Literature DB >> 21850042

Dynamic interactions between transposable elements and their hosts.

Henry L Levin1, John V Moran.   

Abstract

Transposable elements (TEs) have a unique ability to mobilize to new genomic locations, and the major advance of second-generation DNA sequencing has provided insights into the dynamic relationship between TEs and their hosts. It now is clear that TEs have adopted diverse strategies - such as specific integration sites or patterns of activity - to thrive in host environments that are replete with mechanisms, such as small RNAs or epigenetic marks, that combat TE amplification. Emerging evidence suggests that TE mobilization might sometimes benefit host genomes by enhancing genetic diversity, although TEs are also implicated in diseases such as cancer. Here, we discuss recent findings about how, where and when TEs insert in diverse organisms.

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Year:  2011        PMID: 21850042      PMCID: PMC3192332          DOI: 10.1038/nrg3030

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  187 in total

1.  The significance of responses of the genome to challenge.

Authors:  B McClintock
Journal:  Science       Date:  1984-11-16       Impact factor: 47.728

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Authors:  Christopher B Schaefer; Steen K T Ooi; Timothy H Bestor; Déborah Bourc'his
Journal:  Science       Date:  2007-04-20       Impact factor: 47.728

3.  Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition.

Authors:  Q Feng; J V Moran; H H Kazazian; J D Boeke
Journal:  Cell       Date:  1996-11-29       Impact factor: 41.582

4.  Human L1 retrotransposition: cis preference versus trans complementation.

Authors:  W Wei; N Gilbert; S L Ooi; J F Lawler; E M Ostertag; H H Kazazian; J D Boeke; J V Moran
Journal:  Mol Cell Biol       Date:  2001-02       Impact factor: 4.272

5.  Human LINE retrotransposons generate processed pseudogenes.

Authors:  C Esnault; J Maestre; T Heidmann
Journal:  Nat Genet       Date:  2000-04       Impact factor: 38.330

6.  Evolution of diverse mechanisms for protecting chromosome ends by Drosophila TART telomere retrotransposons.

Authors:  Janet A George; Karen L Traverse; P G DeBaryshe; Kerry J Kelley; Mary-Lou Pardue
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-18       Impact factor: 11.205

7.  DNA methylation of retrotransposon genes is regulated by Piwi family members MILI and MIWI2 in murine fetal testes.

Authors:  Satomi Kuramochi-Miyagawa; Toshiaki Watanabe; Kengo Gotoh; Yasushi Totoki; Atsushi Toyoda; Masahito Ikawa; Noriko Asada; Kanako Kojima; Yuka Yamaguchi; Takashi W Ijiri; Kenichiro Hata; En Li; Yoichi Matsuda; Tohru Kimura; Masaru Okabe; Yoshiyuki Sakaki; Hiroyuki Sasaki; Toru Nakano
Journal:  Genes Dev       Date:  2008-04-01       Impact factor: 11.361

8.  LINE-mediated retrotransposition of marked Alu sequences.

Authors:  Marie Dewannieux; Cécile Esnault; Thierry Heidmann
Journal:  Nat Genet       Date:  2003-08-03       Impact factor: 38.330

9.  Trex1 prevents cell-intrinsic initiation of autoimmunity.

Authors:  Daniel B Stetson; Joan S Ko; Thierry Heidmann; Ruslan Medzhitov
Journal:  Cell       Date:  2008-08-22       Impact factor: 41.582

Review 10.  Insertional polymorphisms: a new lease of life for endogenous retroviruses in human disease.

Authors:  David Moyes; David J Griffiths; Patrick J Venables
Journal:  Trends Genet       Date:  2007-05-23       Impact factor: 11.639

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  257 in total

Review 1.  Male germline control of transposable elements.

Authors:  Jianqiang Bao; Wei Yan
Journal:  Biol Reprod       Date:  2012-05-31       Impact factor: 4.285

Review 2.  Endogenous viruses: insights into viral evolution and impact on host biology.

Authors:  Cédric Feschotte; Clément Gilbert
Journal:  Nat Rev Genet       Date:  2012-03-16       Impact factor: 53.242

3.  Genomic incompatibilities in the diploid and tetraploid offspring of the goldfish × common carp cross.

Authors:  Shaojun Liu; Jing Luo; Jing Chai; Li Ren; Yi Zhou; Feng Huang; Xiaochuan Liu; Yubao Chen; Chun Zhang; Min Tao; Bin Lu; Wei Zhou; Guoliang Lin; Chao Mai; Shuo Yuan; Jun Wang; Tao Li; Qinbo Qin; Hao Feng; Kaikun Luo; Jun Xiao; Huan Zhong; Rurong Zhao; Wei Duan; Zhenyan Song; Yanqin Wang; Jing Wang; Li Zhong; Lu Wang; Zhaoli Ding; Zhenglin Du; Xuemei Lu; Yun Gao; Robert W Murphy; Yun Liu; Axel Meyer; Ya-Ping Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2016-01-14       Impact factor: 11.205

4.  Single-Nucleotide-Specific Targeting of the Tf1 Retrotransposon Promoted by the DNA-Binding Protein Sap1 of Schizosaccharomyces pombe.

Authors:  Anthony Hickey; Caroline Esnault; Anasuya Majumdar; Atreyi Ghatak Chatterjee; James R Iben; Philip G McQueen; Andrew X Yang; Takeshi Mizuguchi; Shiv I S Grewal; Henry L Levin
Journal:  Genetics       Date:  2015-09-09       Impact factor: 4.562

Review 5.  Paleovirology of 'syncytins', retroviral env genes exapted for a role in placentation.

Authors:  Christian Lavialle; Guillaume Cornelis; Anne Dupressoir; Cécile Esnault; Odile Heidmann; Cécile Vernochet; Thierry Heidmann
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2013-08-12       Impact factor: 6.237

Review 6.  Small RNAs, big impact: small RNA pathways in transposon control and their effect on the host stress response.

Authors:  Bayly S Wheeler
Journal:  Chromosome Res       Date:  2013-12       Impact factor: 5.239

Review 7.  The role of transposable elements in health and diseases of the central nervous system.

Authors:  Matthew T Reilly; Geoffrey J Faulkner; Joshua Dubnau; Igor Ponomarev; Fred H Gage
Journal:  J Neurosci       Date:  2013-11-06       Impact factor: 6.167

Review 8.  Retrotransposons as regulators of gene expression.

Authors:  Reyad A Elbarbary; Bronwyn A Lucas; Lynne E Maquat
Journal:  Science       Date:  2016-02-11       Impact factor: 47.728

Review 9.  Multiple LINEs of retrotransposon silencing mechanisms in the mammalian germline.

Authors:  Fang Yang; P Jeremy Wang
Journal:  Semin Cell Dev Biol       Date:  2016-03-05       Impact factor: 7.727

10.  CENP-B cooperates with Set1 in bidirectional transcriptional silencing and genome organization of retrotransposons.

Authors:  David R Lorenz; Irina V Mikheyeva; Peter Johansen; Lauren Meyer; Anastasia Berg; Shiv I S Grewal; Hugh P Cam
Journal:  Mol Cell Biol       Date:  2012-08-20       Impact factor: 4.272

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