Literature DB >> 21875159

OnionTree XML: a format to exchange gene-related probabilities.

Alexander Favorov1, Dmitrijs Lvovs, William Speier, Giovanni Parmigiani, Michael F Ochs.   

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Year:  2011        PMID: 21875159      PMCID: PMC4856015          DOI: 10.1080/073911011010524994

Source DB:  PubMed          Journal:  J Biomol Struct Dyn        ISSN: 0739-1102


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  28 in total

1.  XEMBL: distributing EMBL data in XML format.

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Journal:  Bioinformatics       Date:  2002-08       Impact factor: 6.937

2.  CisML: an XML-based format for sequence motif detection software.

Authors:  Peter M Haverty; Zhiping Weng
Journal:  Bioinformatics       Date:  2004-03-04       Impact factor: 6.937

3.  Painting a perspective on the landscape of nucleosome positioning.

Authors:  Steven M Johnson
Journal:  J Biomol Struct Dyn       Date:  2010-06

4.  Genome-wide identification and evolutionary analysis of Arabidopsis sm genes family.

Authors:  Jun Cao; Feng Shi; Xiaoguang Liu; Jinli Jia; Jun Zeng; Guang Huang
Journal:  J Biomol Struct Dyn       Date:  2011-02

5.  MFAML: a standard data structure for representing and exchanging metabolic flux models.

Authors:  Hongseok Yun; Dong-Yup Lee; Joonwoo Jeong; Seunghyun Lee; Sang Yup Lee
Journal:  Bioinformatics       Date:  2005-05-19       Impact factor: 6.937

Review 6.  Microarray data analysis: from disarray to consolidation and consensus.

Authors:  David B Allison; Xiangqin Cui; Grier P Page; Mahyar Sabripour
Journal:  Nat Rev Genet       Date:  2006-01       Impact factor: 53.242

7.  Human non-synonymous SNPs: server and survey.

Authors:  Vasily Ramensky; Peer Bork; Shamil Sunyaev
Journal:  Nucleic Acids Res       Date:  2002-09-01       Impact factor: 16.971

8.  Knowledge-based data analysis comes of age.

Authors:  Michael F Ochs
Journal:  Brief Bioinform       Date:  2009-10-23       Impact factor: 11.622

9.  Design and implementation of microarray gene expression markup language (MAGE-ML).

Authors:  Paul T Spellman; Michael Miller; Jason Stewart; Charles Troup; Ugis Sarkans; Steve Chervitz; Derek Bernhart; Gavin Sherlock; Catherine Ball; Marc Lepage; Marcin Swiatek; W L Marks; Jason Goncalves; Scott Markel; Daniel Iordan; Mohammadreza Shojatalab; Angel Pizarro; Joe White; Robert Hubley; Eric Deutsch; Martin Senger; Bruce J Aronow; Alan Robinson; Doug Bassett; Christian J Stoeckert; Alvis Brazma
Journal:  Genome Biol       Date:  2002-08-23       Impact factor: 13.583

10.  Seeded Bayesian Networks: constructing genetic networks from microarray data.

Authors:  Amira Djebbari; John Quackenbush
Journal:  BMC Syst Biol       Date:  2008-07-04
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