Literature DB >> 20232934

Painting a perspective on the landscape of nucleosome positioning.

Steven M Johnson1.   

Abstract

DNA sequence influences the position of nucleosomes and chromatin architecture. The extent to which underlying DNA sequence affects nucleosome positioning is currently a topic of considerable discussion and active experimentation. To contribute to the discussion, I will outline a few of the methods, data and arguments that I find compelling and believe will ultimately resolve the question of what positions nucleosomes. Basically, I will give a portrait of my current perspective on what influences the landscape of nucleosome positioning and chromatin architecture.

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Year:  2010        PMID: 20232934     DOI: 10.1080/073911010010524946

Source DB:  PubMed          Journal:  J Biomol Struct Dyn        ISSN: 0739-1102


  3 in total

1.  OnionTree XML: a format to exchange gene-related probabilities.

Authors:  Alexander Favorov; Dmitrijs Lvovs; William Speier; Giovanni Parmigiani; Michael F Ochs
Journal:  J Biomol Struct Dyn       Date:  2011-10

2.  Global remodeling of nucleosome positions in C. elegans.

Authors:  George Locke; Devorah Haberman; Steven M Johnson; Alexandre V Morozov
Journal:  BMC Genomics       Date:  2013-04-26       Impact factor: 3.969

3.  Reproducibility and consistency of in vitro nucleosome reconstitutions demonstrated by invitrosome isolation and sequencing.

Authors:  Colton E Kempton; Justin R Heninger; Steven M Johnson
Journal:  PLoS One       Date:  2014-08-05       Impact factor: 3.240

  3 in total

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