Literature DB >> 21896714

Direct measurements of DNA-mediated colloidal interactions and their quantitative modeling.

W Benjamin Rogers1, John C Crocker.   

Abstract

DNA bridging can be used to induce specific attractions between small particles, providing a highly versatile approach to creating unique particle-based materials having a variety of periodic structures. Surprisingly, given the fact that the thermodynamics of DNA strands in solution are completely understood, existing models for DNA-induced particle interactions are typically in error by more than an order of magnitude in strength and a factor of two in their temperature dependence. This discrepancy has stymied efforts to design the complex temperature, sequence and time-dependent interactions needed for the most interesting applications, such as materials having highly complex or multicomponent microstructures or the ability to reconfigure or self-replicate. Here we report high-spatial resolution measurements of DNA-induced interactions between pairs of polystyrene microspheres at binding strengths comparable to those used in self-assembly experiments, up to 6 k(B)T. We also describe a conceptually straightforward and numerically tractable model that quantitatively captures the separation dependence and temperature-dependent strength of these DNA-induced interactions, without empirical corrections. This model was equally successful when describing the more complex and practically relevant case of grafted DNA brushes with self-interactions that compete with interparticle bridge formation. Together, our findings motivate a nanomaterial design approach where unique functional structures can be found computationally and then reliably realized in experiment.

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Year:  2011        PMID: 21896714      PMCID: PMC3179119          DOI: 10.1073/pnas.1109853108

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  29 in total

1.  DNA-programmable nanoparticle crystallization.

Authors:  Sung Yong Park; Abigail K R Lytton-Jean; Byeongdu Lee; Steven Weigand; George C Schatz; Chad A Mirkin
Journal:  Nature       Date:  2008-01-31       Impact factor: 49.962

2.  Nanomaterials: golden handshake.

Authors:  John C Crocker
Journal:  Nature       Date:  2008-01-31       Impact factor: 49.962

3.  Probing interfacial equilibration in microsphere crystals formed by DNA-directed assembly.

Authors:  Anthony J Kim; Raynaldo Scarlett; Paul L Biancaniello; Talid Sinno; John C Crocker
Journal:  Nat Mater       Date:  2008-11-30       Impact factor: 43.841

4.  Simple quantitative model for the reversible association of DNA coated colloids.

Authors:  Rémi Dreyfus; Mirjam E Leunissen; Roujie Sha; Alexei V Tkachenko; Nadrian C Seeman; David J Pine; Paul M Chaikin
Journal:  Phys Rev Lett       Date:  2009-01-27       Impact factor: 9.161

5.  Manipulating DNA probe presentation via enzymatic cleavage of diluent strands.

Authors:  Christopher K Tison; Valeria T Milam
Journal:  Biomacromolecules       Date:  2008-08-21       Impact factor: 6.988

6.  Quantitative study of the association thermodynamics and kinetics of DNA-coated particles for different functionalization schemes.

Authors:  Mirjam E Leunissen; Remi Dreyfus; Roujie Sha; Nadrian C Seeman; Paul M Chaikin
Journal:  J Am Chem Soc       Date:  2010-02-17       Impact factor: 15.419

7.  Switchable self-protected attractions in DNA-functionalized colloids.

Authors:  Mirjam E Leunissen; Rémi Dreyfus; Fook Chiong Cheong; David G Grier; Roujie Sha; Nadrian C Seeman; Paul M Chaikin
Journal:  Nat Mater       Date:  2009-06-14       Impact factor: 43.841

8.  Long-time stretched exponential kinetics in single DNA duplex dissociation.

Authors:  Paul L Biancaniello; Anthony J Kim; John C Crocker
Journal:  Biophys J       Date:  2007-10-05       Impact factor: 4.033

9.  Switching binary states of nanoparticle superlattices and dimer clusters by DNA strands.

Authors:  Mathew M Maye; Mudalige Thilak Kumara; Dmytro Nykypanchuk; William B Sherman; Oleg Gang
Journal:  Nat Nanotechnol       Date:  2009-12-20       Impact factor: 39.213

10.  Turning the 10-23 DNAzyme on and off with light.

Authors:  Julia L Richards; Garry K Seward; Yu-Hsiu Wang; Ivan J Dmochowski
Journal:  Chembiochem       Date:  2010-02-15       Impact factor: 3.164

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  26 in total

1.  Predicting DNA-mediated colloidal pair interactions.

Authors:  Bortolo M Mognetti; Patrick Varilly; Stefano Angioletti-Uberti; Francisco J Martinez-Veracoechea; Jure Dobnikar; Mirjam E Leunissen; Daan Frenkel
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-27       Impact factor: 11.205

2.  Designing DNA-grafted particles that self-assemble into desired crystalline structures using the genetic algorithm.

Authors:  Babji Srinivasan; Thi Vo; Yugang Zhang; Oleg Gang; Sanat Kumar; Venkat Venkatasubramanian
Journal:  Proc Natl Acad Sci U S A       Date:  2013-10-28       Impact factor: 11.205

3.  Size limits of self-assembled colloidal structures made using specific interactions.

Authors:  Zorana Zeravcic; Vinothan N Manoharan; Michael P Brenner
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-27       Impact factor: 11.205

4.  Stoichiometric control of DNA-grafted colloid self-assembly.

Authors:  Thi Vo; Venkat Venkatasubramanian; Sanat Kumar; Babji Srinivasan; Suchetan Pal; Yugang Zhang; Oleg Gang
Journal:  Proc Natl Acad Sci U S A       Date:  2015-04-06       Impact factor: 11.205

5.  Driving diffusionless transformations in colloidal crystals using DNA handshaking.

Authors:  Marie T Casey; Raynaldo T Scarlett; W Benjamin Rogers; Ian Jenkins; Talid Sinno; John C Crocker
Journal:  Nat Commun       Date:  2012       Impact factor: 14.919

6.  Specific and reversible DNA-directed self-assembly of oil-in-water emulsion droplets.

Authors:  Maik Hadorn; Eva Boenzli; Kristian T Sørensen; Harold Fellermann; Peter Eggenberger Hotz; Martin M Hanczyc
Journal:  Proc Natl Acad Sci U S A       Date:  2012-11-21       Impact factor: 11.205

7.  A geometrical approach to computing free-energy landscapes from short-ranged potentials.

Authors:  Miranda Holmes-Cerfon; Steven J Gortler; Michael P Brenner
Journal:  Proc Natl Acad Sci U S A       Date:  2012-12-17       Impact factor: 11.205

8.  Polygamous particles.

Authors:  Kun-Ta Wu; Lang Feng; Ruojie Sha; Rémi Dreyfus; Alexander Y Grosberg; Nadrian C Seeman; Paul M Chaikin
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-24       Impact factor: 11.205

9.  Arrested demixing opens route to bigels.

Authors:  Francesco Varrato; Lorenzo Di Michele; Maxim Belushkin; Nicolas Dorsaz; Simon H Nathan; Erika Eiser; Giuseppe Foffi
Journal:  Proc Natl Acad Sci U S A       Date:  2012-11-05       Impact factor: 11.205

10.  Hydrodynamics selects the pathway for displacive transformations in DNA-linked colloidal crystallites.

Authors:  Ian C Jenkins; Marie T Casey; James T McGinley; John C Crocker; Talid Sinno
Journal:  Proc Natl Acad Sci U S A       Date:  2014-03-17       Impact factor: 11.205

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