| Literature DB >> 21837182 |
Hoong-Kun Fun, Wisanu Maneerat, Surat Laphookhieo, Suchada Chantrapromma.
Abstract
THE TITLE COMPOUND KNOWN AS GLYCOZOLIDAL (SYSTEMATIC NAME: 2,7-dimeth-oxy-9H-carbazole-3-carbaldehyde), C(15)H(13)NO(3), is a naturally occurring carbazole, which was isolated from the roots of Clausena lansium. The carbazole ring system is essentially planar, with an r.m.s. deviation of 0.0093 (1) Å. In the crystal, inter-molecular N-H⋯O hydrogen bonds connect the mol-ecules into a chain along the c axis. C-H⋯O, C-H⋯π and π-π inter-actions, with centroid-centroid distances of 3.5924 (6), 3.6576 (6) and 3.8613 (6) Å, are also observed.Entities:
Year: 2011 PMID: 21837182 PMCID: PMC3151865 DOI: 10.1107/S1600536811024160
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C15H13NO3 | |
| Monoclinic, | Melting point = 469.6–470.7 K |
| Hall symbol: -C 2yc | Mo |
| Cell parameters from 3381 reflections | |
| θ = 2.0–30.0° | |
| µ = 0.10 mm−1 | |
| β = 98.871 (1)° | |
| Block, yellow | |
| 0.53 × 0.42 × 0.16 mm |
| Bruker APEXII CCD area-detector diffractometer | 3381 independent reflections |
| Radiation source: sealed tube | 3032 reflections with |
| graphite | |
| φ and ω scans | θmax = 30.0°, θmin = 2.0° |
| Absorption correction: multi-scan ( | |
| 13003 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3381 reflections | (Δ/σ)max = 0.001 |
| 178 parameters | Δρmax = 0.45 e Å−3 |
| 0 restraints | Δρmin = −0.24 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 120.0 (1) K. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.06869 (4) | 0.45177 (10) | 0.60778 (5) | 0.01915 (17) | |
| O2 | 0.01915 (4) | 0.13634 (10) | 0.39162 (6) | 0.02408 (18) | |
| O3 | 0.34527 (3) | 0.26588 (9) | 0.16940 (5) | 0.01588 (16) | |
| N1 | 0.27840 (4) | 0.55708 (10) | 0.49606 (6) | 0.01503 (17) | |
| H1N1 | 0.2977 (8) | 0.626 (2) | 0.5410 (12) | 0.031 (4)* | |
| C1 | 0.17456 (5) | 0.51795 (12) | 0.56255 (7) | 0.01507 (18) | |
| H1A | 0.1855 | 0.5922 | 0.6148 | 0.018* | |
| C2 | 0.11513 (5) | 0.43366 (12) | 0.54868 (7) | 0.01486 (19) | |
| C3 | 0.09900 (5) | 0.32215 (12) | 0.47030 (7) | 0.01479 (18) | |
| C4 | 0.14322 (5) | 0.29659 (12) | 0.40535 (7) | 0.01420 (18) | |
| H4A | 0.1325 | 0.2221 | 0.3532 | 0.017* | |
| C5 | 0.27380 (4) | 0.30870 (12) | 0.28279 (7) | 0.01392 (18) | |
| H5A | 0.2440 | 0.2330 | 0.2479 | 0.017* | |
| C6 | 0.33378 (5) | 0.34504 (12) | 0.25284 (7) | 0.01366 (18) | |
| C7 | 0.37905 (5) | 0.45348 (12) | 0.30457 (7) | 0.01510 (18) | |
| H7A | 0.4196 | 0.4759 | 0.2826 | 0.018* | |
| C8 | 0.36473 (5) | 0.52877 (12) | 0.38837 (7) | 0.01506 (19) | |
| H8A | 0.3955 | 0.6003 | 0.4248 | 0.018* | |
| C9 | 0.30431 (5) | 0.49645 (12) | 0.41708 (7) | 0.01365 (18) | |
| C10 | 0.25861 (4) | 0.38624 (11) | 0.36532 (6) | 0.01310 (18) | |
| C11 | 0.20281 (4) | 0.38018 (11) | 0.41712 (6) | 0.01329 (18) | |
| C12 | 0.21752 (4) | 0.48914 (11) | 0.49667 (7) | 0.01357 (18) | |
| C13 | 0.08690 (5) | 0.55135 (13) | 0.69203 (7) | 0.0199 (2) | |
| H13A | 0.0510 | 0.5519 | 0.7305 | 0.030* | |
| H13B | 0.0955 | 0.6641 | 0.6726 | 0.030* | |
| H13C | 0.1266 | 0.5061 | 0.7306 | 0.030* | |
| C14 | 0.03699 (5) | 0.23074 (13) | 0.45831 (8) | 0.0192 (2) | |
| H14A | 0.0089 | 0.2457 | 0.5053 | 0.023* | |
| C15 | 0.41126 (5) | 0.27000 (14) | 0.14839 (8) | 0.0200 (2) | |
| H15A | 0.4153 | 0.1932 | 0.0958 | 0.030* | |
| H15B | 0.4419 | 0.2380 | 0.2059 | 0.030* | |
| H15C | 0.4217 | 0.3816 | 0.1291 | 0.030* |
| O1 | 0.0164 (3) | 0.0238 (4) | 0.0186 (4) | −0.0010 (3) | 0.0070 (3) | −0.0029 (3) |
| O2 | 0.0178 (4) | 0.0251 (4) | 0.0294 (4) | −0.0050 (3) | 0.0038 (3) | −0.0061 (3) |
| O3 | 0.0146 (3) | 0.0201 (3) | 0.0135 (3) | 0.0005 (2) | 0.0042 (2) | −0.0016 (2) |
| N1 | 0.0141 (4) | 0.0167 (4) | 0.0145 (4) | −0.0030 (3) | 0.0028 (3) | −0.0026 (3) |
| C1 | 0.0157 (4) | 0.0159 (4) | 0.0137 (4) | −0.0003 (3) | 0.0025 (3) | −0.0008 (3) |
| C2 | 0.0142 (4) | 0.0162 (4) | 0.0147 (4) | 0.0011 (3) | 0.0039 (3) | 0.0015 (3) |
| C3 | 0.0135 (4) | 0.0156 (4) | 0.0154 (4) | −0.0007 (3) | 0.0025 (3) | 0.0012 (3) |
| C4 | 0.0144 (4) | 0.0145 (4) | 0.0136 (4) | −0.0010 (3) | 0.0017 (3) | 0.0007 (3) |
| C5 | 0.0139 (4) | 0.0143 (4) | 0.0134 (4) | −0.0007 (3) | 0.0018 (3) | 0.0004 (3) |
| C6 | 0.0149 (4) | 0.0145 (4) | 0.0118 (4) | 0.0013 (3) | 0.0029 (3) | 0.0010 (3) |
| C7 | 0.0133 (4) | 0.0164 (4) | 0.0157 (4) | −0.0014 (3) | 0.0029 (3) | 0.0016 (3) |
| C8 | 0.0143 (4) | 0.0156 (4) | 0.0152 (4) | −0.0026 (3) | 0.0021 (3) | 0.0004 (3) |
| C9 | 0.0138 (4) | 0.0137 (4) | 0.0133 (4) | −0.0004 (3) | 0.0018 (3) | 0.0006 (3) |
| C10 | 0.0129 (4) | 0.0138 (4) | 0.0127 (4) | −0.0006 (3) | 0.0021 (3) | 0.0014 (3) |
| C11 | 0.0134 (4) | 0.0143 (4) | 0.0123 (4) | −0.0004 (3) | 0.0024 (3) | 0.0008 (3) |
| C12 | 0.0132 (4) | 0.0140 (4) | 0.0133 (4) | −0.0003 (3) | 0.0015 (3) | 0.0012 (3) |
| C13 | 0.0226 (5) | 0.0206 (5) | 0.0178 (5) | 0.0012 (4) | 0.0074 (4) | −0.0015 (4) |
| C14 | 0.0143 (4) | 0.0206 (5) | 0.0232 (5) | −0.0019 (3) | 0.0047 (3) | −0.0002 (4) |
| C15 | 0.0166 (4) | 0.0243 (5) | 0.0204 (5) | −0.0012 (4) | 0.0073 (4) | −0.0016 (4) |
| O1—C2 | 1.3667 (11) | C5—C10 | 1.3962 (13) |
| O1—C13 | 1.4347 (13) | C5—H5A | 0.9500 |
| O2—C14 | 1.2225 (13) | C6—C7 | 1.4013 (13) |
| O3—C6 | 1.3887 (11) | C7—C8 | 1.3975 (13) |
| O3—C15 | 1.4337 (11) | C7—H7A | 0.9500 |
| N1—C12 | 1.3702 (11) | C8—C9 | 1.3896 (13) |
| N1—C9 | 1.3927 (12) | C8—H8A | 0.9500 |
| N1—H1N1 | 0.890 (17) | C9—C10 | 1.4158 (13) |
| C1—C2 | 1.3890 (13) | C10—C11 | 1.4516 (12) |
| C1—C12 | 1.3944 (13) | C11—C12 | 1.4212 (13) |
| C1—H1A | 0.9500 | C13—H13A | 0.9800 |
| C2—C3 | 1.4250 (13) | C13—H13B | 0.9800 |
| C3—C4 | 1.3995 (13) | C13—H13C | 0.9800 |
| C3—C14 | 1.4637 (13) | C14—H14A | 0.9500 |
| C4—C11 | 1.3892 (13) | C15—H15A | 0.9800 |
| C4—H4A | 0.9500 | C15—H15B | 0.9800 |
| C5—C6 | 1.3954 (12) | C15—H15C | 0.9800 |
| C2—O1—C13 | 116.31 (8) | C7—C8—H8A | 120.8 |
| C6—O3—C15 | 116.91 (8) | C8—C9—N1 | 129.31 (9) |
| C12—N1—C9 | 108.96 (8) | C8—C9—C10 | 121.59 (9) |
| C12—N1—H1N1 | 123.8 (11) | N1—C9—C10 | 109.10 (8) |
| C9—N1—H1N1 | 127.2 (11) | C5—C10—C9 | 119.72 (8) |
| C2—C1—C12 | 117.29 (9) | C5—C10—C11 | 134.11 (8) |
| C2—C1—H1A | 121.4 | C9—C10—C11 | 106.16 (8) |
| C12—C1—H1A | 121.4 | C4—C11—C12 | 118.40 (8) |
| O1—C2—C1 | 122.99 (9) | C4—C11—C10 | 135.13 (9) |
| O1—C2—C3 | 115.86 (8) | C12—C11—C10 | 106.47 (8) |
| C1—C2—C3 | 121.15 (9) | N1—C12—C1 | 127.59 (9) |
| C4—C3—C2 | 120.03 (9) | N1—C12—C11 | 109.30 (8) |
| C4—C3—C14 | 119.50 (9) | C1—C12—C11 | 123.10 (9) |
| C2—C3—C14 | 120.45 (9) | O1—C13—H13A | 109.5 |
| C11—C4—C3 | 120.02 (9) | O1—C13—H13B | 109.5 |
| C11—C4—H4A | 120.0 | H13A—C13—H13B | 109.5 |
| C3—C4—H4A | 120.0 | O1—C13—H13C | 109.5 |
| C6—C5—C10 | 118.43 (8) | H13A—C13—H13C | 109.5 |
| C6—C5—H5A | 120.8 | H13B—C13—H13C | 109.5 |
| C10—C5—H5A | 120.8 | O2—C14—C3 | 124.07 (10) |
| O3—C6—C5 | 115.45 (8) | O2—C14—H14A | 118.0 |
| O3—C6—C7 | 122.88 (8) | C3—C14—H14A | 118.0 |
| C5—C6—C7 | 121.67 (9) | O3—C15—H15A | 109.5 |
| C8—C7—C6 | 120.15 (8) | O3—C15—H15B | 109.5 |
| C8—C7—H7A | 119.9 | H15A—C15—H15B | 109.5 |
| C6—C7—H7A | 119.9 | O3—C15—H15C | 109.5 |
| C9—C8—C7 | 118.40 (9) | H15A—C15—H15C | 109.5 |
| C9—C8—H8A | 120.8 | H15B—C15—H15C | 109.5 |
| C13—O1—C2—C1 | −6.03 (14) | C6—C5—C10—C11 | 179.98 (10) |
| C13—O1—C2—C3 | 174.23 (8) | C8—C9—C10—C5 | −0.65 (14) |
| C12—C1—C2—O1 | −179.61 (9) | N1—C9—C10—C5 | −179.76 (8) |
| C12—C1—C2—C3 | 0.12 (14) | C8—C9—C10—C11 | 178.56 (9) |
| O1—C2—C3—C4 | 179.41 (8) | N1—C9—C10—C11 | −0.55 (10) |
| C1—C2—C3—C4 | −0.33 (14) | C3—C4—C11—C12 | 0.77 (14) |
| O1—C2—C3—C14 | −2.02 (14) | C3—C4—C11—C10 | −179.17 (10) |
| C1—C2—C3—C14 | 178.23 (9) | C5—C10—C11—C4 | −0.18 (19) |
| C2—C3—C4—C11 | −0.13 (14) | C9—C10—C11—C4 | −179.22 (10) |
| C14—C3—C4—C11 | −178.71 (9) | C5—C10—C11—C12 | 179.87 (10) |
| C15—O3—C6—C5 | −166.26 (8) | C9—C10—C11—C12 | 0.83 (10) |
| C15—O3—C6—C7 | 13.32 (13) | C9—N1—C12—C1 | −179.26 (9) |
| C10—C5—C6—O3 | −178.94 (8) | C9—N1—C12—C11 | 0.49 (11) |
| C10—C5—C6—C7 | 1.47 (14) | C2—C1—C12—N1 | −179.72 (9) |
| O3—C6—C7—C8 | −179.69 (8) | C2—C1—C12—C11 | 0.56 (14) |
| C5—C6—C7—C8 | −0.13 (14) | C4—C11—C12—N1 | 179.22 (8) |
| C6—C7—C8—C9 | −1.58 (14) | C10—C11—C12—N1 | −0.82 (10) |
| C7—C8—C9—N1 | −179.11 (9) | C4—C11—C12—C1 | −1.01 (14) |
| C7—C8—C9—C10 | 1.98 (14) | C10—C11—C12—C1 | 178.95 (9) |
| C12—N1—C9—C8 | −178.97 (10) | C4—C3—C14—O2 | −3.35 (16) |
| C12—N1—C9—C10 | 0.05 (11) | C2—C3—C14—O2 | 178.08 (10) |
| C6—C5—C10—C9 | −1.08 (13) |
| H··· | ||||
| N1—H1N1···O3i | 0.890 (17) | 2.106 (17) | 2.9758 (11) | 165.2 (15) |
| C15—H15C···O2ii | 0.98 | 2.44 | 3.3888 (14) | 162 |
| C15—H15A···Cg2iii | 0.98 | 2.91 | 3.6613 (12) | 134 |
Hydrogen-bond geometry (Å, °)
Cg2 is the centroid of the C1–C4/C11/C12 ring.
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.890 (17) | 2.106 (17) | 2.9758 (11) | 165.2 (15) |
| C15—H15 | 0.98 | 2.44 | 3.3888 (14) | 162 |
| C15—H15 | 0.98 | 2.91 | 3.6613 (12) | 134 |
Symmetry codes: (i) ; (ii) ; (iii) .