Literature DB >> 22461555

Genome sequence of "Candidatus Nitrosopumilus salaria" BD31, an ammonia-oxidizing archaeon from the San Francisco Bay estuary.

Annika C Mosier1, Eric E Allen, Maria Kim, Steven Ferriera, Christopher A Francis.   

Abstract

Ammonia-oxidizing archaea (AOA) play important roles in nitrogen and carbon cycling in marine and terrestrial ecosystems. Here, we present the draft genome sequence for the ammonia-oxidizing archaeon "Candidatus Nitrosopumilus salaria" BD31, which was enriched in culture from sediments of the San Francisco Bay estuary. The genome sequences revealed many similarities to the genome of Nitrosopumilus maritimus.

Entities:  

Mesh：

Substances：

Year:  2012        PMID： 22461555      PMCID： PMC3318490          DOI： 10.1128/JB.00013-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  15 in total

Review 1.  Autotrophic carbon fixation in archaea.

Authors:  Ivan A Berg; Daniel Kockelkorn; W Hugo Ramos-Vera; Rafael F Say; Jan Zarzycki; Michael Hügler; Birgit E Alber; Georg Fuchs
Journal:  Nat Rev Microbiol       Date:  2010-05-10       Impact factor: 60.633

2.  Distinct gene set in two different lineages of ammonia-oxidizing archaea supports the phylum Thaumarchaeota.

Authors:  Anja Spang; Roland Hatzenpichler; Céline Brochier-Armanet; Thomas Rattei; Patrick Tischler; Eva Spieck; Wolfgang Streit; David A Stahl; Michael Wagner; Christa Schleper
Journal:  Trends Microbiol       Date:  2010-07-02       Impact factor: 17.079

3.  Isolation of an autotrophic ammonia-oxidizing marine archaeon.

Authors:  Martin Könneke; Anne E Bernhard; José R de la Torre; Christopher B Walker; John B Waterbury; David A Stahl
Journal:  Nature       Date:  2005-09-22       Impact factor: 49.962

4.  Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea.

Authors:  C B Walker; J R de la Torre; M G Klotz; H Urakawa; N Pinel; D J Arp; C Brochier-Armanet; P S G Chain; P P Chan; A Gollabgir; J Hemp; M Hügler; E A Karr; M Könneke; M Shin; T J Lawton; T Lowe; W Martens-Habbena; L A Sayavedra-Soto; D Lang; S M Sievert; A C Rosenzweig; G Manning; D A Stahl
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-26       Impact factor: 11.205

5.  A unique cell division machinery in the Archaea.

Authors:  Ann-Christin Lindås; Erik A Karlsson; Maria T Lindgren; Thijs J G Ettema; Rolf Bernander
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-05       Impact factor: 11.205

6.  Search for a 'Tree of Life' in the thicket of the phylogenetic forest.

Authors:  Pere Puigbò; Yuri I Wolf; Eugene V Koonin
Journal:  J Biol       Date:  2009-07-13

7.  A 3-hydroxypropionate/4-hydroxybutyrate autotrophic carbon dioxide assimilation pathway in Archaea.

Authors:  Ivan A Berg; Daniel Kockelkorn; Wolfgang Buckel; Georg Fuchs
Journal:  Science       Date:  2007-12-14       Impact factor: 47.728

8.  Relative abundance and diversity of ammonia-oxidizing archaea and bacteria in the San Francisco Bay estuary.

Authors:  Annika C Mosier; Christopher A Francis
Journal:  Environ Microbiol       Date:  2008-11       Impact factor: 5.491

9.  Pathways of carbon assimilation and ammonia oxidation suggested by environmental genomic analyses of marine Crenarchaeota.

Authors:  Steven J Hallam; Tracy J Mincer; Christa Schleper; Christina M Preston; Katie Roberts; Paul M Richardson; Edward F DeLong
Journal:  PLoS Biol       Date:  2006-03-21       Impact factor: 8.029

10.  CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats.

Authors:  Ibtissem Grissa; Gilles Vergnaud; Christine Pourcel
Journal:  Nucleic Acids Res       Date:  2007-05-30       Impact factor: 16.971
View more
  27 in total

1.  Genome Reconstruction from Metagenomic Data Sets Reveals Novel Microbes in the Brackish Waters of the Caspian Sea.

Authors:  Maliheh Mehrshad; Mohammad Ali Amoozegar; Rohit Ghai; Seyed Abolhassan Shahzadeh Fazeli; Francisco Rodriguez-Valera
Journal:  Appl Environ Microbiol       Date:  2016-01-04       Impact factor: 4.792

2.  Single-cell genomics shedding light on marine Thaumarchaeota diversification.

Authors:  Haiwei Luo; Bradley B Tolar; Brandon K Swan; Chuanlun L Zhang; Ramunas Stepanauskas; Mary Ann Moran; James T Hollibaugh
Journal:  ISME J       Date:  2013-11-07       Impact factor: 10.302

3.  "Candidatus Nitrosotenuis aquarius," an Ammonia-Oxidizing Archaeon from a Freshwater Aquarium Biofilter.

Authors:  Laura A Sauder; Katja Engel; Chien-Chi Lo; Patrick Chain; Josh D Neufeld
Journal:  Appl Environ Microbiol       Date:  2018-09-17       Impact factor: 4.792

4.  Biogeography of Planktonic and Benthic Archaeal Communities in a Subtropical Eutrophic Estuary of China.

Authors:  Anyi Hu; Liyuan Hou; Chang-Ping Yu
Journal:  Microb Ecol       Date:  2015-03-25       Impact factor: 4.552

Review 5.  Diversity, physiology, and niche differentiation of ammonia-oxidizing archaea.

Authors:  Roland Hatzenpichler
Journal:  Appl Environ Microbiol       Date:  2012-08-24       Impact factor: 4.792

6.  Genomic Characteristics of a Novel Species of Ammonia-Oxidizing Archaea from the Jiulong River Estuary.

Authors:  Dayu Zou; Ru Wan; Lili Han; Min Nina Xu; Yang Liu; Hongbin Liu; Shuh-Ji Kao; Meng Li
Journal:  Appl Environ Microbiol       Date:  2020-09-01       Impact factor: 4.792

7.  Vertical distribution of archaeal communities associated with anaerobic degradation of pentabromodiphenyl ether (BDE-99) in river-based groundwater recharge with reclaimed water.

Authors:  Yulin Yan; Mengsi Ma; Xiang Liu; Weifang Ma; Yangyao Li
Journal:  Environ Sci Pollut Res Int       Date:  2017-09-04       Impact factor: 4.223

8.  Hydroxylamine as an intermediate in ammonia oxidation by globally abundant marine archaea.

Authors:  Neeraja Vajrala; Willm Martens-Habbena; Luis A Sayavedra-Soto; Andrew Schauer; Peter J Bottomley; David A Stahl; Daniel J Arp
Journal:  Proc Natl Acad Sci U S A       Date:  2012-12-31       Impact factor: 11.205

9.  Thaumarchaeotal signature gene distribution in sediments of the northern South China Sea: an indicator of the metabolic intersection of the marine carbon, nitrogen, and phosphorus cycles?

Authors:  Hongyue Dang; Haixia Zhou; Jinying Yang; Huangmin Ge; Nianzhi Jiao; Xiwu Luan; Chuanlun Zhang; Martin G Klotz
Journal:  Appl Environ Microbiol       Date:  2013-01-18       Impact factor: 4.792

10.  Comparative genomics reveals adaptations of a halotolerant thaumarchaeon in the interfaces of brine pools in the Red Sea.

Authors:  David Kamanda Ngugi; Jochen Blom; Intikhab Alam; Mamoon Rashid; Wail Ba-Alawi; Guishan Zhang; Tyas Hikmawan; Yue Guan; Andre Antunes; Rania Siam; Hamza El Dorry; Vladimir Bajic; Ulrich Stingl
Journal:  ISME J       Date:  2014-08-08       Impact factor: 10.302
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.