Literature DB >> 21881830

Prognostic value of free DNA quantification in serum and cerebrospinal fluid in glioma patients.

Wei Shi1, Chenglin Lv, Jing Qi, Wei Zhao, Xiujie Wu, Rongrong Jing, Xinhua Wu, Shaoqing Ju, Jian Chen.   

Abstract

Unlike uniformly truncated DNA released from apoptotic nondiseased cells, free DNA released from dead tumor cells varies in size. Free DNA has been considered as a candidate biomarker for malignant tumors. We obtained serum samples from 70 patients with glioma and 22 healthy volunteers as control and cerebrospinal fluid (CSF) samples from 20 patients with glioma and eight nonneoplastic controls with hydrocephalus or arachnoid cyst and performed preoperative analysis of free DNA concentration and integrity by a quantitative polymerase chain reaction. With two primers sets amplifying short and long free DNA fragments (ALU115 and ALU247), free DNA integrity was determined by ratio of the concentration of ALU247 over ALU115 (ALU247/115). Our results indicate that free DNA integrity and the ratio of long fragments to short fragments may be a useful diagnostic assay for glioma. In summary, the CSF-free DNA concentration and integrity may serve as a new marker for the diagnosis of glioma.

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Year:  2011        PMID: 21881830     DOI: 10.1007/s12031-011-9617-0

Source DB:  PubMed          Journal:  J Mol Neurosci        ISSN: 0895-8696            Impact factor:   3.444


  18 in total

1.  Increased integrity of circulating cell-free DNA in plasma of patients with acute leukemia.

Authors:  Yu-Jie Gao; Yu-Juan He; Zai-Lin Yang; Hui-Yuan Shao; Yan Zuo; Yao Bai; Hui Chen; Xian-Chun Chen; Feng-Xian Qin; Shi Tan; Jian Wang; Li Wang; Ling Zhang
Journal:  Clin Chem Lab Med       Date:  2010-09-13       Impact factor: 3.694

Review 2.  Overview of cell death signaling pathways.

Authors:  Zhaoyu Jin; Wafik S El-Deiry
Journal:  Cancer Biol Ther       Date:  2005-02-27       Impact factor: 4.742

3.  Quantification of free circulating tumor DNA as a diagnostic marker for breast cancer.

Authors:  Raquel Catarino; Maria M Ferreira; Helena Rodrigues; Ana Coelho; Ana Nogal; Abreu Sousa; Rui Medeiros
Journal:  DNA Cell Biol       Date:  2008-08       Impact factor: 3.311

4.  DNA fragments in the blood plasma of cancer patients: quantitations and evidence for their origin from apoptotic and necrotic cells.

Authors:  S Jahr; H Hentze; S Englisch; D Hardt; F O Fackelmayer; R D Hesch; R Knippers
Journal:  Cancer Res       Date:  2001-02-15       Impact factor: 12.701

5.  Prediction of breast tumor progression by integrity of free circulating DNA in serum.

Authors:  Naoyuki Umetani; Armando E Giuliano; Suzanne H Hiramatsu; Farin Amersi; Taku Nakagawa; Silvana Martino; Dave S B Hoon
Journal:  J Clin Oncol       Date:  2006-09-10       Impact factor: 44.544

6.  Serum DNA can define tumor-specific genetic and epigenetic markers in gliomas of various grades.

Authors:  Iris Lavon; Miri Refael; Bracha Zelikovitch; Edna Shalom; Tali Siegal
Journal:  Neuro Oncol       Date:  2010-02-01       Impact factor: 12.300

7.  Quantification of free circulating DNA as a diagnostic marker in lung cancer.

Authors:  Gabriella Sozzi; Davide Conte; MariaElena Leon; Rosalia Ciricione; Luca Roz; Cathy Ratcliffe; Elena Roz; Nicola Cirenei; Massimo Bellomi; Giuseppe Pelosi; Marco A Pierotti; Ugo Pastorino
Journal:  J Clin Oncol       Date:  2003-09-24       Impact factor: 44.544

8.  Increased plasma DNA integrity in cancer patients.

Authors:  Brant G Wang; Han-Yao Huang; Yu-Chi Chen; Robert E Bristow; Keyanunoosh Kassauei; Chih-Chien Cheng; Richard Roden; Lori J Sokoll; Daniel W Chan; Ie-Ming Shih
Journal:  Cancer Res       Date:  2003-07-15       Impact factor: 12.701

9.  Methylated tumor-specific DNA as a plasma biomarker in patients with glioma.

Authors:  Kyle D Weaver; Stuart A Grossman; James G Herman
Journal:  Cancer Invest       Date:  2006-02       Impact factor: 2.176

10.  Cell-free DNA in human blood plasma: length measurements in patients with pancreatic cancer and healthy controls.

Authors:  M B Giacona; G C Ruben; K A Iczkowski; T B Roos; D M Porter; G D Sorenson
Journal:  Pancreas       Date:  1998-07       Impact factor: 3.327

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  16 in total

1.  Detection of serum Alu element hypomethylation for the diagnosis and prognosis of glioma.

Authors:  Jian Chen; Mingjie Gong; Shendong Lu; Futian Liu; Liang Xia; Dekang Nie; Feihui Zou; Jinlong Shi; Shaoqing Ju; Longxiang Zhao; Hao Zuo; Jing Qi; Wei Shi
Journal:  J Mol Neurosci       Date:  2013-05-10       Impact factor: 3.444

2.  An intrinsic DFF40/CAD endonuclease deficiency impairs oligonucleosomal DNA hydrolysis during caspase-dependent cell death: a common trait in human glioblastoma cells.

Authors:  María Sánchez-Osuna; Laura Martínez-Escardó; Carla Granados-Colomina; Fina Martínez-Soler; Sònia Pascual-Guiral; Victoria Iglesias-Guimarais; Roser Velasco; Gerard Plans; Noemi Vidal; Avelina Tortosa; Carlos Barcia; Jordi Bruna; Victor J Yuste
Journal:  Neuro Oncol       Date:  2016-01-10       Impact factor: 12.300

Review 3.  Proteomic analysis of cerebrospinal fluid: toward the identification of biomarkers for gliomas.

Authors:  Fang Shen; Yang Zhang; Yu Yao; Wei Hua; Hai-Shi Zhang; Jing-Song Wu; Ping Zhong; Liang-Fu Zhou
Journal:  Neurosurg Rev       Date:  2014-05-01       Impact factor: 3.042

Review 4.  The Utility of Liquid Biopsy in Central Nervous System Malignancies.

Authors:  Kathryn S Nevel; Jessica A Wilcox; Lindsay J Robell; Yoshie Umemura
Journal:  Curr Oncol Rep       Date:  2018-06-06       Impact factor: 5.075

5.  Plasma DNA integrity index as a potential molecular diagnostic marker for breast cancer.

Authors:  Azza M Kamel; Salwa Teama; Amal Fawzy; Mervat El Deftar
Journal:  Tumour Biol       Date:  2015-12-18

6.  Brain tumor mutations detected in cerebral spinal fluid.

Authors:  Wenying Pan; Wei Gu; Seema Nagpal; Melanie Hayden Gephart; Stephen R Quake
Journal:  Clin Chem       Date:  2015-01-20       Impact factor: 8.327

7.  Characterization of cell-free circulating DNA in plasma in patients with prostate cancer.

Authors:  Pâmela Oliveira Delgado; Beatriz Costa A Alves; Flávia de Sousa Gehrke; Renata Kelly Kuniyoshi; Marcelo Langer Wroclavski; Auro Del Giglio; Fernando Luiz Affonso Fonseca
Journal:  Tumour Biol       Date:  2012-12-27

Review 8.  ctDNA-Based Liquid Biopsy of Cerebrospinal Fluid in Brain Cancer.

Authors:  Laura Escudero; Francisco Martínez-Ricarte; Joan Seoane
Journal:  Cancers (Basel)       Date:  2021-04-21       Impact factor: 6.639

9.  Circulating Exosomal-DNA in Glioma Patients: A Quantitative Study and Histopathological Correlations-A Preliminary Study.

Authors:  Amedeo Piazza; Paolo Rosa; Luca Ricciardi; Antonella Mangraviti; Luca Pacini; Antonella Calogero; Antonino Raco; Massimo Miscusi
Journal:  Brain Sci       Date:  2022-04-14

10.  Alu methylation serves as a biomarker for non-invasive diagnosis of glioma.

Authors:  Jian Chen; Wei Huan; Hao Zuo; Longxiang Zhao; Chuanjun Huang; Xiaojiang Liu; Shiqiang Hou; Jing Qi; Wei Shi
Journal:  Oncotarget       Date:  2016-05-03
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