Literature DB >> 21856823

Identification of a perchlorate reduction genomic island with novel regulatory and metabolic genes.

Ryan A Melnyk1, Anna Engelbrektson, Iain C Clark, Hans K Carlson, Kathy Byrne-Bailey, John D Coates.   

Abstract

A comparative analysis of the genomes of four dissimilatory (per)chlorate-reducing bacteria has revealed a genomic island associated with perchlorate reduction. In addition to the characterized metabolic genes for perchlorate reductase and chlorite dismutase, the island contains multiple conserved uncharacterized genes possibly involved in electron transport and regulation.

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Year:  2011        PMID： 21856823      PMCID： PMC3194888          DOI： 10.1128/AEM.05758-11

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  27 in total

1.  A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood.

Authors:  Stéphane Guindon; Olivier Gascuel
Journal:  Syst Biol       Date:  2003-10       Impact factor: 15.683

Review 2.  Microbial perchlorate reduction: rocket-fueled metabolism.

Authors:  John D Coates; Laurie A Achenbach
Journal:  Nat Rev Microbiol       Date:  2004-07       Impact factor: 60.633

3.  Dechloromonas agitata gen. nov., sp. nov. and Dechlorosoma suillum gen. nov., sp. nov., two novel environmentally dominant (per)chlorate-reducing bacteria and their phylogenetic position.

Authors:  L A Achenbach; U Michaelidou; R A Bruce; J Fryman; J D Coates
Journal:  Int J Syst Evol Microbiol       Date:  2001-03       Impact factor: 2.747

4.  Reduction of (per)chlorate by a novel organism isolated from paper mill waste.

Authors:  R A Bruce; L A Achenbach; J D Coates
Journal:  Environ Microbiol       Date:  1999-08       Impact factor: 5.491

5.  Ubiquity and diversity of dissimilatory (per)chlorate-reducing bacteria.

Authors:  J D Coates; U Michaelidou; R A Bruce; S M O'Connor; J N Crespi; L A Achenbach
Journal:  Appl Environ Microbiol       Date:  1999-12       Impact factor: 4.792

6.  Site-specific integrative elements of rhizobiophage 16-3 can integrate into proline tRNA (CGG) genes in different bacterial genera.

Authors:  Szabolcs Semsey; Béla Blaha; Krisztián Köles; László Orosz; Péter P Papp
Journal:  J Bacteriol       Date:  2002-01       Impact factor: 3.490

7.  Anaerobic benzene oxidation coupled to nitrate reduction in pure culture by two strains of Dechloromonas.

Authors:  J D Coates; R Chakraborty; J G Lack; S M O'Connor; K A Cole; K S Bender; L A Achenbach
Journal:  Nature       Date:  2001-06-28       Impact factor: 49.962

8.  Environmental factors that control microbial perchlorate reduction.

Authors:  Swades K Chaudhuri; Susan M O'Connor; Ruth L Gustavson; Laurie A Achenbach; John D Coates
Journal:  Appl Environ Microbiol       Date:  2002-09       Impact factor: 4.792

9.  Sequencing and transcriptional analysis of the chlorite dismutase gene of Dechloromonas agitata and its use as a metabolic probe.

Authors:  Kelly S Bender; Susan M O'Connor; Romy Chakraborty; John D Coates; Laurie A Achenbach
Journal:  Appl Environ Microbiol       Date:  2002-10       Impact factor: 4.792

10.  Site-specific mobilization of vinyl chloride respiration islands by a mechanism common in Dehalococcoides.

Authors:  Paul J McMurdie; Laura A Hug; Elizabeth A Edwards; Susan Holmes; Alfred M Spormann
Journal:  BMC Genomics       Date:  2011-06-02       Impact factor: 3.969
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  22 in total

1.  Complete genome sequence of the anaerobic perchlorate-reducing bacterium Azospira suillum strain PS.

Authors:  Kathryne G Byrne-Bailey; John D Coates
Journal:  J Bacteriol       Date:  2012-05       Impact factor: 3.490

2.  Phenotypic and genotypic description of Sedimenticola selenatireducens strain CUZ, a marine (per)chlorate-respiring gammaproteobacterium, and its close relative the chlorate-respiring Sedimenticola strain NSS.

Authors:  Charlotte I Carlström; Dana E Loutey; Ouwei Wang; Anna Engelbrektson; Iain Clark; Lauren N Lucas; Pranav Y Somasekhar; John D Coates
Journal:  Appl Environ Microbiol       Date:  2015-02-06       Impact factor: 4.792

3.  Distinguishing Active Site Characteristics of Chlorite Dismutases with Their Cyanide Complexes.

Authors:  Zachary Geeraerts; Arianna I Celis; Jeffery A Mayfield; Megan Lorenz; Kenton R Rodgers; Jennifer L DuBois; Gudrun S Lukat-Rodgers
Journal:  Biochemistry       Date:  2018-02-16       Impact factor: 3.162

4.  Active Sites of O2-Evolving Chlorite Dismutases Probed by Halides and Hydroxides and New Iron-Ligand Vibrational Correlations.

Authors:  Zachary Geeraerts; Kenton R Rodgers; Jennifer L DuBois; Gudrun S Lukat-Rodgers
Journal:  Biochemistry       Date:  2017-08-17       Impact factor: 3.162

5.  Identification of a parasitic symbiosis between respiratory metabolisms in the biogeochemical chlorine cycle.

Authors:  Tyler P Barnum; Yiwei Cheng; Kaisle A Hill; Lauren N Lucas; Hans K Carlson; John D Coates
Journal:  ISME J       Date:  2020-02-05       Impact factor: 10.302

6.  Genome-resolved metagenomics identifies genetic mobility, metabolic interactions, and unexpected diversity in perchlorate-reducing communities.

Authors:  Tyler P Barnum; Israel A Figueroa; Charlotte I Carlström; Lauren N Lucas; Anna L Engelbrektson; John D Coates
Journal:  ISME J       Date:  2018-02-23       Impact factor: 10.302

7.  Repeated horizontal gene transfers triggered parallel evolution of magnetotaxis in two evolutionary divergent lineages of magnetotactic bacteria.

Authors:  Caroline L Monteil; Denis S Grouzdev; Guy Perrière; Béatrice Alonso; Zoé Rouy; Stéphane Cruveiller; Nicolas Ginet; David Pignol; Christopher T Lefevre
Journal:  ISME J       Date:  2020-04-15       Impact factor: 10.302

Review 8.  Production of dioxygen in the dark: dismutases of oxyanions.

Authors:  Jennifer L DuBois; Sunil Ojha
Journal:  Met Ions Life Sci       Date:  2015

9.  Physiological and genetic description of dissimilatory perchlorate reduction by the novel marine bacterium Arcobacter sp. strain CAB.

Authors:  Charlotte I Carlström; Ouwei Wang; Ryan A Melnyk; Stefan Bauer; Joyce Lee; Anna Engelbrektson; John D Coates
Journal:  MBio       Date:  2013-05-21       Impact factor: 7.867

10.  Genome analysis and physiological comparison of Alicycliphilus denitrificans strains BC and K601(T.).

Authors:  Margreet J Oosterkamp; Teun Veuskens; Flávia Talarico Saia; Sander A B Weelink; Lynne A Goodwin; Hajnalka E Daligault; David C Bruce; John C Detter; Roxanne Tapia; Cliff S Han; Miriam L Land; Loren J Hauser; Alette A M Langenhoff; Jan Gerritse; Willem J H van Berkel; Dietmar H Pieper; Howard Junca; Hauke Smidt; Gosse Schraa; Mark Davids; Peter J Schaap; Caroline M Plugge; Alfons J M Stams
Journal:  PLoS One       Date:  2013-06-25       Impact factor: 3.240
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