Literature DB >> 21909115

Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.

Georg B Ehret, Patricia B Munroe, Kenneth M Rice, Murielle Bochud, Andrew D Johnson, Daniel I Chasman, Albert V Smith, Martin D Tobin, Germaine C Verwoert, Shih-Jen Hwang, Vasyl Pihur, Peter Vollenweider, Paul F O'Reilly, Najaf Amin, Jennifer L Bragg-Gresham, Alexander Teumer, Nicole L Glazer, Lenore Launer, Jing Hua Zhao, Yurii Aulchenko, Simon Heath, Siim Sõber, Afshin Parsa, Jian'an Luan, Pankaj Arora, Abbas Dehghan, Feng Zhang, Gavin Lucas, Andrew A Hicks, Anne U Jackson, John F Peden, Toshiko Tanaka, Sarah H Wild, Igor Rudan, Wilmar Igl, Yuri Milaneschi, Alex N Parker, Cristiano Fava, John C Chambers, Ervin R Fox, Meena Kumari, Min Jin Go, Pim van der Harst, Wen Hong Linda Kao, Marketa Sjögren, D G Vinay, Myriam Alexander, Yasuharu Tabara, Sue Shaw-Hawkins, Peter H Whincup, Yongmei Liu, Gang Shi, Johanna Kuusisto, Bamidele Tayo, Mark Seielstad, Xueling Sim, Khanh-Dung Hoang Nguyen, Terho Lehtimäki, Giuseppe Matullo, Ying Wu, Tom R Gaunt, N Charlotte Onland-Moret, Matthew N Cooper, Carl G P Platou, Elin Org, Rebecca Hardy, Santosh Dahgam, Jutta Palmen, Veronique Vitart, Peter S Braund, Tatiana Kuznetsova, Cuno S P M Uiterwaal, Adebowale Adeyemo, Walter Palmas, Harry Campbell, Barbara Ludwig, Maciej Tomaszewski, Ioanna Tzoulaki, Nicholette D Palmer, Thor Aspelund, Melissa Garcia, Yen-Pei C Chang, Jeffrey R O'Connell, Nanette I Steinle, Diederick E Grobbee, Dan E Arking, Sharon L Kardia, Alanna C Morrison, Dena Hernandez, Samer Najjar, Wendy L McArdle, David Hadley, Morris J Brown, John M Connell, Aroon D Hingorani, Ian N M Day, Debbie A Lawlor, John P Beilby, Robert W Lawrence, Robert Clarke, Jemma C Hopewell, Halit Ongen, Albert W Dreisbach, Yali Li, J Hunter Young, Joshua C Bis, Mika Kähönen, Jorma Viikari, Linda S Adair, Nanette R Lee, Ming-Huei Chen, Matthias Olden, Cristian Pattaro, Judith A Hoffman Bolton, Anna Köttgen, Sven Bergmann, Vincent Mooser, Nish Chaturvedi, Timothy M Frayling, Muhammad Islam, Tazeen H Jafar, Jeanette Erdmann, Smita R Kulkarni, Stefan R Bornstein, Jürgen Grässler, Leif Groop, Benjamin F Voight, Johannes Kettunen, Philip Howard, Andrew Taylor, Simonetta Guarrera, Fulvio Ricceri, Valur Emilsson, Andrew Plump, Inês Barroso, Kay-Tee Khaw, Alan B Weder, Steven C Hunt, Yan V Sun, Richard N Bergman, Francis S Collins, Lori L Bonnycastle, Laura J Scott, Heather M Stringham, Leena Peltonen, Markus Perola, Erkki Vartiainen, Stefan-Martin Brand, Jan A Staessen, Thomas J Wang, Paul R Burton, Maria Soler Artigas, Yanbin Dong, Harold Snieder, Xiaoling Wang, Haidong Zhu, Kurt K Lohman, Megan E Rudock, Susan R Heckbert, Nicholas L Smith, Kerri L Wiggins, Ayo Doumatey, Daniel Shriner, Gudrun Veldre, Margus Viigimaa, Sanjay Kinra, Dorairaj Prabhakaran, Vikal Tripathy, Carl D Langefeld, Annika Rosengren, Dag S Thelle, Anna Maria Corsi, Andrew Singleton, Terrence Forrester, Gina Hilton, Colin A McKenzie, Tunde Salako, Naoharu Iwai, Yoshikuni Kita, Toshio Ogihara, Takayoshi Ohkubo, Tomonori Okamura, Hirotsugu Ueshima, Satoshi Umemura, Susana Eyheramendy, Thomas Meitinger, H-Erich Wichmann, Yoon Shin Cho, Hyung-Lae Kim, Jong-Young Lee, James Scott, Joban S Sehmi, Weihua Zhang, Bo Hedblad, Peter Nilsson, George Davey Smith, Andrew Wong, Narisu Narisu, Alena Stančáková, Leslie J Raffel, Jie Yao, Sekar Kathiresan, Christopher J O'Donnell, Stephen M Schwartz, M Arfan Ikram, W T Longstreth, Thomas H Mosley, Sudha Seshadri, Nick R G Shrine, Louise V Wain, Mario A Morken, Amy J Swift, Jaana Laitinen, Inga Prokopenko, Paavo Zitting, Jackie A Cooper, Steve E Humphries, John Danesh, Asif Rasheed, Anuj Goel, Anders Hamsten, Hugh Watkins, Stephan J L Bakker, Wiek H van Gilst, Charles S Janipalli, K Radha Mani, Chittaranjan S Yajnik, Albert Hofman, Francesco U S Mattace-Raso, Ben A Oostra, Ayse Demirkan, Aaron Isaacs, Fernando Rivadeneira, Edward G Lakatta, Marco Orru, Angelo Scuteri, Mika Ala-Korpela, Antti J Kangas, Leo-Pekka Lyytikäinen, Pasi Soininen, Taru Tukiainen, Peter Würtz, Rick Twee-Hee Ong, Marcus Dörr, Heyo K Kroemer, Uwe Völker, Henry Völzke, Pilar Galan, Serge Hercberg, Mark Lathrop, Diana Zelenika, Panos Deloukas, Massimo Mangino, Tim D Spector, Guangju Zhai, James F Meschia, Michael A Nalls, Pankaj Sharma, Janos Terzic, M V Kranthi Kumar, Matthew Denniff, Ewa Zukowska-Szczechowska, Lynne E Wagenknecht, F Gerald R Fowkes, Fadi J Charchar, Peter E H Schwarz, Caroline Hayward, Xiuqing Guo, Charles Rotimi, Michiel L Bots, Eva Brand, Nilesh J Samani, Ozren Polasek, Philippa J Talmud, Fredrik Nyberg, Diana Kuh, Maris Laan, Kristian Hveem, Lyle J Palmer, Yvonne T van der Schouw, Juan P Casas, Karen L Mohlke, Paolo Vineis, Olli Raitakari, Santhi K Ganesh, Tien Y Wong, E Shyong Tai, Richard S Cooper, Markku Laakso, Dabeeru C Rao, Tamara B Harris, Richard W Morris, Anna F Dominiczak, Mika Kivimaki, Michael G Marmot, Tetsuro Miki, Danish Saleheen, Giriraj R Chandak, Josef Coresh, Gerjan Navis, Veikko Salomaa, Bok-Ghee Han, Xiaofeng Zhu, Jaspal S Kooner, Olle Melander, Paul M Ridker, Stefania Bandinelli, Ulf B Gyllensten, Alan F Wright, James F Wilson, Luigi Ferrucci, Martin Farrall, Jaakko Tuomilehto, Peter P Pramstaller, Roberto Elosua, Nicole Soranzo, Eric J G Sijbrands, David Altshuler, Ruth J F Loos, Alan R Shuldiner, Christian Gieger, Pierre Meneton, Andre G Uitterlinden, Nicholas J Wareham, Vilmundur Gudnason, Jerome I Rotter, Rainer Rettig, Manuela Uda, David P Strachan, Jacqueline C M Witteman, Anna-Liisa Hartikainen, Jacques S Beckmann, Eric Boerwinkle, Ramachandran S Vasan, Michael Boehnke, Martin G Larson, Marjo-Riitta Järvelin, Bruce M Psaty, Gonçalo R Abecasis, Aravinda Chakravarti, Paul Elliott, Cornelia M van Duijn, Christopher Newton-Cheh, Daniel Levy, Mark J Caulfield, Toby Johnson.   

Abstract

Blood pressure is a heritable trait influenced by several biological pathways and responsive to environmental stimuli. Over one billion people worldwide have hypertension (≥140 mm Hg systolic blood pressure or  ≥90 mm Hg diastolic blood pressure). Even small increments in blood pressure are associated with an increased risk of cardiovascular events. This genome-wide association study of systolic and diastolic blood pressure, which used a multi-stage design in 200,000 individuals of European descent, identified sixteen novel loci: six of these loci contain genes previously known or suspected to regulate blood pressure (GUCY1A3-GUCY1B3, NPR3-C5orf23, ADM, FURIN-FES, GOSR2, GNAS-EDN3); the other ten provide new clues to blood pressure physiology. A genetic risk score based on 29 genome-wide significant variants was associated with hypertension, left ventricular wall thickness, stroke and coronary artery disease, but not kidney disease or kidney function. We also observed associations with blood pressure in East Asian, South Asian and African ancestry individuals. Our findings provide new insights into the genetics and biology of blood pressure, and suggest potential novel therapeutic pathways for cardiovascular disease prevention.

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Year:  2011        PMID: 21909115      PMCID: PMC3340926          DOI: 10.1038/nature10405

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


Genetic approaches have advanced the understanding of biological pathways underlying inter-individual variation in BP. For example, studies of rare Mendelian BP disorders have identified multiple defects in renal sodium handling pathways[4]. More recently two genome-wide association studies (GWAS), each of >25,000 individuals of European-ancestry, identified 13 loci associated with SBP, DBP, and hypertension[5,6]. We now report results of a new meta-analysis of GWAS data that includes staged follow-up genotyping to identify additional BP loci. Primary analyses evaluated associations between 2.5 million genotyped or imputed single nucleotide polymorphisms (SNPs) and SBP and DBP in 69,395 individuals of European ancestry from 29 studies (Supplementary Materials Sections 1–3, Supplementary Tables 1–2). Following GWAS meta-analysis, we conducted a three-stage validation experiment that made efficient use of available genotyping resources, to follow up top signals in up to 133,661 additional individuals of European descent (Supplementary Fig. 1 and Supplementary Materials Section 4). Twenty-nine independent SNPs at 28 loci were significantly associated with SBP, DBP, or both in the meta-analysis combining discovery and follow up data (Fig. 1, Table 1, Supplementary Figs 2–3, Supplementary Tables 3–5). All 29 SNPs attained association P <5×10−9, an order of magnitude beyond the standard genome-wide significance level for a single stage experiment (Table 1).
Fig. 1

Genome-wide –log10 P-value plots and effects for significant loci.

Genome-wide –log10 P-value plots are shown for systolic (SBP: panel a) and diastolic (DBP: panel b). SNPs within loci reaching genome-wide significance are labeled in red for SBP and blue for DBP (±2.5Mb of lowest P-value) and lowest P-values in the initial genome-wide analysis as well as the results of analysis including validation data are labeled separately. The lowest P-values in the initial GWAS are denoted as an X. The range of different sample sizes in the final meta-analysis including the validation data are indicated as: circle (96–140k), triangle (>140–180k), and diamond (>180–220k). SNPs near unconfirmed loci are in black. The horizontal dotted line is P=2.5 × 10−8. Panel c shows the effect size estimates and 95% confidence bars per BP-increasing allele of the 29 significant variants for SBP (red) and DBP (blue). Effect sizes are expressed in mmHg/allele. GUCY = GUCY1A3-GUCY1B3.

Table 1

Summary association results for 29 BP SNPs

Summary association statistics, based on combined discovery and follow-up data, for 29 independent SNPs in individuals of European ancestry are shown. New genome-wide significant findings (17 SNPs) are presented in the top half of the table, data on 12 previously published signals are presented in the lower half.

LocusIndex SNPChrPositionCA/NCACAFnsSNPeSNPSBP
DBP
HTN
BetaP-valueEffect in EA/SA/ABetaP-valueEffect in EA/SA/ABetaP-value
MOV10rs29325381113,018,066G/A0.75Y(p)Y(p)0.3881.2*10−9+/+/−0.249.9*10−10+/+*/−0.0492.9*10−7

SLC4A7rs13082711327,512,913T/C0.78Y(p)Y(p)−0.3151.5*10−6−/−/+−0.2383.8*10−9−/−/+−0.0353.6*10−4

MECOMrs4190763170,583,580T/C0.47--0.4091.8*10−13+/+/+0.2412.1*10−12+/+/−0.0313.1*10−4

SLC39A8rs131073254103,407,732T/C0.05YY(+)−0.9813.3*10−14?/+/+−0.6842.3*10−17?/+/+−0.1054.9*10−7

GUCY1A3-GUCY1B3rs131395714156,864,963C/A0.76--0.3211.2*10−6+/−/+0.262.2*10−10+/−/+0.0422.5*10−5

NPR3-C5orf23rs1173771532,850,785G/A0.6--0.5041.8*10−16+*/+/+0.2619.1*10−12+*/+/−0.0623.2*10−10

EBF1rs119536305157,777,980T/C0.37--−0.4123.0*10−11+/+/+−0.2813.8*10−13+/+/+−0.0521.7*10−7

HFErs1799945626,199,158G/C0.14Y-0.6277.7*10−12+/+/−0.4571.5*10−15+/+/−0.0951.8*10−10

BAT2-BAT5rs805303631,724,345G/A0.61Y(p)Y(+)0.3761.5*10−11−/−/?0.2283.0*10−11−/−/+0.0541.1*10−10

CACNB2(5)rs43738141018,459,978G/C0.55--−0.3734.8*10−11+/+/−−0.2184.4*10−10−/+/−−0.0468.5*10−8

PLCE1rs9327641095,885,930G/A0.44--0.4847.1*10−16+/+/−0.1858.1*10−7+/+/−0.0559.4*10−9

ADMrs71292201110,307,114G/A0.89--−0.6193.0*10−12?/−/+−0.2996.4*10−8?/−/+−0.0441.1*10−3

FLJ32810-TMEM133rs63318511100,098,748G/C0.28--−0.5651.2*10−17+*/+/+−0.3282.0*10−15+*/+/−−0.075.4*10−11

FURIN-FESrs25215011589,238,392T/A0.31-Y(−)0.655.2*10−19+*/+/+0.3591.9*10−15+*/+/+0.0597.0*10−7

GOSR2rs176087661742,368,270T/C0.86-Y(+)−0.5561.1*10−10+/−/+−0.1290.017+/−/+−0.0250.08

JAG1rs13272352010,917,030G/A0.46--0.341.9*10−8+*/+/+0.3021.4*10−15+*/+*/+0.0344.6*10−4

GNAS-EDN3rs60154502057,184,512G/A0.12Y(p)-0.8963.9*10−23?/+/+0.5575.6*10−23?/+*/+0.114.2*10−14

MTHFR-NPPBrs17367504111,785,365G/A0.15-Y(−/r)−0.9038.7*10−22+/+/+−0.5473.5*10−19+/+/+−0.1032.3*10−10

ULK4rs3774372341,852,418T/C0.83YY(r/p)−0.0670.39−/−/+−0.3679.0*10−14+/+/+−0.0170.18

FGF5rs1458038481,383,747T/C0.29--0.7061.5*10−23+*/+/+0.4578.5*10−25+*/+*/+0.0721.9*10−7

CACNB2(3)rs18133531018,747,454T/C0.68--0.5692.6*10−12+/+/+0.4152.3*10−15+/+/+0.0786.2*10−10

C10orf107rs45908171063,137,559G/C0.84-Y(r)0.6464.0*10−12−/+/−0.4191.3*10−12−/−/−0.0969.8*10−9

CYP17A1-NT5C2rs1119154810104,836,168T/C0.91-Y(−)1.0956.9*10−26+*/+*/+0.4649.4*10−13+*/+*/+0.0971.4*10−5

PLEKHA7rs3818151116,858,844T/C0.26--0.5755.3*10−11+*/+/+0.3485.3*10−10+*/−/+0.0623.4*10−6

ATP2B1rs172497541288,584,717G/A0.84--0.9281.8*10−18+*/+*/−0.5221.2*10−14+*/+*/−0.1261.1*10−14

SH2B3rs318450412110,368,991T/C0.47YY(+)0.5983.8*10−18−/−/+0.4483.6*10−25−/−/+0.0562.6*10−6

TBX5-TBX3rs1085041112113,872,179T/C0.7--0.3545.4*10−8−/+/−0.2535.4*10−10−/−/−0.0455.2*10−6

CYP1A1-ULK3rs13789421572,864,420C/A0.35-Y(+)0.6135.7*10−23+*/+/+0.4162.7*10−26+*/+/−0.0731.0*10−8

ZNF652rs129408871744,757,806T/C0.38-Y(−)0.3621.8*10−10+/−/+0.272.3*10−14+/−/+0.0461.2*10−7

Y indicates the BP index SNP is a nsSNP, Y(p) indicates a proxy SNP is a nsSNP. Y(+): indicatesBP index SNP is the strongest known eSNP for a transcript; Y(−): indicates BP index SNP is an eSNP but not strongest known eSNP for any transcript. Y(r): indicates BP index SNP is strongest known eSNP in a regional SNP-RTPCR experiment. Y(p): indicates a proxy SNP (r2 > 0.8) to BP SNP is an eSNP but not the strongest known eSNP. Observed effect directions in East Asian (EA), South Asian (SA), and African (A) ancestry individuals are coded + or − if concordant or discordant with directions in European ancestry results;

denotes significance controlling the FDR at 5% over 58 tests per ancestry (Supplementary Tables 5 and 12). Effect size estimates (beta) correspond to mmHg per coded allele for SBP and DBP and ln(odds) per coded allele for HTN.

CA = coded allele; NCA = non-coded allele; CAF = coded allele frequency; ? denotes missing data. Genomic positions use NCBI Build 36 coordinates.

Sixteen of these 29 associations were novel (Table 1). Two associations were near the FURIN and GOSR2 genes; prior targeted analyses of variants in these genes suggested they may be BP loci[7,8]. At the CACNB2 locus we validated association for a previously reported[6] SNP rs4373814 and detected a novel independent association for rs1813353 (pairwise r2 =0.015 in HapMap CEU). Of our 13 previously reported associations[5,6], only the association at PLCD3 was not supported by the current results (Supplementary Table 4). Some of the associations are in or near genes involved in pathways known to influence BP (NPR3, GUCY1A3-GUCY1B3, ADM, GNAS-EDN3, NPPA-NPPB, and CYP17A1; Supplementary Fig. 4). Twenty-two of the 28 loci did not contain genes that were a priori strong biological candidates. As expected from prior BP GWAS results, the effects of the novel variants on SBP and DBP were small (Fig. 1 and Table 1). For all variants, the observed directions of effects were concordant for SBP, DBP, and hypertension (Fig. 1, Table 1, Supplementary Fig. 3). Among the genes at the genome-wide significant loci, only CYP17A1, previously implicated in Mendelian congenital adrenal hyperplasia and hypertension, is known to harbour rare variants that have large effects on BP[9]. We performed several analyses to identify potential causal alleles and mechanisms. First, we looked up the 29 genome-wide significant index SNPs and their close proxies (r2>0.8) among cis-acting expression SNP (eSNP) results from multiple tissues (Supplementary Materials Section 5). For 13/29 index SNPs, we found association between nearby eSNP variants and expression level of at least one gene transcript (10−4 > p > 10−51, Supplementary Table 6). In 5 cases, the index BP SNP and the best eSNP from a genome-wide survey were identical, highlighting potential mediators of the SNP-BP associations. Second, because changes in protein sequence are strong a priori candidates to be functional, we sought non-synonymous coding SNPs that were in high LD (r2 >0.8) with the 29 index SNPs. We identified such SNPsat 8 loci (Table 1, Supplementary Materials Section 6, Supplementary Table 7). In addition we performed analyses testing for differences in genetic effect according to body mass index (BMI) or sex, and analyses of copy number variants, pathway enrichment, and metabolomic data, but we did not find any statistically significant results (Supplementary Materials Sections 7–9, Supplementary Tables 8–10). We evaluated whether the BP variants we identified in Europeans were associated with BP in individuals of East Asian (N=29,719), South Asian (N=23,977), and African (N=19,775) ancestries (Table 1, Supplementary Tables 11–13). We found significant associations in individuals of East Asian ancestry for SNPs at 9 loci and in individuals of South Asian ancestry for SNPs at 6 loci; some have been reported previously (Supplementary Tables 12 and 15). The lack of significant association for individual SNPs may reflect small sample sizes, differences in allele frequencies or LD patterns, imprecise imputation for some ancestries using existing reference samples, or a genuinely different underlying genetic architecture. Because of limited power to detect effects of individual variants in the smaller non-European samples, we created genetic risk scores for SBP and DBP incorporating all 29 BP variants weighted according to effect sizes observed in the European samples. In each non-European ancestry group, risk scores were strongly associated with SBP (P=1.1×10−40 in East Asian, P=2.9×10−13 in South Asian, P=9.8×10−4 in African ancestry individuals) and DBP (P=2.9×10−48, P=9.5×10−15, and P=5.3×10−5, respectively; Supplementary Table 13). We also created a genetic risk score to assess association of the variants in aggregate with hypertension and with clinical measures of hypertensive complications including left ventricular mass, left ventricular wall thickness, incident heart failure, incident and prevalent stroke, prevalent coronary artery disease (CAD), kidney disease, and measures of kidney function, using results from other GWAS consortia (Table 2, Supplementary Materials Sections 10–11, Supplementary Table 14). The risk score was weighted using the average of SBP and DBP effects for the 29 SNPs. In an independent sample of 23,294 women[10], an increase of 1 standard deviation in the genetic risk score was associated with a 21% increase in the odds of hypertension (95% CI 19%–28%; Table 2, Supplementary Table 14). Among individuals in the top decile of the risk score, the prevalence of hypertension was 29% compared with 16% in the bottom decile (odds ratio 2.09, 95% CI 1.86–2.36). Similar results were observed in an independent hypertension case-control sample (Table 2). In our study, individuals in the top compared to bottom quintiles of genetic risk score differed by 4.6 mm Hg SBP and 3.0 mm Hg DBP, differences that approach population-averaged BP treatment effects for a single antihypertensive agent[11]. Epidemiologic data have shown that differences in SBP and DBP of this magnitude, across the population range of BP, are associated with an increase in cardiovascular disease risk[3]. Consistent with this and in line with findings from randomized trials of BP-lowering medication in hypertensive patients[12,13], the genetic risk score was positively associated with left ventricular wall thickness (P=6.0×10−6), occurrence of stroke (P=3.3×10−5) and CAD (P=8.1×10−29). The same genetic risk score was not, however, significantly associated with chronic kidney disease or measures of kidney function, even though these renal outcomes were available in a similar sample size as for the other outcomes (Table 2). The absence of association with kidney phenotypes could be explained by a weaker causal relation of BP with kidney phenotypes than with CAD and stroke. This finding is consistent with the mismatch between observational data that show a positive association of BP with kidney disease, and clinical trial data that show inconsistent evidence of benefit of BP lowering on kidney disease prevention in patients with hypertension[14]. Thus, several lines of evidence converge to suggest that BP elevation may in part be a consequence rather than a cause of sub-clinical kidney disease.
Table 2

Genetic risk score and cardiovascular outcome association results

Association of genetic risk score (using all 29 SNPs at 28 loci, parameterised using the average of SBP and DBP effects [=(SBP effect + DBP effect)/2] from the discovery analysis), tested in results from other GWAS consortia.

PhenotypeSourceEffectSEP-value# SNPsContrast top vs. bottomN case/control or total


(per SD of genetic risk score)quintilesdeciles
Blood pressure phenotypes
SBP [mmHg]WGHS1.6450.098(a)6.5*10−63294.615.77(a)23,294

DBP [mmHg]WGHS1.0570.067(a)8.4*10−57292.963.71(a)23,294

Prevalent hypertensionWGHS0.2110.018(b)3.1*10−33291.802.09(b)5,018/18,276

Prevalent hypertensionBRIGHT0.2870.031(b)7.7*10−21292.232.74(b)2,406/1,990

Dichotomous endpoints
Incident heart failureCHARGE-HF0.0350.021(c)0.10291.101.13(c)2,526/18,400

Incident strokeNEURO-CHARGE0.1030.028(c)0.0002281.341.44(c)1,544/18,058

Prevalent strokeUK-US Stroke Collaborative Group(SCG)0.0750.037(b)0.05291.231.30(b)1,473/1,482

Stroke (combined, incident and prevalent)CHARGE & SCGNANANA3.3*10−5NANANANA3,017/19,540

Prevalent CADCARDIoGRAM0.0920.010(b)1.6*10−19281.291.38(b)22,233/64,726

Prevalent CADC4D ProCARDIS0.1320.022(b)2.2*10−9291.451.59(b)5,720/4,381

Prevalent CADC4D HPS0.0830.027(b)0.002291.261.34(b)2,704/2,804

Prevalent CAD (combined)CARDIoGRAM & C4D0.1000.009(b)8.1*10−29291.321.42(b)30,657/71,911

Prevalent chronic kidney diseaseCKDGen0.0140.015(b)0.35291.041.05(b)5,807/61,286

Prevalent microalbuminuriaCKDGen0.0080.019(b)0.68291.021.03(b)3,698/27,882

Continuous measures oftarget organ damage
Left ventricular mass [g]EchoGen0.8220.317(a)0.01292.302.89(a)12,612

Left ventricular wall thickness[cm]EchoGen0.0090.002(a)6.0*10−6290.030.03(a)12,612

Serum creatinineKidneyGen−0.0010.001(d)0.24291.001.00(d)23,812

eGFR (4 parameter MDRD equation)CKDGen−0.00010.0009(d)0.93291.001.00(d)67,093

Urinary albumin/creatinine ratioCKDGen0.0050.007(d)0.43291.011.02(d)31,580

Units are the unit of phenotypic measurement, either per SD of genetic risk score, or as a difference between top/bottom quintiles or deciles.

Units are ln(odds) per SD of genetic risk score, or odds ratio between top/bottom quintiles or deciles.

Units are ln(hazard) per SD of genetic risk score, or hazard ratio between top/bottom quintiles or deciles.

Units are ln(phenotype) per SD of genetic risk score, or phenotypic ratio between top/bottom quintiles or deciles.

Our discovery meta-analysis (Supplementary Fig. 2) suggests an excess of modestly significant (10−5

15] that there are 116 (95% CI 57–174) independent BP variants with effect sizes similar to those reported here, which collectively explain ≈2.2% of the phenotypic variance for SBP and DBP, compared with 0.9% explained by the 29 associations discovered thus far (Supplementary Fig. 6, Supplementary Materials Section 13). Most of the 28 BP loci harbour multiple genes (Supplementary Table 15, Supplementary Fig. 4), and although substantial research is required to identify the specific genes and variants responsible for these associations, several loci contain highly plausible biological candidates. The NPPA and NPPB genes at the MTHFR-NPPB locus encode precursors for atrial- and B-type natriuretic peptides (ANP, BNP), and previous work has identified SNPs, modestly correlated with our index SNP at this locus, that are associated with plasma ANP, BNP, and BP[16]. We found the index SNP at this locus was associated with opposite effects on BP and on ANP/BNP levels, consistent with a model in which the variants act through increased ANP/BNP production to lower BP[16] (Supplementary Materials Section 14). Two other loci identified in the current study harbour genes involved in natriuretic peptide and related nitric oxide signalling pathways,[17,18] both of which act to regulate cyclic guanosine monophosphate (cGMP). The first locus contains NPR3, which encodes the natriuretic peptide clearance receptor (NPR-C). NPR3 knockout mice exhibit reduced clearance of circulating natriuretic peptides and lower BP[19]. The second locus includes GUCY1A3 and GUCY1B3, encoding the alpha and beta subunits of soluble guanylatecyclase (sGC); knockout of either gene in murine models results in hypertension[20]. Another locus contains ADM, encoding adrenomedullin, which has natriuretic, vasodilatory, and BP-lowering properties[21]. At the GNAS-EDN3 locus, ZNF831 is closest to the index SNP, but GNAS and EDN3 are two nearby compelling biological candidates (Supplementary Fig. 4, Supplementary Table 15). We identified two loci with plausible connections to BP via genes implicated in renal physiology or kidney disease. At the first locus, SLC4A7 is an electro-neutral sodium bicarbonate co-transporter expressed in the nephron and in vascular smooth muscle[22]. At the second locus, PLCE1 (phospholipase-C-epsilon-1 isoform) is important for normal podocyte development in the glomerulus; sequence variation in PLCE1 has been implicated in familial nephrotic syndromes and end-stage kidney disease[23]. Missense variants in two genes involved in metal ion transport were associated with BP in our study. The first encodes a His/Asp change at amino acid 63 (H63D) in HFE and is a low penetrance allele for hereditary hemochromatosis[24]. The second is an Ala/Thr polymorphism located in exon 7 of SLC39A8, which encodes a zinc transporter that also transports cadmium and manganese[25]. The same allele of SLC39A8 associated with BP in our study has recently been associated with high-density lipoprotein (HDL) cholesterol levels[26] and BMI[27] (Supplementary Table 15). In conclusion, we have shown that 29 independent genetic variants influence BP in people of European ancestry. The variants reside in 28 loci, 16 of which were novel, and we confirmed association of several of them in individuals of non-European ancestry. A risk score derived from the 29 variants was significantly associated with BP-related organ damage and clinical cardiovascular disease, but not kidney disease. These loci improve our understanding of the genetic architecture of BP, provide new biological insights into BP control and may identify novel targets for the treatment of hypertension and the prevention of cardiovascular disease.

Methods summary

Supplementary Materials provide complete methods and include the following sections: study recruitment and phenotyping, adjustment for antihypertensive medications, genotyping, data quality control, genotype imputation, within-cohort association analyses, meta-analyses of discovery and validation stages, stratified analyses by sex and BMI, identification of eSNPs and nsSNPs, metabolomic and lipidomic analyses, CNV analyses, pathway analyses, analyses for non-European ancestries, association of a risk score with hypertension and cardiovascular disease, estimation of numbers of undiscovered variants, measurement of natriuretic peptides, and brief literature reviews and GWAS database lookups of all validated BP loci.
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2.  Blood pressure control in chronic kidney disease: is less really more?

Authors:  Julia B Lewis
Journal:  J Am Soc Nephrol       Date:  2010-06-24       Impact factor: 10.121

3.  A novel MHC class I-like gene is mutated in patients with hereditary haemochromatosis.

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Journal:  Nat Genet       Date:  1996-08       Impact factor: 38.330

4.  Purification and subunit composition of atrial natriuretic peptide receptor.

Authors:  D B Schenk; M N Phelps; J G Porter; F Fuller; B Cordell; J A Lewicki
Journal:  Proc Natl Acad Sci U S A       Date:  1987-03       Impact factor: 11.205

5.  Cloning, tissue distribution, genomic organization, and functional characterization of NBC3, a new member of the sodium bicarbonate cotransporter family.

Authors:  A Pushkin; N Abuladze; I Lee; D Newman; J Hwang; I Kurtz
Journal:  J Biol Chem       Date:  1999-06-04       Impact factor: 5.157

6.  The natriuretic peptide clearance receptor locally modulates the physiological effects of the natriuretic peptide system.

Authors:  N Matsukawa; W J Grzesik; N Takahashi; K N Pandey; S Pang; M Yamauchi; O Smithies
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7.  Fatal gastrointestinal obstruction and hypertension in mice lacking nitric oxide-sensitive guanylyl cyclase.

Authors:  Andreas Friebe; Evanthia Mergia; Oliver Dangel; Alexander Lange; Doris Koesling
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-23       Impact factor: 11.205

8.  Age-specific relevance of usual blood pressure to vascular mortality: a meta-analysis of individual data for one million adults in 61 prospective studies.

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Review 9.  Discovery of ZIP transporters that participate in cadmium damage to testis and kidney.

Authors:  Lei He; Bin Wang; Everett B Hay; Daniel W Nebert
Journal:  Toxicol Appl Pharmacol       Date:  2009-03-02       Impact factor: 4.219

10.  Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.

Authors:  Elizabeth K Speliotes; Cristen J Willer; Sonja I Berndt; Keri L Monda; Gudmar Thorleifsson; Anne U Jackson; Hana Lango Allen; Cecilia M Lindgren; Jian'an Luan; Reedik Mägi; Joshua C Randall; Sailaja Vedantam; Thomas W Winkler; Lu Qi; Tsegaselassie Workalemahu; Iris M Heid; Valgerdur Steinthorsdottir; Heather M Stringham; Michael N Weedon; Eleanor Wheeler; Andrew R Wood; Teresa Ferreira; Robert J Weyant; Ayellet V Segrè; Karol Estrada; Liming Liang; James Nemesh; Ju-Hyun Park; Stefan Gustafsson; Tuomas O Kilpeläinen; Jian Yang; Nabila Bouatia-Naji; Tõnu Esko; Mary F Feitosa; Zoltán Kutalik; Massimo Mangino; Soumya Raychaudhuri; Andre Scherag; Albert Vernon Smith; Ryan Welch; Jing Hua Zhao; Katja K Aben; Devin M Absher; Najaf Amin; Anna L Dixon; Eva Fisher; Nicole L Glazer; Michael E Goddard; Nancy L Heard-Costa; Volker Hoesel; Jouke-Jan Hottenga; Asa Johansson; Toby Johnson; Shamika Ketkar; Claudia Lamina; Shengxu Li; Miriam F Moffatt; Richard H Myers; Narisu Narisu; John R B Perry; Marjolein J Peters; Michael Preuss; Samuli Ripatti; Fernando Rivadeneira; Camilla Sandholt; Laura J Scott; Nicholas J Timpson; Jonathan P Tyrer; Sophie van Wingerden; Richard M Watanabe; Charles C White; Fredrik Wiklund; Christina Barlassina; Daniel I Chasman; Matthew N Cooper; John-Olov Jansson; Robert W Lawrence; Niina Pellikka; Inga Prokopenko; Jianxin Shi; Elisabeth Thiering; Helene Alavere; Maria T S Alibrandi; Peter Almgren; Alice M Arnold; Thor Aspelund; Larry D Atwood; Beverley Balkau; Anthony J Balmforth; Amanda J Bennett; Yoav Ben-Shlomo; Richard N Bergman; Sven Bergmann; Heike Biebermann; Alexandra I F Blakemore; Tanja Boes; Lori L Bonnycastle; Stefan R Bornstein; Morris J Brown; Thomas A Buchanan; Fabio Busonero; Harry Campbell; Francesco P Cappuccio; Christine Cavalcanti-Proença; Yii-Der Ida Chen; Chih-Mei Chen; Peter S Chines; Robert Clarke; Lachlan Coin; John Connell; Ian N M Day; Martin den Heijer; Jubao Duan; Shah Ebrahim; Paul Elliott; Roberto Elosua; Gudny Eiriksdottir; 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Lenore J Launer; Cecile Lecoeur; Terho Lehtimäki; Guillaume Lettre; Jianjun Liu; Marja-Liisa Lokki; Mattias Lorentzon; Robert N Luben; Barbara Ludwig; Paolo Manunta; Diana Marek; Michel Marre; Nicholas G Martin; Wendy L McArdle; Anne McCarthy; Barbara McKnight; Thomas Meitinger; Olle Melander; David Meyre; Kristian Midthjell; Grant W Montgomery; Mario A Morken; Andrew P Morris; Rosanda Mulic; Julius S Ngwa; Mari Nelis; Matt J Neville; Dale R Nyholt; Christopher J O'Donnell; Stephen O'Rahilly; Ken K Ong; Ben Oostra; Guillaume Paré; Alex N Parker; Markus Perola; Irene Pichler; Kirsi H Pietiläinen; Carl G P Platou; Ozren Polasek; Anneli Pouta; Suzanne Rafelt; Olli Raitakari; Nigel W Rayner; Martin Ridderstråle; Winfried Rief; Aimo Ruokonen; Neil R Robertson; Peter Rzehak; Veikko Salomaa; Alan R Sanders; Manjinder S Sandhu; Serena Sanna; Jouko Saramies; Markku J Savolainen; Susann Scherag; Sabine Schipf; Stefan Schreiber; Heribert Schunkert; Kaisa Silander; Juha Sinisalo; David S Siscovick; Jan H Smit; Nicole Soranzo; Ulla Sovio; Jonathan Stephens; Ida Surakka; Amy J Swift; Mari-Liis Tammesoo; Jean-Claude Tardif; Maris Teder-Laving; Tanya M Teslovich; John R Thompson; Brian Thomson; Anke Tönjes; Tiinamaija Tuomi; Joyce B J van Meurs; Gert-Jan van Ommen; Vincent Vatin; Jorma Viikari; Sophie Visvikis-Siest; Veronique Vitart; Carla I G Vogel; Benjamin F Voight; Lindsay L Waite; Henri Wallaschofski; G Bragi Walters; Elisabeth Widen; Susanna Wiegand; Sarah H Wild; Gonneke Willemsen; Daniel R Witte; Jacqueline C Witteman; Jianfeng Xu; Qunyuan Zhang; Lina Zgaga; Andreas Ziegler; Paavo Zitting; John P Beilby; I Sadaf Farooqi; Johannes Hebebrand; Heikki V Huikuri; Alan L James; Mika Kähönen; Douglas F Levinson; Fabio Macciardi; Markku S Nieminen; Claes Ohlsson; Lyle J Palmer; Paul M Ridker; Michael Stumvoll; Jacques S Beckmann; Heiner Boeing; Eric Boerwinkle; Dorret I Boomsma; Mark J Caulfield; Stephen J Chanock; Francis S Collins; L Adrienne Cupples; George Davey Smith; Jeanette Erdmann; Philippe Froguel; Henrik Grönberg; Ulf Gyllensten; Per Hall; Torben Hansen; Tamara B Harris; Andrew T Hattersley; Richard B Hayes; Joachim Heinrich; Frank B Hu; Kristian Hveem; Thomas Illig; Marjo-Riitta Jarvelin; Jaakko Kaprio; Fredrik Karpe; Kay-Tee Khaw; Lambertus A Kiemeney; Heiko Krude; Markku Laakso; Debbie A Lawlor; Andres Metspalu; Patricia B Munroe; Willem H Ouwehand; Oluf Pedersen; Brenda W Penninx; Annette Peters; Peter P Pramstaller; Thomas Quertermous; Thomas Reinehr; Aila Rissanen; Igor Rudan; Nilesh J Samani; Peter E H Schwarz; Alan R Shuldiner; Timothy D Spector; Jaakko Tuomilehto; Manuela Uda; André Uitterlinden; Timo T Valle; Martin Wabitsch; Gérard Waeber; Nicholas J Wareham; Hugh Watkins; James F Wilson; Alan F Wright; M Carola Zillikens; Nilanjan Chatterjee; Steven A McCarroll; Shaun Purcell; Eric E Schadt; Peter M Visscher; Themistocles L Assimes; Ingrid B Borecki; Panos Deloukas; Caroline S Fox; Leif C Groop; Talin Haritunians; David J Hunter; Robert C Kaplan; Karen L Mohlke; Jeffrey R O'Connell; Leena Peltonen; David Schlessinger; David P Strachan; Cornelia M van Duijn; H-Erich Wichmann; Timothy M Frayling; Unnur Thorsteinsdottir; Gonçalo R Abecasis; Inês Barroso; Michael Boehnke; Kari Stefansson; Kari E North; Mark I McCarthy; Joel N Hirschhorn; Erik Ingelsson; Ruth J F Loos
Journal:  Nat Genet       Date:  2010-10-10       Impact factor: 38.330

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Review 1.  Between candidate genes and whole genomes: time for alternative approaches in blood pressure genetics.

Authors:  Jacob Basson; Jeannette Simino; D C Rao
Journal:  Curr Hypertens Rep       Date:  2012-02       Impact factor: 5.369

Review 2.  Understanding the genetics of coronary artery disease through the lens of noninvasive imaging.

Authors:  Eunice Yang; Jose D Vargas; David A Bluemke
Journal:  Expert Rev Cardiovasc Ther       Date:  2012-01

3.  Multiple genetic variants explain measurable variance in type 2 diabetes-related traits in Pakistanis.

Authors:  M Islam; T H Jafar; A R Wood; N M G De Silva; M Caulfield; N Chaturvedi; T M Frayling
Journal:  Diabetologia       Date:  2012-04-28       Impact factor: 10.122

Review 4.  Under pressure: the search for the essential mechanisms of hypertension.

Authors:  Thomas M Coffman
Journal:  Nat Med       Date:  2011-11-07       Impact factor: 53.440

5.  Genome-Wide Gene-Potassium Interaction Analyses on Blood Pressure: The GenSalt Study (Genetic Epidemiology Network of Salt Sensitivity).

Authors:  Changwei Li; Jiang He; Jing Chen; Jinying Zhao; Dongfeng Gu; James E Hixson; Dabeeru C Rao; Cashell E Jaquish; Treva K Rice; Yun Ju Sung; Tanika N Kelly
Journal:  Circ Cardiovasc Genet       Date:  2017-12

6.  Type 2 Diabetes and Hypertension.

Authors:  Dianjianyi Sun; Tao Zhou; Yoriko Heianza; Xiang Li; Mengyu Fan; Vivian A Fonseca; Lu Qi
Journal:  Circ Res       Date:  2019-03-15       Impact factor: 17.367

7.  Burden of blood pressure-related alleles is associated with larger hematoma volume and worse outcome in intracerebral hemorrhage.

Authors:  Guido J Falcone; Alessandro Biffi; William J Devan; H Bart Brouwers; Christopher D Anderson; Valerie Valant; Alison M Ayres; Kristin Schwab; Natalia S Rost; Joshua N Goldstein; Anand Viswanathan; Steven M Greenberg; Magdy Selim; James F Meschia; Devin L Brown; Bradford B Worrall; Scott L Silliman; David L Tirschwell; Jonathan Rosand
Journal:  Stroke       Date:  2013-01-15       Impact factor: 7.914

8.  A nutrient-wide association study on blood pressure.

Authors:  Ioanna Tzoulaki; Chirag J Patel; Tomonori Okamura; Queenie Chan; Ian J Brown; Katsuyuki Miura; Hirotsugu Ueshima; Liancheng Zhao; Linda Van Horn; Martha L Daviglus; Jeremiah Stamler; Atul J Butte; John P A Ioannidis; Paul Elliott
Journal:  Circulation       Date:  2012-10-23       Impact factor: 29.690

9.  Common variant rs11191548 near the CYP17A1 gene is associated with hypertension and the serum 25(OH) D levels in Han Chinese.

Authors:  Ning Zhang; Jian Jia; Qiuju Ding; Huimei Chen; Xiaoman Ye; Haixia Ding; Yiyang Zhan
Journal:  J Hum Genet       Date:  2018-03-19       Impact factor: 3.172

10.  Predicting stroke through genetic risk functions: the CHARGE Risk Score Project.

Authors:  Carla A Ibrahim-Verbaas; Myriam Fornage; Joshua C Bis; Seung Hoan Choi; Bruce M Psaty; James B Meigs; Madhu Rao; Mike Nalls; Joao D Fontes; Christopher J O'Donnell; Sekar Kathiresan; Georg B Ehret; Caroline S Fox; Rainer Malik; Martin Dichgans; Helena Schmidt; Jari Lahti; Susan R Heckbert; Thomas Lumley; Kenneth Rice; Jerome I Rotter; Kent D Taylor; Aaron R Folsom; Eric Boerwinkle; Wayne D Rosamond; Eyal Shahar; Rebecca F Gottesman; Peter J Koudstaal; Najaf Amin; Renske G Wieberdink; Abbas Dehghan; Albert Hofman; André G Uitterlinden; Anita L Destefano; Stephanie Debette; Luting Xue; Alexa Beiser; Philip A Wolf; Charles Decarli; M Arfan Ikram; Sudha Seshadri; Thomas H Mosley; W T Longstreth; Cornelia M van Duijn; Lenore J Launer
Journal:  Stroke       Date:  2014-01-16       Impact factor: 7.914

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