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Literature DB >> 22390828

Life at the extreme: lessons from the genome.

Dong-Ha Oh¹, Maheshi Dassanayake, Hans J Bohnert, John M Cheeseman.

Abstract

Extremophile plants thrive in places where most plant species cannot survive. Recent developments in high-throughput technologies and comparative genomics are shedding light on the evolutionary mechanisms leading to their adaptation.

Mesh：

Substances：

Year: 2012 PMID： 22390828 PMCID： PMC3439964 DOI： 10.1186/gb-2012-13-3-241

Source DB: PubMed Journal: Genome Biol ISSN： 1474-7596 Impact factor: 13.583

65 in total

1. Abiotic stress and plant genome evolution. Search for new models.

Authors: Anna Amtmann; Hans J Bohnert; Ray A Bressan
Journal: Plant Physiol Date: 2005-05 Impact factor: 8.340

2. An siRNA pathway prevents transgenerational retrotransposition in plants subjected to stress.

Authors: Hidetaka Ito; Hervé Gaubert; Etienne Bucher; Marie Mirouze; Isabelle Vaillant; Jerzy Paszkowski
Journal: Nature Date: 2011-03-13 Impact factor: 49.962

3. Sodium transport in plants: a critical review.

Authors: Herbert J Kronzucker; Dev T Britto
Journal: New Phytol Date: 2011-01 Impact factor: 10.151

4. Stress-induced DNA methylation changes and their heritability in asexual dandelions.

Authors: Koen J F Verhoeven; Jeroen J Jansen; Peter J van Dijk; Arjen Biere
Journal: New Phytol Date: 2009-12-14 Impact factor: 10.151

5. Primary responses to salt stress in a halophyte, smooth cordgrass (Spartina alterniflora Loisel.).

Authors: Niranjan Baisakh; Prasanta K Subudhi; Pritish Varadwaj
Journal: Funct Integr Genomics Date: 2008-02-28 Impact factor: 3.410

6. A coastal cline in sodium accumulation in Arabidopsis thaliana is driven by natural variation of the sodium transporter AtHKT1;1.

Authors: Ivan Baxter; Jessica N Brazelton; Danni Yu; Yu S Huang; Brett Lahner; Elena Yakubova; Yan Li; Joy Bergelson; Justin O Borevitz; Magnus Nordborg; Olga Vitek; David E Salt
Journal: PLoS Genet Date: 2010-11-11 Impact factor: 5.917

7. Pathway analysis of the transcriptome and metabolome of salt sensitive and tolerant poplar species reveals evolutionary adaption of stress tolerance mechanisms.

Authors: Dennis Janz; Katja Behnke; Jörg-Peter Schnitzler; Basem Kanawati; Philippe Schmitt-Kopplin; Andrea Polle
Journal: BMC Plant Biol Date: 2010-07-17 Impact factor: 4.215

8. The Arabidopsis lyrata genome sequence and the basis of rapid genome size change.

Authors: Tina T Hu; Pedro Pattyn; Erica G Bakker; Jun Cao; Jan-Fang Cheng; Richard M Clark; Noah Fahlgren; Jeffrey A Fawcett; Jane Grimwood; Heidrun Gundlach; Georg Haberer; Jesse D Hollister; Stephan Ossowski; Robert P Ottilar; Asaf A Salamov; Korbinian Schneeberger; Manuel Spannagl; Xi Wang; Liang Yang; Mikhail E Nasrallah; Joy Bergelson; James C Carrington; Brandon S Gaut; Jeremy Schmutz; Klaus F X Mayer; Yves Van de Peer; Igor V Grigoriev; Magnus Nordborg; Detlef Weigel; Ya-Long Guo
Journal: Nat Genet Date: 2011-04-10 Impact factor: 38.330

9. Evolutionary origins of Brassicaceae specific genes in Arabidopsis thaliana.

Authors: Mark Ta Donoghue; Channa Keshavaiah; Sandesh H Swamidatta; Charles Spillane
Journal: BMC Evol Biol Date: 2011-02-18 Impact factor: 3.260

10. Evolution of stress-regulated gene expression in duplicate genes of Arabidopsis thaliana.

Authors: Cheng Zou; Melissa D Lehti-Shiu; Michael Thomashow; Shin-Han Shiu
Journal: PLoS Genet Date: 2009-07-31 Impact factor: 5.917

39 in total

1. Insights into salt tolerance from the genome of Thellungiella salsuginea.

Authors: Hua-Jun Wu; Zhonghui Zhang; Jun-Yi Wang; Dong-Ha Oh; Maheshi Dassanayake; Binghang Liu; Quanfei Huang; Hai-Xi Sun; Ran Xia; Yaorong Wu; Yi-Nan Wang; Zhao Yang; Yang Liu; Wanke Zhang; Huawei Zhang; Jinfang Chu; Cunyu Yan; Shuang Fang; Jinsong Zhang; Yiqin Wang; Fengxia Zhang; Guodong Wang; Sang Yeol Lee; John M Cheeseman; Bicheng Yang; Bo Li; Jiumeng Min; Linfeng Yang; Jun Wang; Chengcai Chu; Shou-Yi Chen; Hans J Bohnert; Jian-Kang Zhu; Xiu-Jie Wang; Qi Xie
Journal: Proc Natl Acad Sci U S A Date: 2012-07-09 Impact factor: 11.205

2. Genome structures and transcriptomes signify niche adaptation for the multiple-ion-tolerant extremophyte Schrenkiella parvula.

Authors: Dong-Ha Oh; Hyewon Hong; Sang Yeol Lee; Dae-Jin Yun; Hans J Bohnert; Maheshi Dassanayake
Journal: Plant Physiol Date: 2014-02-21 Impact factor: 8.340

Review 3. Halophytism: What Have We Learnt From Arabidopsis thaliana Relative Model Systems?

Authors: Yana Kazachkova; Gil Eshel; Pramod Pantha; John M Cheeseman; Maheshi Dassanayake; Simon Barak
Journal: Plant Physiol Date: 2018-09-20 Impact factor: 8.340

4. Introduction to desiccation biology: from old borders to new frontiers.

Authors: Olivier Leprince; Julia Buitink
Journal: Planta Date: 2015-07-04 Impact factor: 4.116

5. Growth platform-dependent and -independent phenotypic and metabolic responses of Arabidopsis and its halophytic relative, Eutrema salsugineum, to salt stress.

Authors: Yana Kazachkova; Albert Batushansky; Aroldo Cisneros; Noemi Tel-Zur; Aaron Fait; Simon Barak
Journal: Plant Physiol Date: 2013-06-04 Impact factor: 8.340

6. Distinct Copy Number, Coding Sequence, and Locus Methylation Patterns Underlie Rhg1-Mediated Soybean Resistance to Soybean Cyst Nematode.

Authors: David E Cook; Adam M Bayless; Kai Wang; Xiaoli Guo; Qijian Song; Jiming Jiang; Andrew F Bent
Journal: Plant Physiol Date: 2014-04-14 Impact factor: 8.340