Literature DB >> 23043644

Discrimination between CO and O(2) in heme oxygenase: comparison of static structures and dynamic conformation changes following CO photolysis.

Masakazu Sugishima1, Keith Moffat, Masato Noguchi.   

Abstract

Heme oxygenase (HO) catalyzes heme degradation, one of its products being carbon monoxide (CO). It is well known that CO has a higher affinity for heme iron than does molecular oxygen (O(2)); therefore, CO is potentially toxic. Because O(2) is required for the HO reaction, HO must discriminate effectively between CO and O(2) and thus escape product inhibition. Previously, we demonstrated large conformational changes in the heme-HO-1 complex upon CO binding that arise from steric hindrance between CO bound to the heme iron and Gly-139. However, we have not yet identified those changes that are specific to CO binding and do not occur upon O(2) binding. Here we determine the crystal structure of the O(2)-bound form at 1.8 Å resolution and reveal the structural changes that are specific to CO binding. Moreover, difference Fourier maps comparing the structures before and after CO photolysis at <160 K clearly show structural changes such as movement of the distal F-helix upon CO photolysis. No such changes are observed upon O(2) photolysis, consistent with the structures of the ligand-free, O(2)-bound, and CO-bound forms. Protein motions even at cryogenic temperatures imply that the CO-bound heme-HO-1 complex is severely constrained (as in ligand binding to the T-state of hemoglobin), indicating that CO binding to the heme-HO-1 complex is specifically inhibited by steric hindrance. The difference Fourier maps also suggest new routes for CO migration.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 23043644      PMCID: PMC3548955          DOI: 10.1021/bi301175x

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  35 in total

Review 1.  The mechanism of heme oxygenase.

Authors:  P R Montellano
Journal:  Curr Opin Chem Biol       Date:  2000-04       Impact factor: 8.822

2.  The enzymatic conversion of heme to bilirubin by microsomal heme oxygenase.

Authors:  R Tenhunen; H S Marver; R Schmid
Journal:  Proc Natl Acad Sci U S A       Date:  1968-10       Impact factor: 11.205

3.  A new intermediate of heme degradation catalyzed by the heme oxygenase system.

Authors:  T Yoshida; M Noguchi; G Kikuchi
Journal:  J Biochem       Date:  1980-08       Impact factor: 3.387

4.  Direct observation of photolysis-induced tertiary structural changes in hemoglobin.

Authors:  Shin-Ichi Adachi; Sam-Yong Park; Jeremy R H Tame; Yoshitsugu Shiro; Naoya Shibayama
Journal:  Proc Natl Acad Sci U S A       Date:  2003-05-28       Impact factor: 11.205

5.  Visualizing breathing motion of internal cavities in concert with ligand migration in myoglobin.

Authors:  Ayana Tomita; Tokushi Sato; Kouhei Ichiyanagi; Shunsuke Nozawa; Hirohiko Ichikawa; Matthieu Chollet; Fumihiro Kawai; Sam-Yong Park; Takayuki Tsuduki; Takahisa Yamato; Shin-Ya Koshihara; Shin-Ichi Adachi
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-09       Impact factor: 11.205

6.  Crystal structures of ferrous and CO-, CN(-)-, and NO-bound forms of rat heme oxygenase-1 (HO-1) in complex with heme: structural implications for discrimination between CO and O2 in HO-1.

Authors:  Masakazu Sugishima; Hiroshi Sakamoto; Masato Noguchi; Keiichi Fukuyama
Journal:  Biochemistry       Date:  2003-08-26       Impact factor: 3.162

7.  Crystal structure of rat haem oxygenase-1 in complex with ferrous verdohaem: presence of a hydrogen-bond network on the distal side.

Authors:  Hideaki Sato; Masakazu Sugishima; Hiroshi Sakamoto; Yuichiro Higashimoto; Chizu Shimokawa; Keiichi Fukuyama; Graham Palmer; Masato Noguchi
Journal:  Biochem J       Date:  2009-04-15       Impact factor: 3.857

8.  Photolysis-induced structural changes in single crystals of carbonmonoxy myoglobin at 40 K.

Authors:  T Y Teng; V Srajer; K Moffat
Journal:  Nat Struct Biol       Date:  1994-10

9.  CAVER: a new tool to explore routes from protein clefts, pockets and cavities.

Authors:  Martin Petrek; Michal Otyepka; Pavel Banás; Pavlína Kosinová; Jaroslav Koca; Jirí Damborský
Journal:  BMC Bioinformatics       Date:  2006-06-22       Impact factor: 3.169

10.  MolProbity: all-atom structure validation for macromolecular crystallography.

Authors:  Vincent B Chen; W Bryan Arendall; Jeffrey J Headd; Daniel A Keedy; Robert M Immormino; Gary J Kapral; Laura W Murray; Jane S Richardson; David C Richardson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-12-21
View more
  2 in total

Review 1.  Carbon Monoxide and Nitric Oxide as Examples of the Youngest Class of Transmitters.

Authors:  Alicja Nowaczyk; Magdalena Kowalska; Jacek Nowaczyk; Grzegorz Grześk
Journal:  Int J Mol Sci       Date:  2021-06-02       Impact factor: 5.923

2.  Conformational Equilibrium of NADPH-Cytochrome P450 Oxidoreductase Is Essential for Heme Oxygenase Reaction.

Authors:  Masakazu Sugishima; Junichi Taira; Tatsuya Sagara; Ryota Nakao; Hideaki Sato; Masato Noguchi; Keiichi Fukuyama; Ken Yamamoto; Takuo Yasunaga; Hiroshi Sakamoto
Journal:  Antioxidants (Basel)       Date:  2020-07-28
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.