Literature DB >> 21880480

Mass spectrometry: come of age for structural and dynamical biology.

Justin L P Benesch1, Brandon T Ruotolo.   

Abstract

Over the past two decades, mass spectrometry (MS) has emerged as a bone fide approach for structural biology. MS can inform on all levels of protein organization, and enables quantitative assessments of their intrinsic dynamics. The key advantages of MS are that it is a sensitive, high-resolution separation technique with wide applicability, and thereby allows the interrogation of transient protein assemblies in the context of complex mixtures. Here we describe how molecular-level information is derived from MS experiments, and how it can be combined with spatial and dynamical restraints obtained from other structural biology approaches to allow hybrid studies of protein architecture and movements.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 21880480      PMCID: PMC3193349          DOI: 10.1016/j.sbi.2011.08.002

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  83 in total

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2.  Quaternary dynamics of αB-crystallin as a direct consequence of localised tertiary fluctuations in the C-terminus.

Authors:  Andrew J Baldwin; Gillian R Hilton; Hadi Lioe; Claire Bagnéris; Justin L P Benesch; Lewis E Kay
Journal:  J Mol Biol       Date:  2011-08-03       Impact factor: 5.469

3.  A two-site mechanism for the inhibition of IAPP amyloidogenesis by zinc.

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Journal:  J Mol Biol       Date:  2011-05-17       Impact factor: 5.469

4.  Molecular evolution, intracellular organization, and the quinary structure of proteins.

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Journal:  Proc Natl Acad Sci U S A       Date:  1982-05       Impact factor: 11.205

5.  Revealing the quaternary structure of a heterogeneous noncovalent protein complex through surface-induced dissociation.

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Journal:  Anal Chem       Date:  2011-03-21       Impact factor: 6.986

6.  Amyloid-β protein oligomerization and the importance of tetramers and dodecamers in the aetiology of Alzheimer's disease.

Authors:  Summer L Bernstein; Nicholas F Dupuis; Noel D Lazo; Thomas Wyttenbach; Margaret M Condron; Gal Bitan; David B Teplow; Joan-Emma Shea; Brandon T Ruotolo; Carol V Robinson; Michael T Bowers
Journal:  Nat Chem       Date:  2009-07       Impact factor: 24.427

7.  Retinol and retinol-binding protein stabilize transthyretin via formation of retinol transport complex.

Authors:  Suk-Joon Hyung; Stéphanie Deroo; Carol V Robinson
Journal:  ACS Chem Biol       Date:  2010-10-07       Impact factor: 5.100

Review 8.  The structural dynamics of macromolecular processes.

Authors:  Daniel Russel; Keren Lasker; Jeremy Phillips; Dina Schneidman-Duhovny; Javier A Velázquez-Muriel; Andrej Sali
Journal:  Curr Opin Cell Biol       Date:  2009-02-14       Impact factor: 8.382

Review 9.  Probing native protein structures by chemical cross-linking, mass spectrometry, and bioinformatics.

Authors:  Alexander Leitner; Thomas Walzthoeni; Abdullah Kahraman; Franz Herzog; Oliver Rinner; Martin Beck; Ruedi Aebersold
Journal:  Mol Cell Proteomics       Date:  2010-03-31       Impact factor: 5.911

10.  Mass spectrometry of membrane transporters reveals subunit stoichiometry and interactions.

Authors:  Nelson P Barrera; Shoshanna C Isaacson; Min Zhou; Vassiliy N Bavro; Alex Welch; Theresia A Schaedler; Markus A Seeger; Ricardo Núñez Miguel; Vladimir M Korkhov; Hendrik W van Veen; Henrietta Venter; Adrian R Walmsley; Christopher G Tate; Carol V Robinson
Journal:  Nat Methods       Date:  2009-07-05       Impact factor: 28.547

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  98 in total

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Journal:  J Am Soc Mass Spectrom       Date:  2015-09-14       Impact factor: 3.109

2.  Ion Mobility-Mass Spectrometry Reveals Highly-Compact Intermediates in the Collision Induced Dissociation of Charge-Reduced Protein Complexes.

Authors:  Russell E Bornschein; Shuai Niu; Joseph Eschweiler; Brandon T Ruotolo
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3.  Multiple gas-phase conformations of proline-containing peptides: is it always cis/trans isomerization?

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4.  Folding of Protein Ions in the Gas Phase after Cation-to-Anion Proton-Transfer Reactions.

Authors:  Kenneth J Laszlo; Eleanor B Munger; Matthew F Bush
Journal:  J Am Chem Soc       Date:  2016-07-21       Impact factor: 15.419

5.  Interpreting the Collision Cross Sections of Native-like Protein Ions: Insights from Cation-to-Anion Proton-Transfer Reactions.

Authors:  Kenneth J Laszlo; Matthew F Bush
Journal:  Anal Chem       Date:  2017-07-07       Impact factor: 6.986

6.  Native MS Analysis of Bacteriorhodopsin and an Empty Nanodisc by Orthogonal Acceleration Time-of-Flight, Orbitrap and Ion Cyclotron Resonance.

Authors:  Iain D G Campuzano; Huilin Li; Dhanashri Bagal; Jennifer L Lippens; Juraj Svitel; Robert J M Kurzeja; Han Xu; Paul D Schnier; Joseph A Loo
Journal:  Anal Chem       Date:  2016-12-01       Impact factor: 6.986

7.  Surface induced dissociation yields quaternary substructure of refractory noncovalent phosphorylase B and glutamate dehydrogenase complexes.

Authors:  Xin Ma; Mowei Zhou; Vicki H Wysocki
Journal:  J Am Soc Mass Spectrom       Date:  2014-01-23       Impact factor: 3.109

8.  The potential impact of recent developments in three-dimensional quantitative interaction proteomics on structural biology.

Authors:  Nurcan Tuncbag; Attila Gursoy; Ozlem Keskin; Ruth Nussinov
Journal:  Expert Rev Proteomics       Date:  2016-05       Impact factor: 3.940

9.  Gas-Phase Analysis of the Complex of Fibroblast GrowthFactor 1 with Heparan Sulfate: A Traveling Wave Ion Mobility Spectrometry (TWIMS) and Molecular Modeling Study.

Authors:  Yuejie Zhao; Arunima Singh; Yongmei Xu; Chengli Zong; Fuming Zhang; Geert-Jan Boons; Jian Liu; Robert J Linhardt; Robert J Woods; I Jonathan Amster
Journal:  J Am Soc Mass Spectrom       Date:  2016-09-23       Impact factor: 3.109

10.  Traveling-wave Ion Mobility-Mass Spectrometry Reveals Additional Mechanistic Details in the Stabilization of Protein Complex Ions through Tuned Salt Additives.

Authors:  Linjie Han; Brandon T Ruotolo
Journal:  Int J Ion Mobil Spectrom       Date:  2013-01-29
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