Literature DB >> 21900609

Carbon monoxide poisoning is prevented by the energy costs of conformational changes in gas-binding haemproteins.

Svetlana V Antonyuk1, Neil Rustage, Christine A Petersen, Jamie L Arnst, Derren J Heyes, Raman Sharma, Neil G Berry, Nigel S Scrutton, Robert R Eady, Colin R Andrew, S Samar Hasnain.   

Abstract

Carbon monoxide (CO) is a product of haem metabolism and organisms must evolve strategies to prevent endogenous CO poisoning of haemoproteins. We show that energy costs associated with conformational changes play a key role in preventing irreversible CO binding. AxCYTcp is a member of a family of haem proteins that form stable 5c-NO and 6c-CO complexes but do not form O(2) complexes. Structure of the AxCYTcp-CO complex at 1.25 Å resolution shows that CO binds in two conformations moderated by the extent of displacement of the distal residue Leu16 toward the haem 7-propionate. The presence of two CO conformations is confirmed by cryogenic resonance Raman data. The preferred linear Fe-C-O arrangement (170 ± 8°) is accompanied by a flip of the propionate from the distal to proximal face of the haem. In the second conformation, the Fe-C-O unit is bent (158 ± 8°) with no flip of propionate. The energetic cost of the CO-induced Leu-propionate movements is reflected in a 600 mV (57.9 kJ mol(-1)) decrease in haem potential, a value in good agreement with density functional theory calculations. Substitution of Leu by Ala or Gly (structures determined at 1.03 and 1.04 Å resolutions) resulted in a haem site that binds CO in the linear mode only and where no significant change in redox potential is observed. Remarkably, these variants were isolated as ferrous 6c-CO complexes, attributable to the observed eight orders of magnitude increase in affinity for CO, including an approximately 10,000-fold decrease in the rate of dissociation. These new findings have wide implications for preventing CO poisoning of gas-binding haem proteins.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 21900609      PMCID: PMC3179090          DOI: 10.1073/pnas.1109051108

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  17 in total

1.  Is the CO adduct of myoglobin bent, and does it matter?

Authors:  T G Spiro; P M Kozlowski
Journal:  Acc Chem Res       Date:  2001-02       Impact factor: 22.384

2.  A steric mechanism for inhibition of CO binding to heme proteins.

Authors:  G S Kachalova; A N Popov; H D Bartunik
Journal:  Science       Date:  1999-04-16       Impact factor: 47.728

3.  Unprecedented proximal binding of nitric oxide to heme: implications for guanylate cyclase.

Authors:  D M Lawson; C E Stevenson; C R Andrew; R R Eady
Journal:  EMBO J       Date:  2000-11-01       Impact factor: 11.598

4.  X-ray structure of nitric oxide reductase (cytochrome P450nor) at atomic resolution.

Authors:  Hideaki Shimizu; Sam Yong Park; Yoshitsugu Shiro; Shin ichi Adachi
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2001-12-21

5.  Measurement of rate constants for reactions of O2, CO, and NO with hemoglobin.

Authors:  John S Olson; Erin W Foley; David H Maillett; Eden V Paster
Journal:  Methods Mol Med       Date:  2003

6.  Resonance Raman studies of cytochrome c' support the binding of NO and CO to opposite sides of the heme: implications for ligand discrimination in heme-based sensors.

Authors:  C R Andrew; E L Green; D M Lawson; R R Eady
Journal:  Biochemistry       Date:  2001-04-03       Impact factor: 3.162

7.  Experimentally restrained molecular dynamics simulations for characterizing the open states of cytochrome P450cam.

Authors:  Eliana K Asciutto; Marina Dang; Susan Sondej Pochapsky; Jeffry D Madura; Thomas C Pochapsky
Journal:  Biochemistry       Date:  2011-02-08       Impact factor: 3.162

8.  Visualizing breathing motion of internal cavities in concert with ligand migration in myoglobin.

Authors:  Ayana Tomita; Tokushi Sato; Kouhei Ichiyanagi; Shunsuke Nozawa; Hirohiko Ichikawa; Matthieu Chollet; Fumihiro Kawai; Sam-Yong Park; Takayuki Tsuduki; Takahisa Yamato; Shin-Ya Koshihara; Shin-Ichi Adachi
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-09       Impact factor: 11.205

9.  Probing the function of heme distortion in the H-NOX family.

Authors:  Charles Olea; Elizabeth M Boon; Patricia Pellicena; John Kuriyan; Michael A Marletta
Journal:  ACS Chem Biol       Date:  2008-11-21       Impact factor: 5.100

10.  Ligand migration and cavities within Scapharca Dimeric HbI: studies by time-resolved crystallo-graphy, Xe binding, and computational analysis.

Authors:  James E Knapp; Reinhard Pahl; Jordi Cohen; Jeffry C Nichols; Klaus Schulten; Quentin H Gibson; Vukica Srajer; William E Royer
Journal:  Structure       Date:  2009-11-11       Impact factor: 5.006

View more
  15 in total

1.  Folding helical proteins in explicit solvent using dihedral-biased tempering.

Authors:  Cheng Zhang; Jianpeng Ma
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-09       Impact factor: 11.205

2.  Structural and functional analyses of pyroglutamate-amyloid-β-specific antibodies as a basis for Alzheimer immunotherapy.

Authors:  Anke Piechotta; Christoph Parthier; Martin Kleinschmidt; Kathrin Gnoth; Thierry Pillot; Inge Lues; Hans-Ulrich Demuth; Stephan Schilling; Jens-Ulrich Rahfeld; Milton T Stubbs
Journal:  J Biol Chem       Date:  2017-06-16       Impact factor: 5.157

3.  A "sliding scale rule" for selectivity among NO, CO, and O₂ by heme protein sensors.

Authors:  Ah-Lim Tsai; Vladimir Berka; Emil Martin; John S Olson
Journal:  Biochemistry       Date:  2011-12-13       Impact factor: 3.162

4.  Hydrogen bonding of the dissociated histidine ligand is not required for formation of a proximal NO adduct in cytochrome c'.

Authors:  Dlzar D Ghafoor; Demet Kekilli; Gaylany H Abdullah; Florian S N Dworkowski; Hamid G Hassan; Michael T Wilson; Richard W Strange; Michael A Hough
Journal:  J Biol Inorg Chem       Date:  2015-06-23       Impact factor: 3.358

5.  Conformational control of the binding of diatomic gases to cytochrome c'.

Authors:  Andreea Manole; Demet Kekilli; Dimitri A Svistunenko; Michael T Wilson; Paul S Dobbin; Michael A Hough
Journal:  J Biol Inorg Chem       Date:  2015-03-20       Impact factor: 3.358

Review 6.  How do heme-protein sensors exclude oxygen? Lessons learned from cytochrome c', Nostoc puntiforme heme nitric oxide/oxygen-binding domain, and soluble guanylyl cyclase.

Authors:  Ah-Lim Tsai; Emil Martin; Vladimir Berka; John S Olson
Journal:  Antioxid Redox Signal       Date:  2012-04-10       Impact factor: 8.401

7.  Discrimination between CO and O(2) in heme oxygenase: comparison of static structures and dynamic conformation changes following CO photolysis.

Authors:  Masakazu Sugishima; Keith Moffat; Masato Noguchi
Journal:  Biochemistry       Date:  2012-10-18       Impact factor: 3.162

8.  NO* binds human cystathionine β-synthase quickly and tightly.

Authors:  João B Vicente; Henrique G Colaço; Marisa I S Mendes; Paolo Sarti; Paula Leandro; Alessandro Giuffrè
Journal:  J Biol Chem       Date:  2014-02-10       Impact factor: 5.157

9.  Distinguishing Nitro vs Nitrito Coordination in Cytochrome c' Using Vibrational Spectroscopy and Density Functional Theory.

Authors:  Zach N Nilsson; Brian L Mandella; Kakali Sen; Demet Kekilli; Michael A Hough; Pierre Moënne-Loccoz; Richard W Strange; Colin R Andrew
Journal:  Inorg Chem       Date:  2017-11-06       Impact factor: 5.165

10.  Functional importance of Glutamate-445 and Glutamate-99 in proton-coupled electron transfer during oxygen reduction by cytochrome bd from Escherichia coli.

Authors:  Ranjani Murali; Robert B Gennis
Journal:  Biochim Biophys Acta Bioenerg       Date:  2018-04-30       Impact factor: 3.991

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.