Literature DB >> 21844369

Remarkable patterns of surface water ordering around polarized buckminsterfullerene.

Gaurav Chopra1, Michael Levitt.   

Abstract

Accurate description of water structure affects simulation of protein folding, substrate binding, macromolecular recognition, and complex formation. We study the hydration of buckminsterfullerene, the smallest hydrophobic nanosphere, by molecular dynamics simulations using a state-of-the-art quantum mechanical polarizable force field (QMPFF3), derived from quantum mechanical data at the MP2/aug-cc-pVTZ(-hp) level augmented by CCSD(T). QMPFF3 calculation of the hydrophobic effect is compared to that obtained with empirical force fields. Using a novel and highly sensitive method, we see polarization increases ordered water structure so that the imprint of the hydrophobic surface atoms on the surrounding waters is stronger and extends to long-range. We see less water order for empirical force fields. The greater order seen with QMPFF3 will affect biological processes through a stronger hydrophobic effect.

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Year:  2011        PMID: 21844369      PMCID: PMC3167499          DOI: 10.1073/pnas.1110626108

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  29 in total

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Authors:  Sandeep Patel; Alexander D Mackerell; Charles L Brooks
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4.  Interactions of polarizable media in water: a molecular dynamics approach.

Authors:  A Wynveen; F Bresme
Journal:  J Chem Phys       Date:  2006-03-14       Impact factor: 3.488

5.  On the influence of solute polarizability on the hydrophobic interaction.

Authors:  Fernando Bresme; Aaron Wynveen
Journal:  J Chem Phys       Date:  2007-01-28       Impact factor: 3.488

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Authors:  P G Kusalik; I M Svishchev
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7.  Static polarizabilities of single-wall carbon nanotubes.

Authors: 
Journal:  Phys Rev B Condens Matter       Date:  1995-09-15

8.  CHARMM fluctuating charge force field for proteins: I parameterization and application to bulk organic liquid simulations.

Authors:  Sandeep Patel; Charles L Brooks
Journal:  J Comput Chem       Date:  2004-01-15       Impact factor: 3.376

9.  Hydrophobic collapse in multidomain protein folding.

Authors:  Ruhong Zhou; Xuhui Huang; Claudio J Margulis; Bruce J Berne
Journal:  Science       Date:  2004-09-10       Impact factor: 47.728

Review 10.  Functionalized fullerenes in water. The first 10 years of their chemistry, biology, and nanoscience.

Authors:  Eiichi Nakamura; Hiroyuki Isobe
Journal:  Acc Chem Res       Date:  2003-11       Impact factor: 22.384

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  3 in total

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2.  Exploring Adsorption of Water and Ions on Carbon Surfaces using a Polarizable Force Field.

Authors:  Patric Schyman; William L Jorgensen
Journal:  J Phys Chem Lett       Date:  2013-01-17       Impact factor: 6.475

3.  Biomolecular Force Field Parameterization via Atoms-in-Molecule Electron Density Partitioning.

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Journal:  J Chem Theory Comput       Date:  2016-04-21       Impact factor: 6.006

  3 in total

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