Literature DB >> 10592257

Object-oriented transcription factors database (ooTFD).

D Ghosh1.   

Abstract

ooTFD (object-oriented Transcription Factors Database) is an object-oriented successor to TFD. This database is aimed at capturing information regarding the polypeptide interactions which comprise and define the properties of transcription factors. ooTFD contains information about transcription factor binding sites, as well as composite relationships within transcription factors, which frequently occur as multisubunit proteins that form a complex interface to cellular processes outside the transcription machinery through protein-protein interactions. In the past year, a few additions and changes were made to this database and associated tools, which are accessible through the IFTI-MIRAGE web site at http://www.ifti.org/

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Year:  2000        PMID: 10592257      PMCID: PMC102451          DOI: 10.1093/nar/28.1.308

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  7 in total

Review 1.  Regulatory elements and expression profiles.

Authors:  P Bucher
Journal:  Curr Opin Struct Biol       Date:  1999-06       Impact factor: 6.809

Review 2.  The regulation of transcription by phosphorylation.

Authors:  T Hunter; M Karin
Journal:  Cell       Date:  1992-08-07       Impact factor: 41.582

Review 3.  New developments of a transcription factors database.

Authors:  D Ghosh
Journal:  Trends Biochem Sci       Date:  1991-11       Impact factor: 13.807

Review 4.  A relational database of transcription factors.

Authors:  D Ghosh
Journal:  Nucleic Acids Res       Date:  1990-04-11       Impact factor: 16.971

Review 5.  The protein kinase resource.

Authors:  C M Smith; I N Shindyalov; S Veretnik; M Gribskov; S S Taylor; L F Ten Eyck; P E Bourne
Journal:  Trends Biochem Sci       Date:  1997-11       Impact factor: 13.807

6.  OOTFD (Object-Oriented Transcription Factors Database): an object-oriented successor to TFD.

Authors:  D Ghosh
Journal:  Nucleic Acids Res       Date:  1998-01-01       Impact factor: 16.971

Review 7.  Signal transduction from the cell surface to the nucleus through the phosphorylation of transcription factors.

Authors:  M Karin
Journal:  Curr Opin Cell Biol       Date:  1994-06       Impact factor: 8.382

  7 in total
  39 in total

1.  The Eukaryotic Promoter Database, EPD: new entry types and links to gene expression data.

Authors:  Viviane Praz; Rouaïda Périer; Claude Bonnard; Philipp Bucher
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

2.  PlantProm: a database of plant promoter sequences.

Authors:  Ilham A Shahmuradov; Alex J Gammerman; John M Hancock; Peter M Bramley; Victor V Solovyev
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

Review 3.  Computational approaches to identify promoters and cis-regulatory elements in plant genomes.

Authors:  Stephane Rombauts; Kobe Florquin; Magali Lescot; Kathleen Marchal; Pierre Rouzé; Yves van de Peer
Journal:  Plant Physiol       Date:  2003-07       Impact factor: 8.340

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Authors:  Tyler E Siekmann; Madelyn M Gerber; Amanda Ewart Toland
Journal:  Mamm Genome       Date:  2015-12-31       Impact factor: 2.957

Review 5.  Synthetic Promoters: Designing the cis Regulatory Modules for Controlled Gene Expression.

Authors:  Jameel Aysha; Muhammad Noman; Fawei Wang; Weican Liu; Yonggang Zhou; Haiyan Li; Xiaowei Li
Journal:  Mol Biotechnol       Date:  2018-08       Impact factor: 2.695

6.  Anti-Psoriatic Drug Monomethylfumarate Increases Nuclear Factor Erythroid 2-Related Factor 2 Levels and Induces Aquaporin-3 mRNA and Protein Expression.

Authors:  Inas Helwa; Vivek Choudhary; Xunsheng Chen; Ismail Kaddour-Djebbar; Wendy B Bollag
Journal:  J Pharmacol Exp Ther       Date:  2017-05-17       Impact factor: 4.030

7.  A common functional regulatory variant at a type 2 diabetes locus upregulates ARAP1 expression in the pancreatic beta cell.

Authors:  Jennifer R Kulzer; Michael L Stitzel; Mario A Morken; Jeroen R Huyghe; Christian Fuchsberger; Johanna Kuusisto; Markku Laakso; Michael Boehnke; Francis S Collins; Karen L Mohlke
Journal:  Am J Hum Genet       Date:  2014-01-16       Impact factor: 11.025

8.  Involvement of epigenetic mechanisms in the regulation of secreted phospholipase A2 expressions in Jurkat leukemia cells.

Authors:  Mario Menschikowski; Albert Hagelgans; Heike Kostka; Graeme Eisenhofer; Gabriele Siegert
Journal:  Neoplasia       Date:  2008-11       Impact factor: 5.715

9.  CRH haplotype as a factor influencing cerebrospinal fluid levels of corticotropin-releasing hormone, hypothalamic-pituitary-adrenal axis activity, temperament, and alcohol consumption in rhesus macaques.

Authors:  Christina S Barr; Rachel L Dvoskin; Qiaoping Yuan; Robert H Lipsky; Manisha Gupte; Xian Hu; Zhifeng Zhou; Melanie L Schwandt; Stephen G Lindell; Megan McKee; Michelle L Becker; Mitchel A Kling; Phillip W Gold; Dee Higley; Markus Heilig; Stephen J Suomi; David Goldman
Journal:  Arch Gen Psychiatry       Date:  2008-08

10.  Characterization of the histone H2A.Z-1 and H2A.Z-2 isoforms in vertebrates.

Authors:  Deanna Dryhurst; Toyotaka Ishibashi; Kristie L Rose; José M Eirín-López; Darin McDonald; Begonia Silva-Moreno; Nik Veldhoen; Caren C Helbing; Michael J Hendzel; Jeffrey Shabanowitz; Donald F Hunt; Juan Ausió
Journal:  BMC Biol       Date:  2009-12-14       Impact factor: 7.431

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