Literature DB >> 21914867

Genome sequence of an ammonia-oxidizing soil archaeon, "Candidatus Nitrosoarchaeum koreensis" MY1.

Byung Kwon Kim1, Man-Young Jung, Dong Su Yu, Soo-Je Park, Tae Kwang Oh, Sung-Keun Rhee, Jihyun F Kim.   

Abstract

Ammonia-oxidizing archaea are ubiquitous microorganisms which play important roles in global nitrogen and carbon cycle on earth. Here we present the high-quality draft genome sequence of an ammonia-oxidizing archaeon, "Candidatus Nitrosopumilus koreensis" MY1, that dominated an enrichment culture of a soil sample from the rhizosphere. Its genome contains genes for survival in the rhizosphere environment as well as those for carbon fixation and ammonium oxidation to nitrite.

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Year:  2011        PMID： 21914867      PMCID： PMC3187385          DOI： 10.1128/JB.05717-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  25 in total

1.  Cultivation of autotrophic ammonia-oxidizing archaea from marine sediments in coculture with sulfur-oxidizing bacteria.

Authors:  Byoung-Joon Park; Soo-Je Park; Dae-No Yoon; Stefan Schouten; Jaap S Sinninghe Damsté; Sung-Keun Rhee
Journal:  Appl Environ Microbiol       Date:  2010-09-24       Impact factor: 4.792

2.  Genomic analysis of the uncultivated marine crenarchaeote Cenarchaeum symbiosum.

Authors:  Steven J Hallam; Konstantinos T Konstantinidis; Nik Putnam; Christa Schleper; Yoh-ichi Watanabe; Junichi Sugahara; Christina Preston; José de la Torre; Paul M Richardson; Edward F DeLong
Journal:  Proc Natl Acad Sci U S A       Date:  2006-11-17       Impact factor: 11.205

3.  Archaea dominate the ammonia-oxidizing community in the rhizosphere of the freshwater macrophyte Littorella uniflora.

Authors:  Martina Herrmann; Aaron M Saunders; Andreas Schramm
Journal:  Appl Environ Microbiol       Date:  2008-03-14       Impact factor: 4.792

4.  Recent progress of microbial genome projects in Korea.

Authors:  Haeyoung Jeong; Sung Ho Yoon; Dong-Su Yu; Tae-Kwang Oh; Jihyun F Kim
Journal:  Biotechnol J       Date:  2008-05       Impact factor: 4.677

5.  Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea.

Authors:  C B Walker; J R de la Torre; M G Klotz; H Urakawa; N Pinel; D J Arp; C Brochier-Armanet; P S G Chain; P P Chan; A Gollabgir; J Hemp; M Hügler; E A Karr; M Könneke; M Shin; T J Lawton; T Lowe; W Martens-Habbena; L A Sayavedra-Soto; D Lang; S M Sievert; A C Rosenzweig; G Manning; D A Stahl
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-26       Impact factor: 11.205

6.  Metabolomic characterization of the salt stress response in Streptomyces coelicolor.

Authors:  Stefan Kol; M Elena Merlo; Richard A Scheltema; Marcel de Vries; Roel J Vonk; Niels A Kikkert; Lubbert Dijkhuizen; Rainer Breitling; Eriko Takano
Journal:  Appl Environ Microbiol       Date:  2010-02-26       Impact factor: 4.792

Review 7.  Mesophilic Crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota.

Authors:  Céline Brochier-Armanet; Bastien Boussau; Simonetta Gribaldo; Patrick Forterre
Journal:  Nat Rev Microbiol       Date:  2008-03       Impact factor: 60.633

8.  A 3-hydroxypropionate/4-hydroxybutyrate autotrophic carbon dioxide assimilation pathway in Archaea.

Authors:  Ivan A Berg; Daniel Kockelkorn; Wolfgang Buckel; Georg Fuchs
Journal:  Science       Date:  2007-12-14       Impact factor: 47.728

9.  Ammonia-oxidizing archaea: important players in paddy rhizosphere soil?

Authors:  Xue-Ping Chen; Yong-Guan Zhu; Yue Xia; Ju-Pei Shen; Ji-Zheng He
Journal:  Environ Microbiol       Date:  2008-04-21       Impact factor: 5.491

10.  Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria.

Authors:  Willm Martens-Habbena; Paul M Berube; Hidetoshi Urakawa; José R de la Torre; David A Stahl
Journal:  Nature       Date:  2009-09-30       Impact factor: 49.962
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  40 in total

1.  Comparative analysis of 16S rRNA and amoA genes from archaea selected with organic and inorganic amendments in enrichment culture.

Authors:  Mouzhong Xu; Jon Schnorr; Brandon Keibler; Holly M Simon
Journal:  Appl Environ Microbiol       Date:  2012-01-20       Impact factor: 4.792

2.  Genome sequence of "Candidatus Nitrosopumilus salaria" BD31, an ammonia-oxidizing archaeon from the San Francisco Bay estuary.

Authors:  Annika C Mosier; Eric E Allen; Maria Kim; Steven Ferriera; Christopher A Francis
Journal:  J Bacteriol       Date:  2012-04       Impact factor: 3.490

3.  Genome sequence of "Candidatus Nitrosoarchaeum limnia" BG20, a low-salinity ammonia-oxidizing archaeon from the San Francisco Bay estuary.

Authors:  Annika C Mosier; Eric E Allen; Maria Kim; Steven Ferriera; Christopher A Francis
Journal:  J Bacteriol       Date:  2012-04       Impact factor: 3.490

4.  Enrichment and characterization of an autotrophic ammonia-oxidizing archaeon of mesophilic crenarchaeal group I.1a from an agricultural soil.

Authors:  Man-Young Jung; Soo-Je Park; Deullae Min; Jin-Seog Kim; W Irene C Rijpstra; Jaap S Sinninghe Damsté; Geun-Joong Kim; Eugene L Madsen; Sung-Keun Rhee
Journal:  Appl Environ Microbiol       Date:  2011-10-14       Impact factor: 4.792

5.  "Candidatus Nitrosotenuis aquarius," an Ammonia-Oxidizing Archaeon from a Freshwater Aquarium Biofilter.

Authors:  Laura A Sauder; Katja Engel; Chien-Chi Lo; Patrick Chain; Josh D Neufeld
Journal:  Appl Environ Microbiol       Date:  2018-09-17       Impact factor: 4.792

Review 6.  Diversity, physiology, and niche differentiation of ammonia-oxidizing archaea.

Authors:  Roland Hatzenpichler
Journal:  Appl Environ Microbiol       Date:  2012-08-24       Impact factor: 4.792

Review 7.  The history of aerobic ammonia oxidizers: from the first discoveries to today.

Authors:  Maria Monteiro; Joana Séneca; Catarina Magalhães
Journal:  J Microbiol       Date:  2014-06-28       Impact factor: 3.422

8.  Genome sequence of the leaf-colonizing Bacterium Bacillus sp. strain 5B6, isolated from a cherry tree.

Authors:  Byung Kwon Kim; Joon-hui Chung; Seon-Young Kim; Haeyoung Jeong; Sung Gyun Kang; Soon-Kyeong Kwon; Choong Hoon Lee; Ju Yeon Song; Dong Su Yu; Choong-Min Ryu; Jihyun F Kim
Journal:  J Bacteriol       Date:  2012-07       Impact factor: 3.490

9.  Hydroxylamine as an intermediate in ammonia oxidation by globally abundant marine archaea.

Authors:  Neeraja Vajrala; Willm Martens-Habbena; Luis A Sayavedra-Soto; Andrew Schauer; Peter J Bottomley; David A Stahl; Daniel J Arp
Journal:  Proc Natl Acad Sci U S A       Date:  2012-12-31       Impact factor: 11.205

10.  Comparative genomics reveals adaptations of a halotolerant thaumarchaeon in the interfaces of brine pools in the Red Sea.

Authors:  David Kamanda Ngugi; Jochen Blom; Intikhab Alam; Mamoon Rashid; Wail Ba-Alawi; Guishan Zhang; Tyas Hikmawan; Yue Guan; Andre Antunes; Rania Siam; Hamza El Dorry; Vladimir Bajic; Ulrich Stingl
Journal:  ISME J       Date:  2014-08-08       Impact factor: 10.302
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