifar; Simone Cappello; Habib Chouchane; Yasmine Souissi; Ahmed Salaheddine Masmoudi; Don A Cowan; Ameur Cherif
Journal:  Sci Rep       Date:  2021-04-14       Impact factor: 4.379

8.  Bifunctional Immunity Proteins Protect Bacteria against FtsZ-Targeting ADP-Ribosylating Toxins.

Authors:  See-Yeun Ting; Dustin E Bosch; Sarah M Mangiameli; Matthew C Radey; Shuo Huang; Young-Jun Park; Katherine A Kelly; Szymon Krzysztof Filip; Young Ah Goo; Jimmy K Eng; Marc Allaire; David Veesler; Paul A Wiggins; S Brook Peterson; Joseph D Mougous
Journal:  Cell       Date:  2018-10-18       Impact factor: 41.582

9.  Antibiotic resistance determinants in a Pseudomonas putida strain isolated from a hospital.

Authors:  Lázaro Molina; Zulema Udaondo; Estrella Duque; Matilde Fernández; Carlos Molina-Santiago; Amalia Roca; Mario Porcel; Jesús de la Torre; Ana Segura; Patrick Plesiat; Katy Jeannot; Juan-Luis Ramos
Journal:  PLoS One       Date:  2014-01-17       Impact factor: 3.240

10.  A New ICEclc Subfamily Integrative and Conjugative Element Responsible for Horizontal Transfer of Biphenyl and Salicylic Acid Catabolic Pathway in the PCB-Degrading Strain Pseudomonas stutzeri KF716.

Authors:  Jun Hirose; Takahito Watanabe; Taiki Futagami; Hidehiko Fujihara; Nobutada Kimura; Hikaru Suenaga; Masatoshi Goto; Akiko Suyama; Kensuke Furukawa
Journal:  Microorganisms       Date:  2021-11-29
  10 in total

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