Literature DB >> 21914846

Design and application of a class of sensors to monitor Ca2+ dynamics in high Ca2+ concentration cellular compartments.

Shen Tang1, Hing-Cheung Wong, Zhong-Min Wang, Yun Huang, Jin Zou, You Zhuo, Andrea Pennati, Giovanni Gadda, Osvaldo Delbono, Jenny J Yang.   

Abstract

Quantitative analysis of Ca(2+) fluctuations in the endoplasmic/sarcoplasmic reticulum (ER/SR) is essential to defining the mechanisms of Ca(2+)-dependent signaling under physiological and pathological conditions. Here, we developed a unique class of genetically encoded indicators by designing a Ca(2+) binding site in the EGFP. One of them, calcium sensor for detecting high concentration in the ER, exhibits unprecedented Ca(2+) release kinetics with an off-rate estimated at around 700 s(-1) and appropriate Ca(2+) binding affinity, likely attributable to local Ca(2+)-induced conformational changes around the designed Ca(2+) binding site and reduced chemical exchange between two chromophore states. Calcium sensor for detecting high concentration in the ER reported considerable differences in ER Ca(2+) dynamics and concentration among human epithelial carcinoma cells (HeLa), human embryonic kidney 293 cells (HEK-293), and mouse myoblast cells (C2C12), enabling us to monitor SR luminal Ca(2+) in flexor digitorum brevis muscle fibers to determine the mechanism of diminished SR Ca(2+) release in aging mice. This sensor will be invaluable in examining pathogenesis characterized by alterations in Ca(2+) homeostasis.

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Year:  2011        PMID: 21914846      PMCID: PMC3182728          DOI: 10.1073/pnas.1103015108

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  34 in total

Review 1.  Inositol trisphosphate and calcium oscillations.

Authors:  Michael J Berridge
Journal:  Biochem Soc Symp       Date:  2007

2.  Ca2+ indicators based on computationally redesigned calmodulin-peptide pairs.

Authors:  Amy E Palmer; Marta Giacomello; Tanja Kortemme; S Andrew Hires; Varda Lev-Ram; David Baker; Roger Y Tsien
Journal:  Chem Biol       Date:  2006-05

Review 3.  Calcium signaling.

Authors:  David E Clapham
Journal:  Cell       Date:  2007-12-14       Impact factor: 41.582

4.  Ca2+ shuttling between endoplasmic reticulum and mitochondria underlying Ca2+ oscillations.

Authors:  Kiyoaki Ishii; Kenzo Hirose; Masamitsu Iino
Journal:  EMBO Rep       Date:  2006-01-13       Impact factor: 8.807

5.  Developing sensors for real-time measurement of high Ca2+ concentrations.

Authors:  Jin Zou; Aldebaran M Hofer; Monica M Lurtz; Giovanni Gadda; April L Ellis; Ning Chen; Yun Huang; Angela Holder; Yiming Ye; Charles F Louis; Kristy Welshhans; Vincent Rehder; Jenny J Yang
Journal:  Biochemistry       Date:  2007-10-09       Impact factor: 3.162

6.  Confocal imaging of [Ca2+] in cellular organelles by SEER, shifted excitation and emission ratioing of fluorescence.

Authors:  Bradley S Launikonis; Jingsong Zhou; Leandro Royer; Thomas R Shannon; Gustavo Brum; Eduardo Ríos
Journal:  J Physiol       Date:  2005-06-09       Impact factor: 5.182

7.  Structural basis for calcium sensing by GCaMP2.

Authors:  Qi Wang; Bo Shui; Michael I Kotlikoff; Holger Sondermann
Journal:  Structure       Date:  2008-12-10       Impact factor: 5.006

8.  A genetically encoded calcium indicator for chronic in vivo two-photon imaging.

Authors:  Marco Mank; Alexandre Ferrão Santos; Stephan Direnberger; Thomas D Mrsic-Flogel; Sonja B Hofer; Valentin Stein; Thomas Hendel; Dierk F Reiff; Christiaan Levelt; Alexander Borst; Tobias Bonhoeffer; Mark Hübener; Oliver Griesbeck
Journal:  Nat Methods       Date:  2008-09       Impact factor: 28.547

9.  Calcium Green FlAsH as a genetically targeted small-molecule calcium indicator.

Authors:  Oded Tour; Stephen R Adams; Rex A Kerr; Rene M Meijer; Terrence J Sejnowski; Richard W Tsien; Roger Y Tsien
Journal:  Nat Chem Biol       Date:  2007-06-17       Impact factor: 15.040

10.  Imaging neural activity in worms, flies and mice with improved GCaMP calcium indicators.

Authors:  Lin Tian; S Andrew Hires; Tianyi Mao; Daniel Huber; M Eugenia Chiappe; Sreekanth H Chalasani; Leopoldo Petreanu; Jasper Akerboom; Sean A McKinney; Eric R Schreiter; Cornelia I Bargmann; Vivek Jayaraman; Karel Svoboda; Loren L Looger
Journal:  Nat Methods       Date:  2009-11-08       Impact factor: 28.547

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  47 in total

1.  Red fluorescent proteins (RFPs) and RFP-based biosensors for neuronal imaging applications.

Authors:  Yi Shen; Tiffany Lai; Robert E Campbell
Journal:  Neurophotonics       Date:  2015-06-19       Impact factor: 3.593

2.  Cheng et al. reply.

Authors:  Heping Cheng; Wang Wang; Xianhua Wang; Shey-Shing Sheu; Robert T Dirksen; Meng-Qiu Dong
Journal:  Nature       Date:  2014-10-23       Impact factor: 49.962

Review 3.  The excitation-contraction coupling mechanism in skeletal muscle.

Authors:  Juan C Calderón; Pura Bolaños; Carlo Caputo
Journal:  Biophys Rev       Date:  2014-01-24

Review 4.  A study of the mechanisms of excitation-contraction coupling in frog skeletal muscle based on measurements of [Ca2+] transients inside the sarcoplasmic reticulum.

Authors:  J Fernando Olivera; Gonzalo Pizarro
Journal:  J Muscle Res Cell Motil       Date:  2018-08-24       Impact factor: 2.698

5.  Dynamic measurement of the calcium buffering properties of the sarcoplasmic reticulum in mouse skeletal muscle.

Authors:  Carlo Manno; Monika Sztretye; Lourdes Figueroa; Paul D Allen; Eduardo Ríos
Journal:  J Physiol       Date:  2012-11-12       Impact factor: 5.182

6.  Predicting Ca2+ -binding sites using refined carbon clusters.

Authors:  Kun Zhao; Xue Wang; Hing C Wong; Robert Wohlhueter; Michael P Kirberger; Guantao Chen; Jenny J Yang
Journal:  Proteins       Date:  2012-07-31

7.  GAP, an aequorin-based fluorescent indicator for imaging Ca2+ in organelles.

Authors:  Arancha Rodriguez-Garcia; Jonathan Rojo-Ruiz; Paloma Navas-Navarro; Francisco Javier Aulestia; Sonia Gallego-Sandin; Javier Garcia-Sancho; Maria Teresa Alonso
Journal:  Proc Natl Acad Sci U S A       Date:  2014-02-05       Impact factor: 11.205

8.  Monitoring Endoplasmic Reticulum Calcium Homeostasis Using a Gaussia Luciferase SERCaMP.

Authors:  Mark J Henderson; Emily S Wires; Kathleen A Trychta; Xiaokang Yan; Brandon K Harvey
Journal:  J Vis Exp       Date:  2015-09-06       Impact factor: 1.355

9.  Lysosomes shape Ins(1,4,5)P3-evoked Ca2+ signals by selectively sequestering Ca2+ released from the endoplasmic reticulum.

Authors:  Cristina I López-Sanjurjo; Stephen C Tovey; David L Prole; Colin W Taylor
Journal:  J Cell Sci       Date:  2012-10-24       Impact factor: 5.285

Review 10.  Fast kinetics of calcium signaling and sensor design.

Authors:  Shen Tang; Florence Reddish; You Zhuo; Jenny J Yang
Journal:  Curr Opin Chem Biol       Date:  2015-07-04       Impact factor: 8.822

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