Literature DB >> 21862382

Snf2-family proteins: chromatin remodellers for any occasion.

Daniel P Ryan1, Tom Owen-Hughes.   

Abstract

Chromatin facilitates the housing of eukaryotic DNA within the nucleus and restricts access to the underlying sequences. Thus, the regulation of chromatin structure provides an excellent platform for regulating processes that require information stored within genomic DNA. Snf2 proteins are a family of helicase-like proteins that direct energy derived from ATP hydrolysis into the mechanical remodelling of chromatin structure. Here, we highlight some of the recent discoveries regarding this family of proteins and show Snf2 proteins have roles in many aspects of genetic metabolism. Recent developments include new insights into the mechanism for nucleosome spacing and histone dimer exchange; together with growing evidence for the involvement of Snf2 proteins in DNA repair.
Copyright © 2011. Published by Elsevier Ltd.

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Year:  2011        PMID: 21862382      PMCID: PMC4162295          DOI: 10.1016/j.cbpa.2011.07.022

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  56 in total

1.  The ATRX syndrome protein forms a chromatin-remodeling complex with Daxx and localizes in promyelocytic leukemia nuclear bodies.

Authors:  Yutong Xue; Richard Gibbons; Zhijiang Yan; Dafeng Yang; Tarra L McDowell; Salvatore Sechi; Jun Qin; Sharleen Zhou; Doug Higgs; Weidong Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2003-09-02       Impact factor: 11.205

2.  Crystal structure and functional analysis of a nucleosome recognition module of the remodeling factor ISWI.

Authors:  Tim Grüne; Jan Brzeski; Anton Eberharter; Cedric R Clapier; Davide F V Corona; Peter B Becker; Christoph W Müller
Journal:  Mol Cell       Date:  2003-08       Impact factor: 17.970

3.  An essential Saccharomyces cerevisiae gene homologous to SNF2 encodes a helicase-related protein in a new family.

Authors:  B C Laurent; X Yang; M Carlson
Journal:  Mol Cell Biol       Date:  1992-04       Impact factor: 4.272

4.  The ACF1 complex is required for DNA double-strand break repair in human cells.

Authors:  Li Lan; Ayako Ui; Satoshi Nakajima; Kotomi Hatakeyama; Mikiko Hoshi; Reiko Watanabe; Susan M Janicki; Hideaki Ogiwara; Takashi Kohno; Shin-Ichiro Kanno; Akira Yasui
Journal:  Mol Cell       Date:  2010-12-22       Impact factor: 17.970

5.  Crystal structure of the nucleosome core particle at 2.8 A resolution.

Authors:  K Luger; A W Mäder; R K Richmond; D F Sargent; T J Richmond
Journal:  Nature       Date:  1997-09-18       Impact factor: 49.962

Review 6.  The histone shuffle: histone chaperones in an energetic dance.

Authors:  Chandrima Das; Jessica K Tyler; Mair E A Churchill
Journal:  Trends Biochem Sci       Date:  2010-05-03       Impact factor: 13.807

Review 7.  New functions for an old variant: no substitute for histone H3.3.

Authors:  Simon J Elsaesser; Aaron D Goldberg; C David Allis
Journal:  Curr Opin Genet Dev       Date:  2010-02-12       Impact factor: 5.578

Review 8.  Evolution of the SNF2 family of proteins: subfamilies with distinct sequences and functions.

Authors:  J A Eisen; K S Sweder; P C Hanawalt
Journal:  Nucleic Acids Res       Date:  1995-07-25       Impact factor: 16.971

9.  Histone H3.3 incorporation provides a unique and functionally essential telomeric chromatin in embryonic stem cells.

Authors:  Lee H Wong; Hua Ren; Evan Williams; James McGhie; Soyeon Ahn; Marcus Sim; Angela Tam; Elizabeth Earle; Melissa A Anderson; Jeffrey Mann; K H Andy Choo
Journal:  Genome Res       Date:  2009-02-05       Impact factor: 9.043

10.  The chromatin remodeller ACF acts as a dimeric motor to space nucleosomes.

Authors:  Lisa R Racki; Janet G Yang; Nariman Naber; Peretz D Partensky; Ashley Acevedo; Thomas J Purcell; Roger Cooke; Yifan Cheng; Geeta J Narlikar
Journal:  Nature       Date:  2009-12-24       Impact factor: 49.962

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  51 in total

Review 1.  Nucleosome remodeling and epigenetics.

Authors:  Peter B Becker; Jerry L Workman
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-09-01       Impact factor: 10.005

Review 2.  Nucleosome sliding mechanisms: new twists in a looped history.

Authors:  Felix Mueller-Planitz; Henrike Klinker; Peter B Becker
Journal:  Nat Struct Mol Biol       Date:  2013-09       Impact factor: 15.369

3.  Nucleosome sliding by Chd1 does not require rigid coupling between DNA-binding and ATPase domains.

Authors:  Ilana M Nodelman; Gregory D Bowman
Journal:  EMBO Rep       Date:  2013-10-15       Impact factor: 8.807

4.  Histone core phosphorylation regulates DNA accessibility.

Authors:  Matthew Brehove; Tao Wang; Justin North; Yi Luo; Sarah J Dreher; John C Shimko; Jennifer J Ottesen; Karolin Luger; Michael G Poirier
Journal:  J Biol Chem       Date:  2015-07-13       Impact factor: 5.157

5.  Genetic dissection of plant growth habit in chickpea.

Authors:  Hari D Upadhyaya; Deepak Bajaj; Rishi Srivastava; Anurag Daware; Udita Basu; Shailesh Tripathi; Chellapilla Bharadwaj; Akhilesh K Tyagi; Swarup K Parida
Journal:  Funct Integr Genomics       Date:  2017-06-09       Impact factor: 3.410

6.  First-in-Class Inhibitors of Oncogenic CHD1L with Preclinical Activity against Colorectal Cancer.

Authors:  Joshua M Abbott; Qiong Zhou; Hector Esquer; Laura Pike; Travis P Broneske; Sébastien Rinaldetti; Adedoyin D Abraham; Dominique A Ramirez; Paul J Lunghofer; Todd M Pitts; Daniel P Regan; Aik Choon Tan; Daniel L Gustafson; Wells A Messersmith; Daniel V LaBarbera
Journal:  Mol Cancer Ther       Date:  2020-06-04       Impact factor: 6.261

7.  RNA-sequencing analysis of high glucose-treated monocytes reveals novel transcriptome signatures and associated epigenetic profiles.

Authors:  Feng Miao; Zhuo Chen; Lingxiao Zhang; Jinhui Wang; Harry Gao; Xiwei Wu; Rama Natarajan
Journal:  Physiol Genomics       Date:  2013-02-05       Impact factor: 3.107

8.  Efficient detection of unpaired DNA requires a member of the rad54-like family of homologous recombination proteins.

Authors:  Dilini A Samarajeewa; Pegan A Sauls; Kevin J Sharp; Zachary J Smith; Hua Xiao; Katie M Groskreutz; Tyler L Malone; Erin C Boone; Kevin A Edwards; Patrick K T Shiu; Erik D Larson; Thomas M Hammond
Journal:  Genetics       Date:  2014-08-21       Impact factor: 4.562

Review 9.  Functions of SMARCAL1, ZRANB3, and HLTF in maintaining genome stability.

Authors:  Lisa A Poole; David Cortez
Journal:  Crit Rev Biochem Mol Biol       Date:  2017-09-28       Impact factor: 8.250

10.  Crystal structure of the chromodomain helicase DNA-binding protein 1 (Chd1) DNA-binding domain in complex with DNA.

Authors:  Amit Sharma; Katherine R Jenkins; Annie Héroux; Gregory D Bowman
Journal:  J Biol Chem       Date:  2011-10-27       Impact factor: 5.157

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