Literature DB >> 21877225

New genome size estimates of 134 species of arthropods.

Shawn Jason Hanrahan1, J Spencer Johnston.   

Abstract

Insect genome size diversity remains poorly sampled, with sparse and sporadic sampling of a few select orders and with many orders unrepresented or underrepresented in the genome size database. Here, we present 134 genome size estimates for 18 orders, including the first ever genome size estimates for eight orders, 38 families, 102 genera, and 131 species. Also reported here are three insect species genome size estimates that are corrections for unpublished genome size values that made it into the literature, including the smallest arthropod genome of the two spot spider mite (1C = 91 Mb). These estimates range from 91 to 7,752 Mb and provide a broader picture of genome size variation within Insecta and among all Arthropods. Proposed developmental constraints for holometabolous insect genome sizes are supported, with the majority of the species examined falling well under the hypothesized 1,978 Mb (2 pg) limit. The only exceptions occur in the highly diverse beetles (Coleoptera) (154 < 1C < 2,578) and the Mecoptera (1,890 < 1C < 2,134). Hemimetabolous orders include species with larger genomes. Of these, the Orthopteran genomes remain the largest (675 < 1C < 7,752). Hemipteran genomes are smaller (407 < 1C < 1,230), but with a very notable exception, the Cicadidae family, with bloated genomes (5,238 < 1C < 7,000 Mb) of a size previously known to exist only within Orthoptera. The genome sizes in all other Hemimetabolous orders (521 Mb < 1C < 3,860 Mb) fall within the range exhibited by the Hemiptera. New preparations and procedures for insect genome estimates with frozen material are described and discussed. To further improve and extend the number and quality of arthropod genome size estimates, a new flow cytometry insect standard, Blattaria: Periplaneta americana♂ (1C = 3,338 Mb) is established for genome size determination of insect genomes in excess of 2,000 Mb.

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Year:  2011        PMID: 21877225     DOI: 10.1007/s10577-011-9231-6

Source DB:  PubMed          Journal:  Chromosome Res        ISSN: 0967-3849            Impact factor:   5.239


  13 in total

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Authors:  T R Gregory
Journal:  Biol Rev Camb Philos Soc       Date:  2001-02

Review 2.  Genome size and developmental complexity.

Authors:  T Ryan Gregory
Journal:  Genetica       Date:  2002-05       Impact factor: 1.082

3.  Genome size diversity in the family Drosophilidae.

Authors:  T R Gregory; J S Johnston
Journal:  Heredity (Edinb)       Date:  2008-06-04       Impact factor: 3.821

4.  Extremely small genomes in two unrelated dipteran insects with shared early developmental traits.

Authors:  Urs Schmidt-Ott; Ab Matteen Rafiqi; Klaus Sander; J Spencer Johnston
Journal:  Dev Genes Evol       Date:  2009-03-24       Impact factor: 0.900

5.  Tiny genomes and endoreduplication in Strepsiptera.

Authors:  J S Johnston; L D Ross; L Beani; D P Hughes; J Kathirithamby
Journal:  Insect Mol Biol       Date:  2004-12       Impact factor: 3.585

Review 6.  Developing transgenic Anopheles mosquitoes for the sterile insect technique.

Authors:  Tony Nolan; Philippos Papathanos; Nikolai Windbichler; Kalle Magnusson; Jason Benton; Flaminia Catteruccia; Andrea Crisanti
Journal:  Genetica       Date:  2010-09-07       Impact factor: 1.082

7.  Body lice and head lice (Anoplura: Pediculidae) have the smallest genomes of any hemimetabolous insect reported to date.

Authors:  J Spencer Johnston; Kyong Sup Yoon; Joseph P Strycharz; Barry R Pittendrigh; J Marshall Clark
Journal:  J Med Entomol       Date:  2007-11       Impact factor: 2.278

8.  DNA sequence organization in the Thysanura Thermobia domestica.

Authors:  C K French; J E Manning
Journal:  J Mol Evol       Date:  1980-08       Impact factor: 2.395

9.  Genome Size and Species Diversification.

Authors:  Ken Kraaijeveld
Journal:  Evol Biol       Date:  2010-09-17       Impact factor: 3.119

10.  Single-copy nuclear genes resolve the phylogeny of the holometabolous insects.

Authors:  Brian M Wiegmann; Michelle D Trautwein; Jung-Wook Kim; Brian K Cassel; Matthew A Bertone; Shaun L Winterton; David K Yeates
Journal:  BMC Biol       Date:  2009-06-24       Impact factor: 7.431

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  40 in total

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Authors:  Kojun Kanda; James M Pflug; John S Sproul; Mark A Dasenko; David R Maddison
Journal:  PLoS One       Date:  2015-12-30       Impact factor: 3.240

2.  Multifaceted biological insights from a draft genome sequence of the tobacco hornworm moth, Manduca sexta.

Authors:  Michael R Kanost; Estela L Arrese; Xiaolong Cao; Yun-Ru Chen; Sanjay Chellapilla; Marian R Goldsmith; Ewald Grosse-Wilde; David G Heckel; Nicolae Herndon; Haobo Jiang; Alexie Papanicolaou; Jiaxin Qu; Jose L Soulages; Heiko Vogel; James Walters; Robert M Waterhouse; Seung-Joon Ahn; Francisca C Almeida; Chunju An; Peshtewani Aqrawi; Anne Bretschneider; William B Bryant; Sascha Bucks; Hsu Chao; Germain Chevignon; Jayne M Christen; David F Clarke; Neal T Dittmer; Laura C F Ferguson; Spyridoula Garavelou; Karl H J Gordon; Ramesh T Gunaratna; Yi Han; Frank Hauser; Yan He; Hanna Heidel-Fischer; Ariana Hirsh; Yingxia Hu; Hongbo Jiang; Divya Kalra; Christian Klinner; Christopher König; Christie Kovar; Ashley R Kroll; Suyog S Kuwar; Sandy L Lee; Rüdiger Lehman; Kai Li; Zhaofei Li; Hanquan Liang; Shanna Lovelace; Zhiqiang Lu; Jennifer H Mansfield; Kyle J McCulloch; Tittu Mathew; Brian Morton; Donna M Muzny; David Neunemann; Fiona Ongeri; Yannick Pauchet; Ling-Ling Pu; Ioannis Pyrousis; Xiang-Jun Rao; Amanda Redding; Charles Roesel; Alejandro Sanchez-Gracia; Sarah Schaack; Aditi Shukla; Guillaume Tetreau; Yang Wang; Guang-Hua Xiong; Walther Traut; Tom K Walsh; Kim C Worley; Di Wu; Wenbi Wu; Yuan-Qing Wu; Xiufeng Zhang; Zhen Zou; Hannah Zucker; Adriana D Briscoe; Thorsten Burmester; Rollie J Clem; René Feyereisen; Cornelis J P Grimmelikhuijzen; Stavros J Hamodrakas; Bill S Hansson; Elisabeth Huguet; Lars S Jermiin; Que Lan; Herman K Lehman; Marce Lorenzen; Hans Merzendorfer; Ioannis Michalopoulos; David B Morton; Subbaratnam Muthukrishnan; John G Oakeshott; Will Palmer; Yoonseong Park; A Lorena Passarelli; Julio Rozas; Lawrence M Schwartz; Wendy Smith; Agnes Southgate; Andreas Vilcinskas; Richard Vogt; Ping Wang; John Werren; Xiao-Qiang Yu; Jing-Jiang Zhou; Susan J Brown; Steven E Scherer; Stephen Richards; Gary W Blissard
Journal:  Insect Biochem Mol Biol       Date:  2016-08-12       Impact factor: 4.714

3.  Quantitative PCR-based genome size estimation of the astigmatid mites Sarcoptes scabiei, Psoroptes ovis and Dermatophagoides pteronyssinus.

Authors:  Kate E Mounsey; Charlene Willis; Stewart T G Burgess; Deborah C Holt; James McCarthy; Katja Fischer
Journal:  Parasit Vectors       Date:  2012-01-04       Impact factor: 3.876

4.  De novo Assembly and Characterization of the Testis Transcriptome and Development of EST-SSR Markers in the Cockroach Periplaneta americana.

Authors:  Wan Chen; Yu-Xiang Liu; Guo-Fang Jiang
Journal:  Sci Rep       Date:  2015-06-05       Impact factor: 4.379

5.  What's in the Gift? Towards a Molecular Dissection of Nuptial Feeding in a Cricket.

Authors:  Yannick Pauchet; Natalie Wielsch; Paul A Wilkinson; Scott K Sakaluk; Aleš Svatoš; Richard H ffrench-Constant; John Hunt; David G Heckel
Journal:  PLoS One       Date:  2015-10-06       Impact factor: 3.240

6.  Comparative analyses of transcriptional responses of Dectes texanus LeConte (Coleoptera: Cerambycidae) larvae fed on three different host plants and artificial diet.

Authors:  Lina M Aguirre-Rojas; Erin D Scully; Harold N Trick; Kun Yan Zhu; C Michael Smith
Journal:  Sci Rep       Date:  2021-06-01       Impact factor: 4.379

7.  Insights into the genomic evolution of insects from cricket genomes.

Authors:  Guillem Ylla; Taro Nakamura; Takehiko Itoh; Rei Kajitani; Atsushi Toyoda; Sayuri Tomonari; Tetsuya Bando; Yoshiyasu Ishimaru; Takahito Watanabe; Masao Fuketa; Yuji Matsuoka; Austen A Barnett; Sumihare Noji; Taro Mito; Cassandra G Extavour
Journal:  Commun Biol       Date:  2021-06-14

8.  Developmental gene discovery in a hemimetabolous insect: de novo assembly and annotation of a transcriptome for the cricket Gryllus bimaculatus.

Authors:  Victor Zeng; Ben Ewen-Campen; Hadley W Horch; Siegfried Roth; Taro Mito; Cassandra G Extavour
Journal:  PLoS One       Date:  2013-05-06       Impact factor: 3.240

9.  Estimation of the genome sizes of the chigger mites Leptotrombidium pallidum and Leptotrombidium scutellare based on quantitative PCR and k-mer analysis.

Authors:  Ju Hyeon Kim; Jong Yul Roh; Deok Ho Kwon; Young Ho Kim; Kyungjae A Yoon; Seungil Yoo; Seung-Jae Noh; Junhyung Park; E-Hyun Shin; Mi-Yeoun Park; Si Hyeock Lee
Journal:  Parasit Vectors       Date:  2014-06-20       Impact factor: 3.876

10.  Genome Assembly of the Cold-Tolerant Leaf Beetle Gonioctena quinquepunctata, an Important Resource for Studying Its Evolution and Reproductive Barriers between Species.

Authors:  Svitlana Lukicheva; Jean-François Flot; Patrick Mardulyn
Journal:  Genome Biol Evol       Date:  2021-07-06       Impact factor: 3.416

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