Literature DB >> 21843668

Molecular call and response: the physiology of bacterial small RNAs.

Gregory R Richards1, Carin K Vanderpool.   

Abstract

The vital role of bacterial small RNAs (sRNAs) in cellular regulation is now well-established. Although many diverse mechanisms by which sRNAs bring about changes in gene expression have been thoroughly described, comparatively less is known about their biological roles and effects on cell physiology. Nevertheless, for some sRNAs, insight has been gained into the intricate regulatory interplay that is required to sense external environmental and internal metabolic cues and turn them into physiological outcomes. Here, we review examples of regulation by selected sRNAs, emphasizing signals and regulators required for sRNA expression, sRNA regulatory targets, and the resulting consequences for the cell. We highlight sRNAs involved in regulation of the processes of iron homeostasis (RyhB, PrrF, and FsrA) and carbon metabolism (Spot 42, CyaR, and SgrS). 2011 Elsevier B.V. All rights reserved.

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Year:  2011        PMID: 21843668      PMCID: PMC3186873          DOI: 10.1016/j.bbagrm.2011.07.013

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  77 in total

Review 1.  Hfq structure, function and ligand binding.

Authors:  Richard G Brennan; Todd M Link
Journal:  Curr Opin Microbiol       Date:  2007-03-28       Impact factor: 7.934

Review 2.  Clustered regularly interspaced short palindromic repeats (CRISPRs): the hallmark of an ingenious antiviral defense mechanism in prokaryotes.

Authors:  Sinan Al-Attar; Edze R Westra; John van der Oost; Stan J J Brouns
Journal:  Biol Chem       Date:  2011-02-07       Impact factor: 3.915

Review 3.  Structural relationships in the OmpR family of winged-helix transcription factors.

Authors:  E Martínez-Hackert; A M Stock
Journal:  J Mol Biol       Date:  1997-06-13       Impact factor: 5.469

4.  Deletion of the spf (spot 42 RNA) gene of Escherichia coli.

Authors:  G F Hatfull; C M Joyce
Journal:  J Bacteriol       Date:  1986-06       Impact factor: 3.490

5.  Multiple regulators control expression of the Entner-Doudoroff aldolase (Eda) of Escherichia coli.

Authors:  Elizabeth L Murray; Tyrrell Conway
Journal:  J Bacteriol       Date:  2005-02       Impact factor: 3.490

6.  Spot 42 RNA mediates discoordinate expression of the E. coli galactose operon.

Authors:  Thorleif Møller; Thomas Franch; Christina Udesen; Kenn Gerdes; Poul Valentin-Hansen
Journal:  Genes Dev       Date:  2002-07-01       Impact factor: 11.361

7.  Quorum sensing in Escherichia coli is signaled by AI-2/LsrR: effects on small RNA and biofilm architecture.

Authors:  Jun Li; Can Attila; Liang Wang; Thomas K Wood; James J Valdes; William E Bentley
Journal:  J Bacteriol       Date:  2007-06-08       Impact factor: 3.490

8.  A gene between polA and glnA retards growth of Escherichia coli when present in multiple copies: physiological effects of the gene for spot 42 RNA.

Authors:  P W Rice; J E Dahlberg
Journal:  J Bacteriol       Date:  1982-12       Impact factor: 3.490

9.  Identification of tandem duplicate regulatory small RNAs in Pseudomonas aeruginosa involved in iron homeostasis.

Authors:  Paula J Wilderman; Nathaniel A Sowa; David J FitzGerald; Peter C FitzGerald; Susan Gottesman; Urs A Ochsner; Michael L Vasil
Journal:  Proc Natl Acad Sci U S A       Date:  2004-06-21       Impact factor: 11.205

10.  Regulation of galactose operon expression: glucose effects and role of cyclic adenosine 3',5'-monophosphate.

Authors:  E Joseph; A Danchin; A Ullmann
Journal:  J Bacteriol       Date:  1981-04       Impact factor: 3.490

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  38 in total

1.  Depletion of glycolytic intermediates plays a key role in glucose-phosphate stress in Escherichia coli.

Authors:  Gregory R Richards; Maulik V Patel; Chelsea R Lloyd; Carin K Vanderpool
Journal:  J Bacteriol       Date:  2013-08-30       Impact factor: 3.490

2.  Reprogramming of gene expression in Escherichia coli cultured on pyruvate versus glucose.

Authors:  Anna Chao Kaberdina; Olatz Ruiz-Larrabeiti; Sue Lin-Chao; Vladimir R Kaberdin
Journal:  Mol Genet Genomics       Date:  2019-07-30       Impact factor: 3.291

3.  The Small Protein SgrT Controls Transport Activity of the Glucose-Specific Phosphotransferase System.

Authors:  Chelsea R Lloyd; Seongjin Park; Jingyi Fei; Carin K Vanderpool
Journal:  J Bacteriol       Date:  2017-05-09       Impact factor: 3.490

4.  Induction of the Pho regulon suppresses the growth defect of an Escherichia coli sgrS mutant, connecting phosphate metabolism to the glucose-phosphate stress response.

Authors:  Gregory R Richards; Carin K Vanderpool
Journal:  J Bacteriol       Date:  2012-03-16       Impact factor: 3.490

5.  Small RNA binding-site multiplicity involved in translational regulation of a polycistronic mRNA.

Authors:  Jennifer B Rice; Divya Balasubramanian; Carin K Vanderpool
Journal:  Proc Natl Acad Sci U S A       Date:  2012-09-17       Impact factor: 11.205

6.  Targeted decay of a regulatory small RNA by an adaptor protein for RNase E and counteraction by an anti-adaptor RNA.

Authors:  Yvonne Göpel; Kai Papenfort; Birte Reichenbach; Jörg Vogel; Boris Görke
Journal:  Genes Dev       Date:  2013-03-01       Impact factor: 11.361

7.  New developments in post-transcriptional regulation of operons by small RNAs.

Authors:  Divya Balasubramanian; Carin K Vanderpool
Journal:  RNA Biol       Date:  2013-02-07       Impact factor: 4.652

8.  An evolutionarily conserved RNase-based mechanism for repression of transcriptional positive autoregulation.

Authors:  Elisabeth J Wurtmann; Alexander V Ratushny; Min Pan; Karlyn D Beer; John D Aitchison; Nitin S Baliga
Journal:  Mol Microbiol       Date:  2014-03-19       Impact factor: 3.501

9.  Transcript degradation and noise of small RNA-controlled genes in a switch activated network in Escherichia coli.

Authors:  Rinat Arbel-Goren; Asaf Tal; Bibudha Parasar; Alvah Dym; Nina Costantino; Javier Muñoz-García; Donald L Court; Joel Stavans
Journal:  Nucleic Acids Res       Date:  2016-04-16       Impact factor: 16.971

10.  Physiological consequences of multiple-target regulation by the small RNA SgrS in Escherichia coli.

Authors:  Yan Sun; Carin K Vanderpool
Journal:  J Bacteriol       Date:  2013-07-19       Impact factor: 3.490

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