Literature DB >> 21898172

A model for dynamics of primer extension by eukaryotic DNA primase.

Ping Xie1.   

Abstract

A mathematical model is proposed for processive primer extension by eukaryotic DNA primase. The model uses available experimental data to predict rate constants for the dynamic behavior of primase activity as a function of NTP concentration. The model also predicts some data such as the binding affinities of the primase for the DNA template and for the RNA primer.

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Year:  2011        PMID： 21898172     DOI： 10.1007/s00249-011-0746-8

Source DB:  PubMed          Journal:  Eur Biophys J        ISSN： 0175-7571            Impact factor:   1.733


  23 in total

Review 1.  Eukaryotic DNA primase.

Authors:  B Arezi; R D Kuchta
Journal:  Trends Biochem Sci       Date:  2000-11       Impact factor: 13.807

Review 2.  DNA polymerase alpha.

Authors:  I R Lehman; L S Kaguni
Journal:  J Biol Chem       Date:  1989-03-15       Impact factor: 5.157

3.  A possible mechanism of processive nucleotide and repeat additions by the telomerase.

Authors:  Ping Xie
Journal:  Biosystems       Date:  2009-07-04       Impact factor: 1.973

4.  Intact DNA polymerase alpha/primase from mouse cells. Purification and structure.

Authors:  M Goulian; C J Heard
Journal:  J Biol Chem       Date:  1989-11-15       Impact factor: 5.157

5.  DNA polymerase-primase from embryos of Drosophila melanogaster. DNA primase subunits.

Authors:  S Cotterill; G Chui; I R Lehman
Journal:  J Biol Chem       Date:  1987-11-25       Impact factor: 5.157

6.  Rectified Brownian motion and kinesin motion along microtubules.

Authors:  R F Fox; M H Choi
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2001-04-06

7.  Interactions of DNA with human DNA primase monitored with photoactivatable cross-linking agents: implications for the role of the p58 subunit.

Authors:  B Arezi; B W Kirk; W C Copeland; R D Kuchta
Journal:  Biochemistry       Date:  1999-09-28       Impact factor: 3.162

8.  A model for the dynamics of mammalian family X DNA polymerases.

Authors:  Ping Xie
Journal:  J Theor Biol       Date:  2011-03-04       Impact factor: 2.691

Review 9.  Mechanism and evolution of DNA primases.

Authors:  Robert D Kuchta; Gudrun Stengel
Journal:  Biochim Biophys Acta       Date:  2009-06-21

Review 10.  Regulation of bacterial priming and daughter strand synthesis through helicase-primase interactions.

Authors:  Jacob E Corn; James M Berger
Journal:  Nucleic Acids Res       Date:  2006-08-25       Impact factor: 16.971
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  2 in total

1.  Mechanism of Concerted RNA-DNA Primer Synthesis by the Human Primosome.

Authors:  Andrey G Baranovskiy; Nigar D Babayeva; Yinbo Zhang; Jianyou Gu; Yoshiaki Suwa; Youri I Pavlov; Tahir H Tahirov
Journal:  J Biol Chem       Date:  2016-03-14       Impact factor: 5.157

Review 2.  Structures to complement the archaeo-eukaryotic primases catalytic cycle description: What's next?

Authors:  Julien Boudet; Jean-Christophe Devillier; Frédéric H-T Allain; Georg Lipps
Journal:  Comput Struct Biotechnol J       Date:  2015-05-02       Impact factor: 7.271
  2 in total

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