Literature DB >> 21852429

Proteomics of gliomas: initial biomarker discovery and evolution of technology.

Juliya Kalinina1, Junmin Peng, James C Ritchie, Erwin G Van Meir.   

Abstract

Gliomas are a group of aggressive brain tumors that diffusely infiltrate adjacent brain tissues, rendering them largely incurable, even with multiple treatment modalities and agents. Mostly asymptomatic at early stages, they present in several subtypes with astrocytic or oligodendrocytic features and invariably progress to malignant forms. Gliomas are difficult to classify precisely because of interobserver variability during histopathologic grading. Identifying biological signatures of each glioma subtype through protein biomarker profiling of tumor or tumor-proximal fluids is therefore of high priority. Such profiling not only may provide clues regarding tumor classification but may identify clinical biomarkers and pathologic targets for the development of personalized treatments. In the past decade, differential proteomic profiling techniques have utilized tumor, cerebrospinal fluid, and plasma from glioma patients to identify the first candidate diagnostic, prognostic, predictive, and therapeutic response markers, highlighting the potential for glioma biomarker discovery. The number of markers identified, however, has been limited, their reproducibility between studies is unclear, and none have been validated for clinical use. Recent technological advancements in methodologies for high-throughput profiling, which provide easy access, rapid screening, low sample consumption, and accurate protein identification, are anticipated to accelerate brain tumor biomarker discovery. Reliable tools for biomarker verification forecast translation of the biomarkers into clinical diagnostics in the foreseeable future. Herein we update the reader on the recent trends and directions in glioma proteomics, including key findings and established and emerging technologies for analysis, together with challenges we are still facing in identifying and verifying potential glioma biomarkers.

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Year:  2011        PMID: 21852429      PMCID: PMC3158015          DOI: 10.1093/neuonc/nor078

Source DB:  PubMed          Journal:  Neuro Oncol        ISSN: 1522-8517            Impact factor:   12.300


  113 in total

Review 1.  Large-scale database searching using tandem mass spectra: looking up the answer in the back of the book.

Authors:  Rovshan G Sadygov; Daniel Cociorva; John R Yates
Journal:  Nat Methods       Date:  2004-12       Impact factor: 28.547

2.  Optimal replication and the importance of experimental design for gel-based quantitative proteomics.

Authors:  Sybille M N Hunt; Mervyn R Thomas; Lucille T Sebastian; Susanne K Pedersen; Rebecca L Harcourt; Andrew J Sloane; Marc R Wilkins
Journal:  J Proteome Res       Date:  2005 May-Jun       Impact factor: 4.466

Review 3.  The development of the DIGE system: 2D fluorescence difference gel analysis technology.

Authors:  Rita Marouga; Stephen David; Edward Hawkins
Journal:  Anal Bioanal Chem       Date:  2005-05-18       Impact factor: 4.142

Review 4.  Dynamics of CNS barriers: evolution, differentiation, and modulation.

Authors:  N Joan Abbott
Journal:  Cell Mol Neurobiol       Date:  2005-02       Impact factor: 5.046

5.  Proteomic-based prognosis of brain tumor patients using direct-tissue matrix-assisted laser desorption ionization mass spectrometry.

Authors:  Sarah A Schwartz; Robert J Weil; Reid C Thompson; Yu Shyr; Jason H Moore; Steven A Toms; Mahlon D Johnson; Richard M Caprioli
Journal:  Cancer Res       Date:  2005-09-01       Impact factor: 12.701

6.  Proteomic studies on low- and high-grade human brain astrocytomas.

Authors:  Federico Odreman; Marco Vindigni; Marlen Lujardo Gonzales; Benedetta Niccolini; Giovanni Candiano; Bruno Zanotti; Miran Skrap; Stefano Pizzolitto; Giorgio Stanta; Alessandro Vindigni
Journal:  J Proteome Res       Date:  2005 May-Jun       Impact factor: 4.466

Review 7.  Imaging mass spectrometry: principles and potentials.

Authors:  Pierre Chaurand; Sarah A Schwartz; Michelle L Reyzer; Richard M Caprioli
Journal:  Toxicol Pathol       Date:  2005       Impact factor: 1.902

Review 8.  Proteome analysis in the clinical chemistry laboratory: myth or reality?

Authors:  Pier Giorgio Righetti; Annalisa Castagna; Francesca Antonucci; Chiara Piubelli; Daniela Cecconi; Natascia Campostrini; Chiara Rustichelli; Paolo Antonioli; Gianluigi Zanusso; Salvatore Monaco; Lee Lomas; Egisto Boschetti
Journal:  Clin Chim Acta       Date:  2005-07-24       Impact factor: 3.786

9.  Proteins and protein pattern differences between glioma cell lines and glioblastoma multiforme.

Authors:  Timothy W Vogel; Zhengping Zhuang; Jie Li; Hiroaki Okamoto; Makoto Furuta; Youn-Soo Lee; Weifen Zeng; Edward H Oldfield; Alexander O Vortmeyer; Robert J Weil
Journal:  Clin Cancer Res       Date:  2005-05-15       Impact factor: 12.531

10.  Differential protein expression in human gliomas and molecular insights.

Authors:  Vaibhav C Chumbalkar; Chanumolu Subhashini; Vishnu M Dhople; Curam S Sundaram; Medicharla V Jagannadham; Kafnam N Kumar; Pasumarti N B S Srinivas; Ravinutala Mythili; Mulla K Rao; Mahesh J Kulkarni; Sridevi Hegde; Alangar S Hegde; Cini Samual; Vani Santosh; Lalji Singh; Ravi Sirdeshmukh
Journal:  Proteomics       Date:  2005-03       Impact factor: 3.984

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  26 in total

Review 1.  Matricellular proteins in drug delivery: Therapeutic targets, active agents, and therapeutic localization.

Authors:  Andrew J Sawyer; Themis R Kyriakides
Journal:  Adv Drug Deliv Rev       Date:  2016-01-04       Impact factor: 15.470

2.  Discovery of colorectal cancer biomarker candidates by membrane proteomic analysis and subsequent verification using selected reaction monitoring (SRM) and tissue microarray (TMA) analysis.

Authors:  Hideaki Kume; Satoshi Muraoka; Takahisa Kuga; Jun Adachi; Ryohei Narumi; Shio Watanabe; Masayoshi Kuwano; Yoshio Kodera; Kazuyuki Matsushita; Junya Fukuoka; Takeshi Masuda; Yasushi Ishihama; Hisahiro Matsubara; Fumio Nomura; Takeshi Tomonaga
Journal:  Mol Cell Proteomics       Date:  2014-03-31       Impact factor: 5.911

3.  Cerebrospinal fluid and serum IL-8, CCL2, and ICAM-1 concentrations in astrocytic brain tumor patients.

Authors:  O M Koper; J Kamińska; K Sawicki; J Reszeć; R Rutkowski; M Jadeszko; Z Mariak; V Dymicka-Piekarska; H Kemona
Journal:  Ir J Med Sci       Date:  2017-10-30       Impact factor: 1.568

4.  Total protein is an effective loading control for cerebrospinal fluid western blots.

Authors:  Mahlon A Collins; Jiyan An; Danielle Peller; Robert Bowser
Journal:  J Neurosci Methods       Date:  2015-05-22       Impact factor: 2.390

5.  Seven genes for the prognostic prediction in patients with glioma.

Authors:  G-H Zhang; Q-Y Zhong; X-X Gou; E-X Fan; Y Shuai; M-N Wu; G-J Yue
Journal:  Clin Transl Oncol       Date:  2019-02-14       Impact factor: 3.405

Review 6.  Circulating glioma biomarkers.

Authors:  Johan M Kros; Dana M Mustafa; Lennard J M Dekker; Peter A E Sillevis Smitt; Theo M Luider; Ping-Pin Zheng
Journal:  Neuro Oncol       Date:  2014-09-24       Impact factor: 12.300

Review 7.  Proteomic analysis of cerebrospinal fluid: toward the identification of biomarkers for gliomas.

Authors:  Fang Shen; Yang Zhang; Yu Yao; Wei Hua; Hai-Shi Zhang; Jing-Song Wu; Ping Zhong; Liang-Fu Zhou
Journal:  Neurosurg Rev       Date:  2014-05-01       Impact factor: 3.042

Review 8.  Beyond the World Health Organization grading of infiltrating gliomas: advances in the molecular genetics of glioma classification.

Authors:  Krishanthan Vigneswaran; Stewart Neill; Costas G Hadjipanayis
Journal:  Ann Transl Med       Date:  2015-05

9.  Comprehensive characterization of glioblastoma tumor tissues for biomarker identification using mass spectrometry-based label-free quantitative proteomics.

Authors:  Maxime S Heroux; Marla A Chesnik; Brian D Halligan; Mona Al-Gizawiy; Jennifer M Connelly; Wade M Mueller; Scott D Rand; Elizabeth J Cochran; Peter S LaViolette; Mark G Malkin; Kathleen M Schmainda; Shama P Mirza
Journal:  Physiol Genomics       Date:  2014-05-06       Impact factor: 3.107

Review 10.  Liquid Biomarkers for Improved Diagnosis and Classification of CNS Tumors.

Authors:  Severa Bunda; Jeffrey A Zuccato; Mathew R Voisin; Justin Z Wang; Farshad Nassiri; Vikas Patil; Sheila Mansouri; Gelareh Zadeh
Journal:  Int J Mol Sci       Date:  2021-04-27       Impact factor: 5.923

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