Literature DB >> 23392245

New developments in post-transcriptional regulation of operons by small RNAs.

Divya Balasubramanian1, Carin K Vanderpool.   

Abstract

Small regulatory RNAs (sRNAs) are influential post-transcriptional modulators of gene expression in bacteria. They regulate gene expression by base pairing to target mRNAs, leading to inhibition of translation and/or alteration of mRNA stability. Recently, several sRNAs have been discovered to regulate genes encoded in operons. In some cases, these sRNAs regulate all the genes encoded by the polycistronic mRNA (coordinate regulation) while in other cases, only a select subset of cistrons is controlled by the sRNA (discoordinate regulation). In this point of view, mechanisms of regulation and characteristics of sRNA-mRNA interactions involving polycistronic mRNAs are described. The diversity in mechanisms represented by these few characterized examples suggests that we still have much to learn about sRNA regulation of long polycistronic messages.

Keywords:  Hfq; RyhB; SgrS; Spot 42; polycistronic; translational inhibition

Mesh:

Substances:

Year:  2013        PMID: 23392245      PMCID: PMC3672274          DOI: 10.4161/rna.23696

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  42 in total

1.  Hfq: a bacterial Sm-like protein that mediates RNA-RNA interaction.

Authors:  Thorleif Møller; Thomas Franch; Peter Højrup; Douglas R Keene; Hans Peter Bächinger; Richard G Brennan; Poul Valentin-Hansen
Journal:  Mol Cell       Date:  2002-01       Impact factor: 17.970

2.  IscR, an Fe-S cluster-containing transcription factor, represses expression of Escherichia coli genes encoding Fe-S cluster assembly proteins.

Authors:  C J Schwartz; J L Giel; T Patschkowski; C Luther; F J Ruzicka; H Beinert; P J Kiley
Journal:  Proc Natl Acad Sci U S A       Date:  2001-12-11       Impact factor: 11.205

3.  A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli.

Authors:  Eric Massé; Susan Gottesman
Journal:  Proc Natl Acad Sci U S A       Date:  2002-03-26       Impact factor: 11.205

Review 4.  The bacterial Sm-like protein Hfq: a key player in RNA transactions.

Authors:  Poul Valentin-Hansen; Maiken Eriksen; Christina Udesen
Journal:  Mol Microbiol       Date:  2004-03       Impact factor: 3.501

5.  Functional assignment of the ORF2-iscS-iscU-iscA-hscB-hscA-fdx-ORF3 gene cluster involved in the assembly of Fe-S clusters in Escherichia coli.

Authors:  Y Takahashi; M Nakamura
Journal:  J Biochem       Date:  1999-11       Impact factor: 3.387

6.  A small, unstable RNA molecule of Escherichia coli: spot 42 RNA. I. Nucleotide sequence analysis.

Authors:  B G Sahagan; J E Dahlberg
Journal:  J Mol Biol       Date:  1979-07-05       Impact factor: 5.469

Review 7.  The Escherichia coli RNA degradosome: structure, function and relationship in other ribonucleolytic multienzyme complexes.

Authors:  A J Carpousis
Journal:  Biochem Soc Trans       Date:  2002-04       Impact factor: 5.407

8.  Genetic and phenotypic characterization of the RyhB regulon in Salmonella Typhimurium.

Authors:  Jeong Nam Kim; Young Min Kwon
Journal:  Microbiol Res       Date:  2012-07-21       Impact factor: 5.415

9.  Spot 42 RNA mediates discoordinate expression of the E. coli galactose operon.

Authors:  Thorleif Møller; Thomas Franch; Christina Udesen; Kenn Gerdes; Poul Valentin-Hansen
Journal:  Genes Dev       Date:  2002-07-01       Impact factor: 11.361

10.  Regulation of galactose operon expression: glucose effects and role of cyclic adenosine 3',5'-monophosphate.

Authors:  E Joseph; A Danchin; A Ullmann
Journal:  J Bacteriol       Date:  1981-04       Impact factor: 3.490

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  9 in total

1.  Global effects of the DEAD-box RNA helicase DeaD (CsdA) on gene expression over a broad range of temperatures.

Authors:  Christopher A Vakulskas; Archana Pannuri; Diana Cortés-Selva; Tesfalem R Zere; Brian M Ahmer; Paul Babitzke; Tony Romeo
Journal:  Mol Microbiol       Date:  2014-04-24       Impact factor: 3.501

2.  A small, microRNA-size, ribonucleic acid regulating gene expression and development of Shiga toxin-converting bacteriophage Φ24Β.

Authors:  Bożena Nejman-Faleńczyk; Sylwia Bloch; Katarzyna Licznerska; Aleksandra Dydecka; Agnieszka Felczykowska; Gracja Topka; Alicja Węgrzyn; Grzegorz Węgrzyn
Journal:  Sci Rep       Date:  2015-05-11       Impact factor: 4.379

3.  Effect of Shear Stress on Pseudomonas aeruginosa Isolated from the Cystic Fibrosis Lung.

Authors:  Jozef Dingemans; Pieter Monsieurs; Sung-Huan Yu; Aurélie Crabbé; Konrad U Förstner; Anne Malfroot; Pierre Cornelis; Rob Van Houdt
Journal:  MBio       Date:  2016-08-02       Impact factor: 7.867

4.  Identification and functional analysis of a bacteriocin, pyocin S6, with ribonuclease activity from a Pseudomonas aeruginosa cystic fibrosis clinical isolate.

Authors:  Jozef Dingemans; Maarten G K Ghequire; Michael Craggs; René De Mot; Pierre Cornelis
Journal:  Microbiologyopen       Date:  2016-02-09       Impact factor: 3.139

5.  Coordinated regulation of transcription by CcpA and the Staphylococcus aureus two-component system HptRS.

Authors:  Joseph M Reed; Sean Olson; Danielle F Brees; Caitlin E Griffin; Ryan A Grove; Paul J Davis; Stephen D Kachman; Jiri Adamec; Greg A Somerville
Journal:  PLoS One       Date:  2018-12-12       Impact factor: 3.240

6.  The Small Regulatory Antisense RNA PilR Affects Pilus Formation and Cell Motility by Negatively Regulating pilA11 in Synechocystis sp. PCC 6803.

Authors:  Jinlu Hu; Jiao Zhan; Hui Chen; Chenliu He; Huaixing Cang; Qiang Wang
Journal:  Front Microbiol       Date:  2018-04-23       Impact factor: 5.640

7.  The conserved 3' UTR-derived small RNA NarS mediates mRNA crossregulation during nitrate respiration.

Authors:  Chuan Wang; Yanjie Chao; Gianluca Matera; Qian Gao; Jörg Vogel
Journal:  Nucleic Acids Res       Date:  2020-02-28       Impact factor: 16.971

8.  A key antisense sRNA modulates the oxidative stress response and virulence in Xanthomonas oryzae pv. oryzicola.

Authors:  Yan Wu; Sai Wang; Wenhan Nie; Peihong Wang; Luoyi Fu; Iftikhar Ahmad; Bo Zhu; Gongyou Chen
Journal:  PLoS Pathog       Date:  2021-07-23       Impact factor: 6.823

9.  The RNA-binding protein Hfq assembles into foci-like structures in nitrogen starved Escherichia coli.

Authors:  Josh McQuail; Amy Switzer; Lynn Burchell; Sivaramesh Wigneshweraraj
Journal:  J Biol Chem       Date:  2020-06-12       Impact factor: 5.157

  9 in total

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