Literature DB >> 27344651

Cyanobacterial ultrastructure in light of genomic sequence data.

C R Gonzalez-Esquer1, J Smarda2, R Rippka3, S D Axen4, G Guglielmi5, M Gugger3, C A Kerfeld6,7,8,9,10.   

Abstract

Cyanobacteria are physiologically and morphologically diverse photosynthetic microbes that play major roles in the carbon and nitrogen cycles of the biosphere. Recently, they have gained attention as potential platforms for the production of biofuels and other renewable chemicals. Many cyanobacteria were characterized morphologically prior to the advent of genome sequencing. Here, we catalog cyanobacterial ultrastructure within the context of genomic sequence information, including high-magnification transmission electron micrographs that represent the diversity in cyanobacterial morphology. We place the image data in the context of tabulated protein domains-which are the structural, functional, and evolutionary units of proteins-from the 126 cyanobacterial genomes comprising the CyanoGEBA dataset. In particular, we identify the correspondence between ultrastructure and the occurrence of genes encoding protein domains related to the formation of cyanobacterial inclusions. This compilation of images and genome-level domain occurrence will prove useful for a variety of analyses of cyanobacterial sequence data and provides a guidebook to morphological features.

Entities:  

Keywords:  Bioinformatics; Carboxysome; Cyanobacteria; Cyanophycin; Gas vesicles; Glycogen; Lipid droplets; Morphology; PHB; Polyphosphate; Protein domain; Transmission electron microscopy; Ultrastructure

Mesh:

Substances:

Year:  2016        PMID: 27344651     DOI: 10.1007/s11120-016-0286-2

Source DB:  PubMed          Journal:  Photosynth Res        ISSN: 0166-8595            Impact factor:   3.573


  35 in total

Review 1.  Structure, function and evolution of multidomain proteins.

Authors:  Christine Vogel; Matthew Bashton; Nicola D Kerrison; Cyrus Chothia; Sarah A Teichmann
Journal:  Curr Opin Struct Biol       Date:  2004-04       Impact factor: 6.809

2.  Cryo-electron tomography reveals the comparative three-dimensional architecture of Prochlorococcus, a globally important marine cyanobacterium.

Authors:  Claire S Ting; Chyongere Hsieh; Sesh Sundararaman; Carmen Mannella; Michael Marko
Journal:  J Bacteriol       Date:  2007-04-20       Impact factor: 3.490

3.  Composition and occurrence of lipid droplets in the cyanobacterium Nostoc punctiforme.

Authors:  Anantha Peramuna; Michael L Summers
Journal:  Arch Microbiol       Date:  2014-08-19       Impact factor: 2.552

Review 4.  The fine structure of blue-green algae.

Authors:  N J Lang
Journal:  Annu Rev Microbiol       Date:  1968       Impact factor: 15.500

5.  Polyhydroxybutyrate particles in Synechocystis sp. PCC 6803: facts and fiction.

Authors:  Tin Ki Tsang; Robert W Roberson; Wim F J Vermaas
Journal:  Photosynth Res       Date:  2013-09-20       Impact factor: 3.573

Review 6.  Cyanobacterial cell inclusions.

Authors:  M M Allen
Journal:  Annu Rev Microbiol       Date:  1984       Impact factor: 15.500

7.  Intracellular Ca-carbonate biomineralization is widespread in cyanobacteria.

Authors:  Karim Benzerara; Feriel Skouri-Panet; Jinhua Li; Céline Férard; Muriel Gugger; Thierry Laurent; Estelle Couradeau; Marie Ragon; Julie Cosmidis; Nicolas Menguy; Isabel Margaret-Oliver; Rosaluz Tavera; Purificación López-García; David Moreira
Journal:  Proc Natl Acad Sci U S A       Date:  2014-07-09       Impact factor: 11.205

8.  The origin of multicellularity in cyanobacteria.

Authors:  Bettina E Schirrmeister; Alexandre Antonelli; Homayoun C Bagheri
Journal:  BMC Evol Biol       Date:  2011-02-14       Impact factor: 3.260

Review 9.  Genomics and chloroplast evolution: what did cyanobacteria do for plants?

Authors:  John A Raven; John F Allen
Journal:  Genome Biol       Date:  2003-03-03       Impact factor: 13.583

10.  Cyanobacteria and the Great Oxidation Event: evidence from genes and fossils.

Authors:  Bettina E Schirrmeister; Muriel Gugger; Philip C J Donoghue
Journal:  Palaeontology       Date:  2015-06-23       Impact factor: 4.073

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  12 in total

1.  A bioarchitectonic approach to the modular engineering of metabolism.

Authors:  Cheryl A Kerfeld
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2017-09-26       Impact factor: 6.237

Review 2.  Fischerella thermalis: a model organism to study thermophilic diazotrophy, photosynthesis and multicellularity in cyanobacteria.

Authors:  Jaime Alcorta; Pablo Vergara-Barros; Laura A Antonaru; María E Alcamán-Arias; Dennis J Nürnberg; Beatriz Díez
Journal:  Extremophiles       Date:  2019-09-11       Impact factor: 2.395

3.  Emendation of the Coccoid Cyanobacterial Genus Gloeocapsopsis and Description of the New Species Gloeocapsopsis diffluens sp. nov. and Gloeocapsopsis dulcis sp. nov. Isolated From the Coastal Range of the Atacama Desert (Chile).

Authors:  Patrick Jung; Armando Azua-Bustos; Carlos Gonzalez-Silva; Tatiana Mikhailyuk; Daniel Zabicki; Andreas Holzinger; Michael Lakatos; Burkhard Büdel
Journal:  Front Microbiol       Date:  2021-07-08       Impact factor: 5.640

Review 4.  A Metagenomic Approach to Cyanobacterial Genomics.

Authors:  Danillo O Alvarenga; Marli F Fiore; Alessandro M Varani
Journal:  Front Microbiol       Date:  2017-05-09       Impact factor: 5.640

5.  β-Carboxysome bioinformatics: identification and evolution of new bacterial microcompartment protein gene classes and core locus constraints.

Authors:  Manuel Sommer; Fei Cai; Matthew Melnicki; Cheryl A Kerfeld
Journal:  J Exp Bot       Date:  2017-06-01       Impact factor: 6.992

6.  A constrained SSU-rRNA phylogeny reveals the unsequenced diversity of photosynthetic Cyanobacteria (Oxyphotobacteria).

Authors:  Luc Cornet; Annick Wilmotte; Emmanuelle J Javaux; Denis Baurain
Journal:  BMC Res Notes       Date:  2018-07-03

Review 7.  Recent Advances in the Photoautotrophic Metabolism of Cyanobacteria: Biotechnological Implications.

Authors:  Théo Veaudor; Victoire Blanc-Garin; Célia Chenebault; Encarnación Diaz-Santos; Jean-François Sassi; Corinne Cassier-Chauvat; Franck Chauvat
Journal:  Life (Basel)       Date:  2020-05-19

8.  Amorphous Calcium Carbonate Granules Form Within an Intracellular Compartment in Calcifying Cyanobacteria.

Authors:  Marine Blondeau; Martin Sachse; Claire Boulogne; Cynthia Gillet; Jean-Michel Guigner; Fériel Skouri-Panet; Mélanie Poinsot; Céline Ferard; Jennyfer Miot; Karim Benzerara
Journal:  Front Microbiol       Date:  2018-08-06       Impact factor: 5.640

9.  Evolutionary Patterns of Thylakoid Architecture in Cyanobacteria.

Authors:  Jan Mareš; Otakar Strunecký; Lenka Bučinská; Jana Wiedermannová
Journal:  Front Microbiol       Date:  2019-02-22       Impact factor: 5.640

10.  Single colony genetic analysis of epilithic stream algae of the genus Chamaesiphon spp.

Authors:  Rainer Kurmayer; Guntram Christiansen; Andreas Holzinger; Eugen Rott
Journal:  Hydrobiologia       Date:  2017-08-21       Impact factor: 2.694

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