Literature DB >> 21873478

Shotgun isotope array for rapid, substrate-specific detection of microorganisms in a microbial community.

Tomohiro Tobino1, Futoshi Kurisu, Ikuro Kasuga, Hiroaki Furumai.   

Abstract

The shotgun isotope array method has been proposed to be an effective new tool for use in substrate-specific microbe exploration without any prior knowledge of the community composition. Proof of concept was demonstrated by detection of acetate-degrading microorganisms in activated sludge and further verified by independent stable isotope probing (SIP).

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Year:  2011        PMID： 21873478      PMCID： PMC3194861          DOI： 10.1128/AEM.00121-11

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  14 in total

1.  Stable-isotope probing as a tool in microbial ecology.

Authors:  S Radajewski; P Ineson; N R Parekh; J C Murrell
Journal:  Nature       Date:  2000-02-10       Impact factor: 49.962

2.  Development and evaluation of functional gene arrays for detection of selected genes in the environment.

Authors:  L Wu; D K Thompson; G Li; R A Hurt; J M Tiedje; J Zhou
Journal:  Appl Environ Microbiol       Date:  2001-12       Impact factor: 4.792

3.  Metagenomic profiling: microarray analysis of an environmental genomic library.

Authors:  Jonathan L Sebat; Frederick S Colwell; Ronald L Crawford
Journal:  Appl Environ Microbiol       Date:  2003-08       Impact factor: 4.792

Review 4.  Stable isotope probing - linking microbial identity to function.

Authors:  Marc G Dumont; J Colin Murrell
Journal:  Nat Rev Microbiol       Date:  2005-06       Impact factor: 60.633

Review 5.  Linking microbial community structure with function: fluorescence in situ hybridization-microautoradiography and isotope arrays.

Authors:  Michael Wagner; Per H Nielsen; Alexander Loy; Jeppe L Nielsen; Holger Daims
Journal:  Curr Opin Biotechnol       Date:  2005-12-27       Impact factor: 9.740

Review 6.  Stable-isotope probing of DNA: insights into the function of uncultivated microorganisms from isotopically labeled metagenomes.

Authors:  Michael W Friedrich
Journal:  Curr Opin Biotechnol       Date:  2006-01-11       Impact factor: 9.740

7.  Isotope array analysis of Rhodocyclales uncovers functional redundancy and versatility in an activated sludge.

Authors:  Martin Hesselsoe; Stephanie Füreder; Michael Schloter; Levente Bodrossy; Niels Iversen; Peter Roslev; Per Halkjaer Nielsen; Michael Wagner; Alexander Loy
Journal:  ISME J       Date:  2009-07-02       Impact factor: 10.302

8.  RNA stable isotope probing, a novel means of linking microbial community function to phylogeny.

Authors:  Mike Manefield; Andrew S Whiteley; Robert I Griffiths; Mark J Bailey
Journal:  Appl Environ Microbiol       Date:  2002-11       Impact factor: 4.792

9.  Combination of fluorescent in situ hybridization and microautoradiography-a new tool for structure-function analyses in microbial ecology.

Authors:  N Lee; P H Nielsen; K H Andreasen; S Juretschko; J L Nielsen; K H Schleifer; M Wagner
Journal:  Appl Environ Microbiol       Date:  1999-03       Impact factor: 4.792

10.  The isotope array, a new tool that employs substrate-mediated labeling of rRNA for determination of microbial community structure and function.

Authors:  Justyna Adamczyk; Martin Hesselsoe; Niels Iversen; Matthias Horn; Angelika Lehner; Per Halkjaer Nielsen; Michael Schloter; Peter Roslev; Michael Wagner
Journal:  Appl Environ Microbiol       Date:  2003-11       Impact factor: 4.792
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  3 in total

Review 1.  Carl woese: from biophysics to evolutionary microbiology.

Authors:  Om Prakash; Kamlesh Jangid; Yogesh S Shouche
Journal:  Indian J Microbiol       Date:  2013-04-05       Impact factor: 2.461

Review 2.  Stable isotope probing in the metagenomics era: a bridge towards improved bioremediation.

Authors:  Ondrej Uhlik; Mary-Cathrine Leewis; Michal Strejcek; Lucie Musilova; Martina Mackova; Mary Beth Leigh; Tomas Macek
Journal:  Biotechnol Adv       Date:  2012-09-26       Impact factor: 14.227

3.  Members of the uncultured bacterial candidate division WWE1 are implicated in anaerobic digestion of cellulose.

Authors:  Rim Driss Limam; Rakia Chouari; Laurent Mazéas; Ting-Di Wu; Tianlun Li; Julien Grossin-Debattista; Jean-Luc Guerquin-Kern; Mouldi Saidi; Ahmed Landoulsi; Abdelghani Sghir; Théodore Bouchez
Journal:  Microbiologyopen       Date:  2014-02-05       Impact factor: 3.139
  3 in total

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