Literature DB >> 2187197

Escherichia coli thymidylate synthase: amino acid substitutions by suppression of amber nonsense mutations.

M L Michaels1, C W Kim, D A Matthews, J H Miller.   

Abstract

By using site-directed oligonucleotide mutagenesis, amber nonsense stop codons (5'-TAG-3') have been introduced at 20 sites in the Escherichia coli thymidylate synthase gene. By transforming the thyA mutant plasmids into 13 strains, each of which harbor different amber suppressor tRNAs, we were able to generate over 245 amino acid substitutions in E. coli thymidylate synthase (EC 2.1.1.45). Growth characteristics of these mutants have been studied, yielding a body of information that includes some surprising results in light of the recently published crystal structure of the enzyme.

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Year:  1990        PMID: 2187197      PMCID: PMC54023          DOI: 10.1073/pnas.87.10.3957

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  25 in total

1.  Construction and characterization of amplifiable multicopy DNA cloning vehicles derived from the P15A cryptic miniplasmid.

Authors:  A C Chang; S N Cohen
Journal:  J Bacteriol       Date:  1978-06       Impact factor: 3.490

Review 2.  Thymidylate synthetase - a target enzyme in cancer chemotherapy.

Authors:  P V Danenberg
Journal:  Biochim Biophys Acta       Date:  1977-12-23

3.  Genetic studies of the lac repressor. IX. Generation of altered proteins by the suppression of nonsence mutations.

Authors:  J H Miller; C Coulondre; M Hofer; U Schmeissner; H Sommer; A Schmitz; P Lu
Journal:  J Mol Biol       Date:  1979-06-25       Impact factor: 5.469

4.  Context effects: translation of UAG codon by suppressor tRNA is affected by the sequence following UAG in the message.

Authors:  L Bossi
Journal:  J Mol Biol       Date:  1983-02-15       Impact factor: 5.469

5.  Effects of surrounding sequence on the suppression of nonsense codons.

Authors:  J H Miller; A M Albertini
Journal:  J Mol Biol       Date:  1983-02-15       Impact factor: 5.469

6.  TRNA2Gln Su+2 mutants that increase amber suppression.

Authors:  D Bradley; J V Park; L Soll
Journal:  J Bacteriol       Date:  1981-02       Impact factor: 3.490

7.  An isotopic assay for thymidylate synthetase.

Authors:  D Roberts
Journal:  Biochemistry       Date:  1966-11       Impact factor: 3.162

8.  DNA sequencing with chain-terminating inhibitors.

Authors:  F Sanger; S Nicklen; A R Coulson
Journal:  Proc Natl Acad Sci U S A       Date:  1977-12       Impact factor: 11.205

9.  Crystal structure of Escherichia coli thymidylate synthase with FdUMP and 10-propargyl-5,8-dideazafolate.

Authors:  D A Matthews; K Appelt; S J Oatley
Journal:  Adv Enzyme Regul       Date:  1989

10.  Primary structure of the Escherichia coli thyA gene and its thymidylate synthase product.

Authors:  M Belfort; G Maley; J Pedersen-Lane; F Maley
Journal:  Proc Natl Acad Sci U S A       Date:  1983-08       Impact factor: 11.205

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  13 in total

1.  Genetic determinants involved in p-aminosalicylic acid resistance in clinical isolates from tuberculosis patients in northern China from 2006 to 2012.

Authors:  Xiaobing Zhang; Liguo Liu; Yan Zhang; Guangming Dai; Hairong Huang; Qi Jin
Journal:  Antimicrob Agents Chemother       Date:  2014-11-24       Impact factor: 5.191

2.  Hotspots in an obligate homodimeric anticancer target. Structural and functional effects of interfacial mutations in human thymidylate synthase.

Authors:  Outi M H Salo-Ahen; Anna Tochowicz; Cecilia Pozzi; Daniela Cardinale; Stefania Ferrari; Yap Boum; Stefano Mangani; Robert M Stroud; Puneet Saxena; Hannu Myllykallio; Maria Paola Costi; Glauco Ponterini; Rebecca C Wade
Journal:  J Med Chem       Date:  2015-04-01       Impact factor: 7.446

3.  Asn177 in Escherichia coli thymidylate synthase is a major determinant of pyrimidine specificity.

Authors:  L W Hardy; E Nalivaika
Journal:  Proc Natl Acad Sci U S A       Date:  1992-10-15       Impact factor: 11.205

Review 4.  Functions of the gene products of Escherichia coli.

Authors:  M Riley
Journal:  Microbiol Rev       Date:  1993-12

5.  Substitutions of a cysteine conserved among DNA cytosine methylases result in a variety of phenotypes.

Authors:  M W Wyszynski; S Gabbara; A S Bhagwat
Journal:  Nucleic Acids Res       Date:  1992-01-25       Impact factor: 16.971

6.  Expression, purification, and characterization of thymidylate synthase from Lactococcus lactis.

Authors:  P J Greene; P L Yu; J Zhao; C A Schiffer; D Santi
Journal:  Protein Sci       Date:  1994-07       Impact factor: 6.725

7.  Quality control despite mistranslation caused by an ambiguous genetic code.

Authors:  Benfang Ruan; Sotiria Palioura; Jeffrey Sabina; Laure Marvin-Guy; Sunil Kochhar; Robert A Larossa; Dieter Söll
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-22       Impact factor: 11.205

8.  Asparagine 229 in thymidylate synthase contributes to, but is not essential for, catalysis.

Authors:  L Liu; D V Santi
Journal:  Proc Natl Acad Sci U S A       Date:  1993-09-15       Impact factor: 11.205

9.  Functional analysis of the Mycobacterium tuberculosis FAD-dependent thymidylate synthase, ThyX, reveals new amino acid residues contributing to an extended ThyX motif.

Authors:  Jonathan E Ulmer; Yap Boum; Christopher D Thouvenel; Hannu Myllykallio; Carol Hopkins Sibley
Journal:  J Bacteriol       Date:  2008-01-11       Impact factor: 3.490

10.  Reassigning cysteine in the genetic code of Escherichia coli.

Authors:  V Döring; P Marlière
Journal:  Genetics       Date:  1998-10       Impact factor: 4.562

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