Literature DB >> 21837182

Glycozolidal.

Hoong-Kun Fun, Wisanu Maneerat, Surat Laphookhieo, Suchada Chantrapromma.   

Abstract

THE TITLE COMPOUND KNOWN AS GLYCOZOLIDAL (SYSTEMATIC NAME: 2,7-dimeth-oxy-9H-carbazole-3-carbaldehyde), C(15)H(13)NO(3), is a naturally occurring carbazole, which was isolated from the roots of Clausena lansium. The carbazole ring system is essentially planar, with an r.m.s. deviation of 0.0093 (1) Å. In the crystal, inter-molecular N-H⋯O hydrogen bonds connect the mol-ecules into a chain along the c axis. C-H⋯O, C-H⋯π and π-π inter-actions, with centroid-centroid distances of 3.5924 (6), 3.6576 (6) and 3.8613 (6) Å, are also observed.

Entities:  

Year:  2011        PMID: 21837182      PMCID: PMC3151865          DOI: 10.1107/S1600536811024160

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For bond-length data, see: Allen et al. (1987 ▶). For background to carbazole alkaloids and their activities, see: Kongkathip & Kongkathip (2009 ▶); Laphookhieo et al. (2009 ▶); Li et al. (1991 ▶); Maneerat & Laphookhieo (2010 ▶); Maneerat et al. (2010 ▶); Sripisut & Laphookhieo (2010 ▶); Tangyuenyongwatthana et al. (1992 ▶); Thongthoom et al. (2010 ▶); Yenjai et al. (2000 ▶). For related structures, see: Fun et al. (2007 ▶, 2009 ▶, 2010 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C15H13NO3 M = 255.26 Monoclinic, a = 20.5756 (4) Å b = 8.1298 (1) Å c = 14.0411 (3) Å β = 98.871 (1)° V = 2320.64 (7) Å3 Z = 8 Mo Kα radiation μ = 0.10 mm−1 T = 100 K 0.53 × 0.42 × 0.16 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.947, T max = 0.984 13003 measured reflections 3381 independent reflections 3032 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.115 S = 1.04 3381 reflections 178 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.45 e Å−3 Δρmin = −0.24 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811024160/is2736sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811024160/is2736Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811024160/is2736Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H13NO3F(000) = 1072
Mr = 255.26Dx = 1.461 Mg m3
Monoclinic, C2/cMelting point = 469.6–470.7 K
Hall symbol: -C 2ycMo Kα radiation, λ = 0.71073 Å
a = 20.5756 (4) ÅCell parameters from 3381 reflections
b = 8.1298 (1) Åθ = 2.0–30.0°
c = 14.0411 (3) ŵ = 0.10 mm1
β = 98.871 (1)°T = 100 K
V = 2320.64 (7) Å3Block, yellow
Z = 80.53 × 0.42 × 0.16 mm
Bruker APEXII CCD area-detector diffractometer3381 independent reflections
Radiation source: sealed tube3032 reflections with I > 2σ(I)
graphiteRint = 0.020
φ and ω scansθmax = 30.0°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −28→28
Tmin = 0.947, Tmax = 0.984k = −11→9
13003 measured reflectionsl = −19→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.115H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0682P)2 + 1.6186P] where P = (Fo2 + 2Fc2)/3
3381 reflections(Δ/σ)max = 0.001
178 parametersΔρmax = 0.45 e Å3
0 restraintsΔρmin = −0.24 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 120.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.06869 (4)0.45177 (10)0.60778 (5)0.01915 (17)
O20.01915 (4)0.13634 (10)0.39162 (6)0.02408 (18)
O30.34527 (3)0.26588 (9)0.16940 (5)0.01588 (16)
N10.27840 (4)0.55708 (10)0.49606 (6)0.01503 (17)
H1N10.2977 (8)0.626 (2)0.5410 (12)0.031 (4)*
C10.17456 (5)0.51795 (12)0.56255 (7)0.01507 (18)
H1A0.18550.59220.61480.018*
C20.11513 (5)0.43366 (12)0.54868 (7)0.01486 (19)
C30.09900 (5)0.32215 (12)0.47030 (7)0.01479 (18)
C40.14322 (5)0.29659 (12)0.40535 (7)0.01420 (18)
H4A0.13250.22210.35320.017*
C50.27380 (4)0.30870 (12)0.28279 (7)0.01392 (18)
H5A0.24400.23300.24790.017*
C60.33378 (5)0.34504 (12)0.25284 (7)0.01366 (18)
C70.37905 (5)0.45348 (12)0.30457 (7)0.01510 (18)
H7A0.41960.47590.28260.018*
C80.36473 (5)0.52877 (12)0.38837 (7)0.01506 (19)
H8A0.39550.60030.42480.018*
C90.30431 (5)0.49645 (12)0.41708 (7)0.01365 (18)
C100.25861 (4)0.38624 (11)0.36532 (6)0.01310 (18)
C110.20281 (4)0.38018 (11)0.41712 (6)0.01329 (18)
C120.21752 (4)0.48914 (11)0.49667 (7)0.01357 (18)
C130.08690 (5)0.55135 (13)0.69203 (7)0.0199 (2)
H13A0.05100.55190.73050.030*
H13B0.09550.66410.67260.030*
H13C0.12660.50610.73060.030*
C140.03699 (5)0.23074 (13)0.45831 (8)0.0192 (2)
H14A0.00890.24570.50530.023*
C150.41126 (5)0.27000 (14)0.14839 (8)0.0200 (2)
H15A0.41530.19320.09580.030*
H15B0.44190.23800.20590.030*
H15C0.42170.38160.12910.030*
U11U22U33U12U13U23
O10.0164 (3)0.0238 (4)0.0186 (4)−0.0010 (3)0.0070 (3)−0.0029 (3)
O20.0178 (4)0.0251 (4)0.0294 (4)−0.0050 (3)0.0038 (3)−0.0061 (3)
O30.0146 (3)0.0201 (3)0.0135 (3)0.0005 (2)0.0042 (2)−0.0016 (2)
N10.0141 (4)0.0167 (4)0.0145 (4)−0.0030 (3)0.0028 (3)−0.0026 (3)
C10.0157 (4)0.0159 (4)0.0137 (4)−0.0003 (3)0.0025 (3)−0.0008 (3)
C20.0142 (4)0.0162 (4)0.0147 (4)0.0011 (3)0.0039 (3)0.0015 (3)
C30.0135 (4)0.0156 (4)0.0154 (4)−0.0007 (3)0.0025 (3)0.0012 (3)
C40.0144 (4)0.0145 (4)0.0136 (4)−0.0010 (3)0.0017 (3)0.0007 (3)
C50.0139 (4)0.0143 (4)0.0134 (4)−0.0007 (3)0.0018 (3)0.0004 (3)
C60.0149 (4)0.0145 (4)0.0118 (4)0.0013 (3)0.0029 (3)0.0010 (3)
C70.0133 (4)0.0164 (4)0.0157 (4)−0.0014 (3)0.0029 (3)0.0016 (3)
C80.0143 (4)0.0156 (4)0.0152 (4)−0.0026 (3)0.0021 (3)0.0004 (3)
C90.0138 (4)0.0137 (4)0.0133 (4)−0.0004 (3)0.0018 (3)0.0006 (3)
C100.0129 (4)0.0138 (4)0.0127 (4)−0.0006 (3)0.0021 (3)0.0014 (3)
C110.0134 (4)0.0143 (4)0.0123 (4)−0.0004 (3)0.0024 (3)0.0008 (3)
C120.0132 (4)0.0140 (4)0.0133 (4)−0.0003 (3)0.0015 (3)0.0012 (3)
C130.0226 (5)0.0206 (5)0.0178 (5)0.0012 (4)0.0074 (4)−0.0015 (4)
C140.0143 (4)0.0206 (5)0.0232 (5)−0.0019 (3)0.0047 (3)−0.0002 (4)
C150.0166 (4)0.0243 (5)0.0204 (5)−0.0012 (4)0.0073 (4)−0.0016 (4)
O1—C21.3667 (11)C5—C101.3962 (13)
O1—C131.4347 (13)C5—H5A0.9500
O2—C141.2225 (13)C6—C71.4013 (13)
O3—C61.3887 (11)C7—C81.3975 (13)
O3—C151.4337 (11)C7—H7A0.9500
N1—C121.3702 (11)C8—C91.3896 (13)
N1—C91.3927 (12)C8—H8A0.9500
N1—H1N10.890 (17)C9—C101.4158 (13)
C1—C21.3890 (13)C10—C111.4516 (12)
C1—C121.3944 (13)C11—C121.4212 (13)
C1—H1A0.9500C13—H13A0.9800
C2—C31.4250 (13)C13—H13B0.9800
C3—C41.3995 (13)C13—H13C0.9800
C3—C141.4637 (13)C14—H14A0.9500
C4—C111.3892 (13)C15—H15A0.9800
C4—H4A0.9500C15—H15B0.9800
C5—C61.3954 (12)C15—H15C0.9800
C2—O1—C13116.31 (8)C7—C8—H8A120.8
C6—O3—C15116.91 (8)C8—C9—N1129.31 (9)
C12—N1—C9108.96 (8)C8—C9—C10121.59 (9)
C12—N1—H1N1123.8 (11)N1—C9—C10109.10 (8)
C9—N1—H1N1127.2 (11)C5—C10—C9119.72 (8)
C2—C1—C12117.29 (9)C5—C10—C11134.11 (8)
C2—C1—H1A121.4C9—C10—C11106.16 (8)
C12—C1—H1A121.4C4—C11—C12118.40 (8)
O1—C2—C1122.99 (9)C4—C11—C10135.13 (9)
O1—C2—C3115.86 (8)C12—C11—C10106.47 (8)
C1—C2—C3121.15 (9)N1—C12—C1127.59 (9)
C4—C3—C2120.03 (9)N1—C12—C11109.30 (8)
C4—C3—C14119.50 (9)C1—C12—C11123.10 (9)
C2—C3—C14120.45 (9)O1—C13—H13A109.5
C11—C4—C3120.02 (9)O1—C13—H13B109.5
C11—C4—H4A120.0H13A—C13—H13B109.5
C3—C4—H4A120.0O1—C13—H13C109.5
C6—C5—C10118.43 (8)H13A—C13—H13C109.5
C6—C5—H5A120.8H13B—C13—H13C109.5
C10—C5—H5A120.8O2—C14—C3124.07 (10)
O3—C6—C5115.45 (8)O2—C14—H14A118.0
O3—C6—C7122.88 (8)C3—C14—H14A118.0
C5—C6—C7121.67 (9)O3—C15—H15A109.5
C8—C7—C6120.15 (8)O3—C15—H15B109.5
C8—C7—H7A119.9H15A—C15—H15B109.5
C6—C7—H7A119.9O3—C15—H15C109.5
C9—C8—C7118.40 (9)H15A—C15—H15C109.5
C9—C8—H8A120.8H15B—C15—H15C109.5
C13—O1—C2—C1−6.03 (14)C6—C5—C10—C11179.98 (10)
C13—O1—C2—C3174.23 (8)C8—C9—C10—C5−0.65 (14)
C12—C1—C2—O1−179.61 (9)N1—C9—C10—C5−179.76 (8)
C12—C1—C2—C30.12 (14)C8—C9—C10—C11178.56 (9)
O1—C2—C3—C4179.41 (8)N1—C9—C10—C11−0.55 (10)
C1—C2—C3—C4−0.33 (14)C3—C4—C11—C120.77 (14)
O1—C2—C3—C14−2.02 (14)C3—C4—C11—C10−179.17 (10)
C1—C2—C3—C14178.23 (9)C5—C10—C11—C4−0.18 (19)
C2—C3—C4—C11−0.13 (14)C9—C10—C11—C4−179.22 (10)
C14—C3—C4—C11−178.71 (9)C5—C10—C11—C12179.87 (10)
C15—O3—C6—C5−166.26 (8)C9—C10—C11—C120.83 (10)
C15—O3—C6—C713.32 (13)C9—N1—C12—C1−179.26 (9)
C10—C5—C6—O3−178.94 (8)C9—N1—C12—C110.49 (11)
C10—C5—C6—C71.47 (14)C2—C1—C12—N1−179.72 (9)
O3—C6—C7—C8−179.69 (8)C2—C1—C12—C110.56 (14)
C5—C6—C7—C8−0.13 (14)C4—C11—C12—N1179.22 (8)
C6—C7—C8—C9−1.58 (14)C10—C11—C12—N1−0.82 (10)
C7—C8—C9—N1−179.11 (9)C4—C11—C12—C1−1.01 (14)
C7—C8—C9—C101.98 (14)C10—C11—C12—C1178.95 (9)
C12—N1—C9—C8−178.97 (10)C4—C3—C14—O2−3.35 (16)
C12—N1—C9—C100.05 (11)C2—C3—C14—O2178.08 (10)
C6—C5—C10—C9−1.08 (13)
Cg2 is the centroid of the C1–C4/C11/C12 ring.
D—H···AD—HH···AD···AD—H···A
N1—H1N1···O3i0.890 (17)2.106 (17)2.9758 (11)165.2 (15)
C15—H15C···O2ii0.982.443.3888 (14)162
C15—H15A···Cg2iii0.982.913.6613 (12)134
Table 1

Hydrogen-bond geometry (Å, °)

Cg2 is the centroid of the C1–C4/C11/C12 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N1⋯O3i0.890 (17)2.106 (17)2.9758 (11)165.2 (15)
C15—H15C⋯O2ii0.982.443.3888 (14)162
C15—H15ACg2iii0.982.913.6613 (12)134

Symmetry codes: (i) ; (ii) ; (iii) .

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