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Literature DB >> 21874075

Species Numbers in Bacteria.

Abstract

A modified biological species definition (BSD), i.e., that bacteria exchange genes within a species, but not usually between species, is shown to apply to bacteria. The formal definition of bacterial species, which is more conservative than the modified BSD, is framed in terms of DNA hybridization. From this I estimate there are a million species of bacteria in 30 grams of rich forest topsoil and propose that there will be at least a billion species worldwide.

Year: 2005 PMID： 21874075 PMCID： PMC3160642

Source DB: PubMed Journal: Proc Calif Acad Sci ISSN： 0068-547X

29 in total

Review 1. Lateral gene transfer and the nature of bacterial innovation.

Authors: H Ochman; J G Lawrence; E A Groisman
Journal: Nature Date: 2000-05-18 Impact factor: 49.962

Review 2. What are bacterial species?

Authors: Frederick M Cohan
Journal: Annu Rev Microbiol Date: 2002-01-30 Impact factor: 15.500

3. Ecological separation and genetic isolation of Neisseria gonorrhoeae and Neisseria meningitidis.

Authors: J A Vázquez; L de la Fuente; S Berron; M O'Rourke; N H Smith; J Zhou; B G Spratt
Journal: Curr Biol Date: 1993-09-01 Impact factor: 10.834

4. Molecular and evolutionary relationships among enteric bacteria.

Authors: J G Lawrence; H Ochman; D L Hartl
Journal: J Gen Microbiol Date: 1991-08

Review 5. Evolution in bacterial plasmids and levels of selection.

Authors: W G Eberhard
Journal: Q Rev Biol Date: 1990-03 Impact factor: 4.875

6. Broad-Scale Approaches to the Determination of Soil Microbial Community Structure: Application of the Community DNA Hybridization Technique

Authors:
Journal: Microb Ecol Date: 1996-05 Impact factor: 4.552

7. How clonal are bacteria?

Authors: J M Smith; N H Smith; M O'Rourke; B G Spratt
Journal: Proc Natl Acad Sci U S A Date: 1993-05-15 Impact factor: 11.205

8. Recombination in Escherichia coli and the definition of biological species.

Authors: D E Dykhuizen; L Green
Journal: J Bacteriol Date: 1991-11 Impact factor: 3.490

Review 9. Determinants of DNA sequence divergence between Escherichia coli and Salmonella typhimurium: codon usage, map position, and concerted evolution.

Authors: P M Sharp
Journal: J Mol Evol Date: 1991-07 Impact factor: 2.395

10. Further evidence for the non-clonal population structure of Neisseria gonorrhoeae: extensive genetic diversity within isolates of the same electrophoretic type.

Authors: M O'Rourke; B G Spratt
Journal: Microbiology Date: 1994-06 Impact factor: 2.777

11 in total

1. Synthesis of phylogeny and taxonomy into a comprehensive tree of life.

Authors: Cody E Hinchliff; Stephen A Smith; James F Allman; J Gordon Burleigh; Ruchi Chaudhary; Lyndon M Coghill; Keith A Crandall; Jiabin Deng; Bryan T Drew; Romina Gazis; Karl Gude; David S Hibbett; Laura A Katz; H Dail Laughinghouse; Emily Jane McTavish; Peter E Midford; Christopher L Owen; Richard H Ree; Jonathan A Rees; Douglas E Soltis; Tiffani Williams; Karen A Cranston
Journal: Proc Natl Acad Sci U S A Date: 2015-09-18 Impact factor: 11.205

2. Understanding the enormous diversity of bacteriophages: the tailed phages that infect the bacterial family Enterobacteriaceae.

Authors: Julianne H Grose; Sherwood R Casjens
Journal: Virology Date: 2014-11 Impact factor: 3.616

3. Exploiting phage strategies to modulate bacterial transcription.

Authors: Markus C Wahl; Ranjan Sen
Journal: Transcription Date: 2019-10-30

Review 4. Forest and Trees: Exploring Bacterial Virulence with Genome-wide Association Studies and Machine Learning.

Authors: Jonathan P Allen; Evan Snitkin; Nathan B Pincus; Alan R Hauser
Journal: Trends Microbiol Date: 2021-01-14 Impact factor: 18.230

5. A census-based estimate of Earth's bacterial and archaeal diversity.

Authors: Stilianos Louca; Florent Mazel; Michael Doebeli; Laura Wegener Parfrey
Journal: PLoS Biol Date: 2019-02-04 Impact factor: 8.029

6. Systematic evasion of the restriction-modification barrier in bacteria.

Authors: Christopher D Johnston; Sean L Cotton; Susan R Rittling; Jacqueline R Starr; Gary G Borisy; Floyd E Dewhirst; Katherine P Lemon
Journal: Proc Natl Acad Sci U S A Date: 2019-05-16 Impact factor: 11.205

7. Human gastrointestinal (GI) tract microbiome-derived pro-inflammatory neurotoxins from Bacteroides fragilis: Effects of low fiber diets and environmental and lifestyle factors.

Authors: Walter J Lukiw
Journal: Integr Food Nutr Metab Date: 2020-03-09