Literature DB >> 21885307

Triple resonance three-dimensional protein NMR: before it became a black box.

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Abstract

Three-dimensional triple resonance experiments have become an integral part of virtually every solution NMR study of proteins. The approach relies on uniform isotopic enrichment of proteins with (13)C and (15)N, and establishes the scalar connectivity pathway between nuclei through the large (1)J(NH), (1)J(CH)(, 1)J(CC), and (1)J(CN) couplings. The magnetization transfer process takes place through multiple, efficient one-bond magnetization transfer steps, rather than a single step through the smaller and variable (3)J(HH) couplings. The relatively large size and good uniformity of the one-bond couplings allowed the design of efficient magnetization transfer schemes that are effectively uniform across a given protein, nearly independent of conformation. Although conceptually straightforward, practical implementation of three-dimensional triple resonance experiments on proteins originally posed serious challenges. This account provides a personal perspective on some of the historical background to this work, the problems encountered as well as their solutions, and their evolution into today's standard arsenal of experiments.
Copyright © 2011. Published by Elsevier Inc.

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Year:  2011        PMID: 21885307      PMCID: PMC3235243          DOI: 10.1016/j.jmr.2011.08.003

Source DB:  PubMed          Journal:  J Magn Reson        ISSN: 1090-7807            Impact factor:   2.229


  15 in total

Review 1.  Determination of three-dimensional structures of proteins and nucleic acids in solution by nuclear magnetic resonance spectroscopy.

Authors:  G M Clore; A M Gronenborn
Journal:  Crit Rev Biochem Mol Biol       Date:  1989       Impact factor: 8.250

2.  An efficient NMR approach for obtaining sequence-specific resonance assignments of larger proteins based on multiple isotopic labeling.

Authors:  M Ikura; M Krinks; D A Torchia; A Bax
Journal:  FEBS Lett       Date:  1990-06-18       Impact factor: 4.124

3.  Nuclear magnetic resonance observation and dynamics of specific amide protons in T4 lysozyme.

Authors:  R H Griffey; A G Redfield; R E Loomis; F W Dahlquist
Journal:  Biochemistry       Date:  1985-02-12       Impact factor: 3.162

4.  Two-dimensional NMR approaches to the study of protein structure and function.

Authors:  J L Markley; W M Westler; T M Chan; C L Kojiro; E L Ulrich
Journal:  Fed Proc       Date:  1984-08

5.  Sequential resonance assignments as a basis for determination of spatial protein structures by high resolution proton nuclear magnetic resonance.

Authors:  K Wüthrich; G Wider; G Wagner; W Braun
Journal:  J Mol Biol       Date:  1982-03-05       Impact factor: 5.469

6.  Assignment of the three methionyl carbonyl carbon resonances in Streptomyces subtilisin inhibitor by a carbon-13 and nitrogen-15 double-labeling technique. A new strategy for structural studies of proteins in solution.

Authors:  M Kainosho; T Tsuji
Journal:  Biochemistry       Date:  1982-11-23       Impact factor: 3.162

7.  Overcoming the overlap problem in the assignment of 1H NMR spectra of larger proteins by use of three-dimensional heteronuclear 1H-15N Hartmann-Hahn-multiple quantum coherence and nuclear Overhauser-multiple quantum coherence spectroscopy: application to interleukin 1 beta.

Authors:  D Marion; P C Driscoll; L E Kay; P T Wingfield; A Bax; A M Gronenborn; G M Clore
Journal:  Biochemistry       Date:  1989-07-25       Impact factor: 3.162

8.  Nitrogen-15-labeled yeast tRNAPhe: double and two-dimensional heteronuclear NMR of guanosine and uracil ring NH groups.

Authors:  S Roy; M Z Papastavros; V Sanchez; A G Redfield
Journal:  Biochemistry       Date:  1984-09-11       Impact factor: 3.162

9.  Nuclear magnetic resonance studies on calmodulin: calcium-induced conformational change.

Authors:  M Ikura; T Hiraoki; K Hikichi; T Mikuni; M Yazawa; K Yagi
Journal:  Biochemistry       Date:  1983-05-10       Impact factor: 3.162

10.  A novel approach for sequential assignment of 1H, 13C, and 15N spectra of proteins: heteronuclear triple-resonance three-dimensional NMR spectroscopy. Application to calmodulin.

Authors:  M Ikura; L E Kay; A Bax
Journal:  Biochemistry       Date:  1990-05-15       Impact factor: 3.162

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  4 in total

1.  Structural insights into the histone H1-nucleosome complex.

Authors:  Bing-Rui Zhou; Hanqiao Feng; Hidenori Kato; Liang Dai; Yuedong Yang; Yaoqi Zhou; Yawen Bai
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-11       Impact factor: 11.205

2.  The role of individual carbohydrate-binding sites in the function of the potent anti-HIV lectin griffithsin.

Authors:  Jie Xue; Yongguang Gao; Bart Hoorelbeke; Ioannis Kagiampakis; Bo Zhao; Borries Demeler; Jan Balzarini; Patricia J Liwang
Journal:  Mol Pharm       Date:  2012-08-21       Impact factor: 4.939

3.  Solution structure, membrane interactions, and protein binding partners of the tetraspanin Sm-TSP-2, a vaccine antigen from the human blood fluke Schistosoma mansoni.

Authors:  Xinying Jia; Leigh Schulte; Alex Loukas; Darren Pickering; Mark Pearson; Mehdi Mobli; Alun Jones; Karl J Rosengren; Norelle L Daly; Geoffrey N Gobert; Malcolm K Jones; David J Craik; Jason Mulvenna
Journal:  J Biol Chem       Date:  2014-01-15       Impact factor: 5.157

4.  Structure and function of human DnaJ homologue subfamily a member 1 (DNAJA1) and its relationship to pancreatic cancer.

Authors:  Jaime L Stark; Kamiya Mehla; Nina Chaika; Thomas B Acton; Rong Xiao; Pankaj K Singh; Gaetano T Montelione; Robert Powers
Journal:  Biochemistry       Date:  2014-02-19       Impact factor: 3.162

  4 in total

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