Literature DB >> 21837209

10α-Hy-droxy-4,9-dimethyl-13-[(pyrrol-idin-1-yl)meth-yl]-3,8,15-trioxatetra-cyclo-[10.3.0.0.0]penta-decan-14-one.

Mohamed Moumou, Ahmed Benharref, Moha Berraho, Daniel Avignant, Abdelghani Oudahmane, Mohamed Akssira.   

Abstract

The title compound, C(19)H(29)NO(5), was synthesized from 9α-hy-droxy-parthenolide (9α-hy-droxy-4,8-dimethyl-12-methyl-ene-3,14-dioxatricyclo-[9.3.0.0(2,4)]tetra-dec-7-en-13-one), which was isolated from the chloro-form extract of the aerial parts of Anvillea radiata. The mol-ecule is built up from two fused five- and ten-membered rings with the (pyrrolidin-4-yl)methyl group as a substituent. The two five-membered ring display the same envelope conformations, whereas the ten-membered ring adopts an approximate chair-chair conformation. The dihedral angle between the ten-membered ring and the lactone ring is 21.81 (9)°. An intra-molecular O-H⋯N hydrogen bond stabilizes the mol-ecular conformation. In the crystal, inter-molecular C-H⋯O inter-actions link the mol-ecules into chains parallel to the c axis.

Entities:  

Year:  2011        PMID: 21837209      PMCID: PMC3151905          DOI: 10.1107/S1600536811024688

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the medicinal uses of the plant Anvillea radiata, see: El Hassany et al. (2004 ▶). For reactivity of this sesquiterpene see: Der-Ren et al. (2006 ▶); Neelakantan et al. (2009 ▶); Neukirch et al. (2003 ▶). For ring puckering parameters, see: Cremer & Pople (1975 ▶). For conformations of ten-membered rings, see: Castaneda-Acosta et al. (1997 ▶). For related structures, see: Moumou et al. (2010 ▶); Watson & Zabel (1982 ▶).

Experimental

Crystal data

C19H29NO5 M = 351.43 Orthorhombic, a = 8.0714 (2) Å b = 10.4571 (3) Å c = 21.5816 (8) Å V = 1821.56 (10) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 298 K 0.89 × 0.46 × 0.21 mm

Data collection

Bruker APEXII CCD area-detector diffractometer 8707 measured reflections 2122 independent reflections 1660 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.098 S = 1.03 2122 reflections 229 parameters H-atom parameters constrained Δρmax = 0.17 e Å−3 Δρmin = −0.15 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: APEX2 and SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811024688/om2443sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811024688/om2443Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811024688/om2443Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H29NO5F(000) = 760
Mr = 351.43Dx = 1.281 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 3417 reflections
a = 8.0714 (2) Åθ = 2.7–26.4°
b = 10.4571 (3) ŵ = 0.09 mm1
c = 21.5816 (8) ÅT = 298 K
V = 1821.56 (10) Å3Prism, colourless
Z = 40.89 × 0.46 × 0.21 mm
Bruker APEXII CCD area-detector diffractometer1660 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.034
graphiteθmax = 26.4°, θmin = 2.7°
φ and ω scansh = −7→10
8707 measured reflectionsk = −13→10
2122 independent reflectionsl = −26→25
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.098H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0589P)2] where P = (Fo2 + 2Fc2)/3
2122 reflections(Δ/σ)max < 0.001
229 parametersΔρmax = 0.17 e Å3
0 restraintsΔρmin = −0.15 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
xyzUiso*/Ueq
C10.2294 (3)0.5169 (2)0.08783 (11)0.0361 (6)
H10.18510.59450.06850.043*
C20.3205 (3)0.5410 (2)0.14572 (11)0.0399 (6)
C30.3293 (3)0.6785 (2)0.16551 (12)0.0483 (7)
H3A0.33540.68200.21040.058*
H3B0.22800.72120.15300.058*
C40.4776 (3)0.7513 (3)0.13836 (13)0.0491 (7)
H4A0.45730.84230.14240.059*
H4B0.57540.73110.16260.059*
C50.5120 (3)0.7213 (2)0.07148 (12)0.0377 (6)
H50.41290.71130.04570.045*
C60.6598 (3)0.6526 (2)0.04855 (11)0.0361 (5)
C70.6555 (3)0.5740 (2)−0.01081 (10)0.0336 (5)
H70.77000.5517−0.02140.040*
C80.5592 (3)0.4481 (2)−0.00134 (11)0.0351 (5)
H8A0.60270.3845−0.02970.042*
H8B0.57920.41770.04050.042*
C90.3708 (3)0.4590 (2)−0.01138 (10)0.0325 (5)
H90.34540.5497−0.01790.039*
C100.2637 (3)0.4126 (2)0.04320 (12)0.0367 (6)
H100.31460.33890.06390.044*
C110.2981 (3)0.3852 (2)−0.06591 (12)0.0410 (6)
H110.35230.3016−0.06850.049*
C120.1199 (3)0.3663 (2)−0.04627 (14)0.0491 (7)
C130.7995 (3)0.6124 (3)0.09028 (13)0.0549 (8)
H13A0.90320.63630.07180.082*
H13B0.79630.52140.09590.082*
H13C0.78810.65390.12970.082*
C140.4501 (3)0.4522 (3)0.17126 (13)0.0557 (7)
H14A0.44310.45090.21570.084*
H14B0.55800.48140.15900.084*
H14C0.43210.36750.15540.084*
C150.3068 (3)0.4494 (3)−0.12859 (12)0.0469 (6)
H15A0.24800.3971−0.15850.056*
H15B0.25060.5312−0.12620.056*
C160.5619 (4)0.3520 (3)−0.16867 (15)0.0686 (9)
H16A0.48840.2950−0.19100.082*
H16B0.60430.3079−0.13240.082*
C170.7000 (5)0.3955 (4)−0.2091 (2)0.0935 (13)
H17A0.72180.3332−0.24140.112*
H17B0.80030.4078−0.18510.112*
C180.6423 (4)0.5219 (3)−0.23718 (14)0.0664 (9)
H18A0.72100.5895−0.22830.080*
H18B0.63010.5143−0.28170.080*
C190.4779 (4)0.5494 (3)−0.20714 (12)0.0553 (7)
H19A0.46860.6394−0.19680.066*
H19B0.38750.5265−0.23460.066*
N0.4750 (3)0.47021 (19)−0.15073 (9)0.0435 (5)
O10.1047 (2)0.37802 (16)0.01525 (9)0.0474 (5)
O20.0011 (3)0.3449 (2)−0.07852 (11)0.0696 (6)
O30.5907 (2)0.64734 (16)−0.06008 (8)0.0415 (4)
H30.56560.5999−0.08880.062*
O40.6462 (2)0.78993 (16)0.04219 (8)0.0460 (5)
O50.1545 (2)0.48703 (17)0.14653 (8)0.0503 (5)
U11U22U33U12U13U23
C10.0278 (11)0.0437 (13)0.0369 (13)−0.0005 (11)0.0061 (10)0.0094 (10)
C20.0353 (13)0.0507 (14)0.0338 (13)−0.0003 (12)0.0068 (10)0.0073 (12)
C30.0521 (15)0.0586 (16)0.0340 (14)0.0070 (13)0.0051 (12)−0.0027 (12)
C40.0538 (16)0.0513 (15)0.0423 (16)−0.0036 (13)0.0025 (13)−0.0083 (12)
C50.0378 (13)0.0365 (12)0.0389 (14)−0.0073 (12)0.0015 (11)0.0009 (11)
C60.0270 (11)0.0401 (13)0.0411 (14)−0.0065 (11)−0.0007 (10)0.0050 (11)
C70.0269 (11)0.0398 (12)0.0341 (13)0.0029 (11)0.0037 (10)0.0065 (10)
C80.0352 (12)0.0341 (11)0.0359 (13)0.0025 (11)0.0024 (10)0.0030 (10)
C90.0337 (11)0.0284 (10)0.0354 (12)0.0000 (10)−0.0004 (10)0.0027 (10)
C100.0304 (12)0.0348 (12)0.0450 (15)−0.0028 (10)−0.0001 (11)0.0096 (11)
C110.0444 (14)0.0343 (12)0.0442 (15)0.0005 (12)−0.0029 (12)−0.0032 (11)
C120.0517 (17)0.0366 (13)0.0591 (19)−0.0096 (14)−0.0047 (15)0.0015 (13)
C130.0385 (15)0.077 (2)0.0487 (17)−0.0019 (14)−0.0071 (13)0.0033 (14)
C140.0566 (16)0.0671 (17)0.0434 (16)0.0044 (16)−0.0038 (13)0.0116 (15)
C150.0485 (15)0.0516 (14)0.0405 (15)0.0041 (14)−0.0047 (12)−0.0067 (12)
C160.079 (2)0.0623 (18)0.064 (2)0.0231 (18)0.0107 (19)−0.0128 (16)
C170.083 (3)0.116 (3)0.082 (3)0.026 (2)0.027 (2)−0.008 (2)
C180.070 (2)0.081 (2)0.0476 (18)−0.0066 (19)0.0082 (16)−0.0081 (16)
C190.0636 (17)0.0695 (18)0.0327 (14)0.0029 (17)−0.0035 (13)−0.0014 (14)
N0.0512 (13)0.0459 (12)0.0333 (11)0.0082 (11)−0.0027 (10)−0.0041 (9)
O10.0366 (10)0.0480 (10)0.0576 (12)−0.0131 (8)0.0013 (9)0.0040 (9)
O20.0568 (13)0.0737 (14)0.0784 (16)−0.0238 (12)−0.0205 (12)−0.0018 (12)
O30.0507 (10)0.0409 (8)0.0327 (10)−0.0062 (9)−0.0004 (8)0.0074 (7)
O40.0488 (10)0.0406 (9)0.0485 (11)−0.0146 (8)0.0053 (9)0.0000 (8)
O50.0399 (9)0.0666 (12)0.0445 (11)−0.0044 (9)0.0147 (8)0.0106 (9)
C1—O51.438 (3)C10—H100.9800
C1—C21.472 (3)C11—C151.512 (4)
C1—C101.481 (3)C11—C121.512 (4)
C1—H10.9800C11—H110.9800
C2—O51.454 (3)C12—O21.206 (3)
C2—C31.501 (4)C12—O11.339 (3)
C2—C141.504 (4)C13—H13A0.9600
C3—C41.535 (4)C13—H13B0.9600
C3—H3A0.9700C13—H13C0.9600
C3—H3B0.9700C14—H14A0.9600
C4—C51.503 (4)C14—H14B0.9600
C4—H4A0.9700C14—H14C0.9600
C4—H4B0.9700C15—N1.455 (3)
C5—O41.445 (3)C15—H15A0.9700
C5—C61.478 (3)C15—H15B0.9700
C5—H50.9800C16—N1.473 (3)
C6—O41.446 (3)C16—C171.487 (5)
C6—C131.503 (3)C16—H16A0.9700
C6—C71.523 (3)C16—H16B0.9700
C7—O31.412 (3)C17—C181.526 (5)
C7—C81.543 (3)C17—H17A0.9700
C7—H70.9800C17—H17B0.9700
C8—C91.540 (3)C18—C191.504 (4)
C8—H8A0.9700C18—H18A0.9700
C8—H8B0.9700C18—H18B0.9700
C9—C111.525 (3)C19—N1.473 (3)
C9—C101.540 (3)C19—H19A0.9700
C9—H90.9800C19—H19B0.9700
C10—O11.464 (3)O3—H30.8200
O5—C1—C259.96 (15)C9—C10—H10111.2
O5—C1—C10119.5 (2)C15—C11—C12110.7 (2)
C2—C1—C10125.8 (2)C15—C11—C9116.62 (19)
O5—C1—H1113.7C12—C11—C9102.5 (2)
C2—C1—H1113.7C15—C11—H11108.9
C10—C1—H1113.7C12—C11—H11108.9
O5—C2—C158.87 (15)C9—C11—H11108.9
O5—C2—C3114.3 (2)O2—C12—O1121.1 (3)
C1—C2—C3115.4 (2)O2—C12—C11128.2 (3)
O5—C2—C14113.4 (2)O1—C12—C11110.7 (2)
C1—C2—C14123.6 (2)C6—C13—H13A109.5
C3—C2—C14117.0 (2)C6—C13—H13B109.5
C2—C3—C4113.8 (2)H13A—C13—H13B109.5
C2—C3—H3A108.8C6—C13—H13C109.5
C4—C3—H3A108.8H13A—C13—H13C109.5
C2—C3—H3B108.8H13B—C13—H13C109.5
C4—C3—H3B108.8C2—C14—H14A109.5
H3A—C3—H3B107.7C2—C14—H14B109.5
C5—C4—C3114.0 (2)H14A—C14—H14B109.5
C5—C4—H4A108.7C2—C14—H14C109.5
C3—C4—H4A108.7H14A—C14—H14C109.5
C5—C4—H4B108.7H14B—C14—H14C109.5
C3—C4—H4B108.7N—C15—C11113.8 (2)
H4A—C4—H4B107.6N—C15—H15A108.8
O4—C5—C659.31 (14)C11—C15—H15A108.8
O4—C5—C4117.1 (2)N—C15—H15B108.8
C6—C5—C4124.9 (2)C11—C15—H15B108.8
O4—C5—H5114.6H15A—C15—H15B107.7
C6—C5—H5114.6N—C16—C17104.8 (3)
C4—C5—H5114.6N—C16—H16A110.8
O4—C6—C559.20 (15)C17—C16—H16A110.8
O4—C6—C13113.1 (2)N—C16—H16B110.8
C5—C6—C13122.7 (2)C17—C16—H16B110.8
O4—C6—C7117.0 (2)H16A—C16—H16B108.9
C5—C6—C7121.7 (2)C16—C17—C18105.6 (3)
C13—C6—C7111.7 (2)C16—C17—H17A110.6
O3—C7—C6110.42 (18)C18—C17—H17A110.6
O3—C7—C8112.11 (19)C16—C17—H17B110.6
C6—C7—C8111.14 (18)C18—C17—H17B110.6
O3—C7—H7107.7H17A—C17—H17B108.7
C6—C7—H7107.7C19—C18—C17105.3 (3)
C8—C7—H7107.7C19—C18—H18A110.7
C9—C8—C7114.57 (19)C17—C18—H18A110.7
C9—C8—H8A108.6C19—C18—H18B110.7
C7—C8—H8A108.6C17—C18—H18B110.7
C9—C8—H8B108.6H18A—C18—H18B108.8
C7—C8—H8B108.6N—C19—C18105.2 (2)
H8A—C8—H8B107.6N—C19—H19A110.7
C11—C9—C10102.40 (17)C18—C19—H19A110.7
C11—C9—C8116.8 (2)N—C19—H19B110.7
C10—C9—C8115.03 (19)C18—C19—H19B110.7
C11—C9—H9107.3H19A—C19—H19B108.8
C10—C9—H9107.3C15—N—C19111.7 (2)
C8—C9—H9107.3C15—N—C16113.9 (2)
O1—C10—C1106.59 (19)C19—N—C16104.3 (2)
O1—C10—C9104.76 (18)C12—O1—C10110.54 (19)
C1—C10—C9111.73 (18)C7—O3—H3109.5
O1—C10—H10111.2C5—O4—C661.49 (14)
C1—C10—H10111.2C1—O5—C261.17 (15)
D—H···AD—HH···AD···AD—H···A
O3—H3···N0.822.042.851 (2)172
C9—H9···O4i0.982.383.260 (2)149
C10—H10···O2ii0.982.463.392 (3)158
C19—H19B···O5iii0.972.593.357 (3)136
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3⋯N0.822.042.851 (2)172
C9—H9⋯O4i0.982.383.260 (2)149
C10—H10⋯O2ii0.982.463.392 (3)158
C19—H19B⋯O5iii0.972.593.357 (3)136

Symmetry codes: (i) ; (ii) ; (iii) .

  7 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Parthenolide and its photochemically synthesized 1(10)Z isomer: chemical reactivity and structure-activity relationship studies in human leucocyte chemotaxis.

Authors:  Hannes Neukirch; Nicole C Kaneider; Christian J Wiedermann; Antonio Guerriero; Michele D'Ambrosio
Journal:  Bioorg Med Chem       Date:  2003-04-03       Impact factor: 3.641

3.  Synthesis and anti-viral activity of a series of sesquiterpene lactones and analogues in the subgenomic HCV replicon system.

Authors:  Der-Ren Hwang; Yu-Shan Wu; Chun-Wei Chang; Tzu-Wen Lien; Wei-Cheng Chen; Uan-Kang Tan; John T A Hsu; Hsing-Pang Hsieh
Journal:  Bioorg Med Chem       Date:  2005-09-02       Impact factor: 3.641

4.  Germacranolides from Anvillea radiata.

Authors:  B El Hassany; F El Hanbali; M Akssira; F Mellouki; A Haidour; A F Barrero
Journal:  Fitoterapia       Date:  2004-09       Impact factor: 2.882

5.  Aminoparthenolides as novel anti-leukemic agents: Discovery of the NF-kappaB inhibitor, DMAPT (LC-1).

Authors:  Sundar Neelakantan; Shama Nasim; Monica L Guzman; Craig T Jordan; Peter A Crooks
Journal:  Bioorg Med Chem Lett       Date:  2009-05-27       Impact factor: 2.823

6.  9β-Hy-droxy-1β,10α-ep-oxy-parthenolide.

Authors:  Mohamed Moumou; Mohamed Akssira; Lahcen El Ammari; Ahmed Benharref; Moha Berraho
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-25

7.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.