Literature DB >> 21577947

Indizoline.

Hoong-Kun Fun, Wisanu Maneerat, Surat Laphookhieo, Suchada Chantrapromma.   

Abstract

THE TITLE COMPOUND [SYSTEMATIC NAME: 1-meth-oxy-2-(3-methyl-but-2-en-yl)-9H-carbazole-3-carbaldehyde], C(19)H(19)NO(2), is a natural carbazole which was isolated from the twigs of Clausena lansium. The carbazole ring system is essentially planar with a mean deviation of 0.0068 (10) Å. The aldehyde substituent is approximately co-planar with the attached benzene ring with a torsion angle of -8.58 (14)°, whereas the meth-oxy group is rotated out of the benzene plane with a torsion angle of -82.17 (11)°. The dihedral angle between the mean planes of the 3-methyl-2-butenyl group and the carbazole ring is 88.06 (5)°. An inter-molecular N-H⋯O inter-action connects the mol-ecules into a chain along the a axis. The crystal is further consolidated by a C-H⋯O hydrogen bond and two π-π inter-actions with centroid-centroid distances of 3.6592 (6) and 3.7440 (6) Å.

Entities:  

Year:  2009        PMID: 21577947      PMCID: PMC2970378          DOI: 10.1107/S1600536809036915

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For bond-length data, see Allen et al. (1987 ▶). For background to carbazoles and their biological activity, see: Adebajo et al. (2009 ▶); Ito et al. (1998 ▶); Kumar et al. (1995 ▶); Lin (1989 ▶); Ng et al. (2003 ▶); Yang et al. (1988 ▶). For a related structure, see: Fun et al. (2007 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C19H19NO2 M = 293.35 Triclinic, a = 9.0467 (1) Å b = 9.3257 (1) Å c = 10.6927 (1) Å α = 65.717 (1)° β = 86.994 (1)° γ = 68.323 (1)° V = 758.86 (2) Å3 Z = 2 Mo Kα radiation μ = 0.08 mm−1 T = 100 K 0.53 × 0.27 × 0.22 mm

Data collection

Bruker APEXII CCD area detector diffractometer Absorption correction: multi-scan (; Bruker, 2005 ▶) T min = 0.957, T max = 0.982 20515 measured reflections 4410 independent reflections 3887 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.124 S = 1.05 4410 reflections 206 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.47 e Å−3 Δρmin = −0.27 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809036915/is2459sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809036915/is2459Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H19NO2Z = 2
Mr = 293.35F(000) = 312
Triclinic, P1Dx = 1.284 Mg m3
Hall symbol: -P 1Melting point = 344–345 K
a = 9.0467 (1) ÅMo Kα radiation, λ = 0.71073 Å
b = 9.3257 (1) ÅCell parameters from 4410 reflections
c = 10.6927 (1) Åθ = 2.1–30.0°
α = 65.717 (1)°µ = 0.08 mm1
β = 86.994 (1)°T = 100 K
γ = 68.323 (1)°Block, yellow
V = 758.86 (2) Å30.53 × 0.27 × 0.22 mm
Bruker APEXII CCD area detector diffractometer4410 independent reflections
Radiation source: sealed tube3887 reflections with I > 2σ(I)
graphiteRint = 0.023
φ and ω scansθmax = 30.0°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −12→12
Tmin = 0.957, Tmax = 0.982k = −13→13
20515 measured reflectionsl = −15→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.124H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0684P)2 + 0.2509P] where P = (Fo2 + 2Fc2)/3
4410 reflections(Δ/σ)max = 0.001
206 parametersΔρmax = 0.47 e Å3
0 restraintsΔρmin = −0.27 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.26909 (8)0.78512 (9)0.28630 (7)0.01884 (16)
O20.90034 (9)0.78623 (10)0.07678 (8)0.02297 (17)
N10.23115 (10)0.73264 (11)0.03746 (9)0.01646 (17)
C10.26191 (11)0.70558 (11)−0.08151 (10)0.01576 (18)
C20.16804 (12)0.67357 (12)−0.15826 (11)0.0196 (2)
H2A0.06920.6690−0.13360.024*
C30.22843 (13)0.64886 (13)−0.27314 (11)0.0212 (2)
H3A0.16850.6274−0.32640.025*
C40.37714 (13)0.65536 (13)−0.31088 (10)0.0204 (2)
H4A0.41400.6386−0.38860.024*
C50.47039 (12)0.68656 (12)−0.23362 (10)0.01765 (19)
H5A0.56940.6902−0.25850.021*
C60.41224 (11)0.71237 (11)−0.11773 (9)0.01449 (17)
C70.47446 (11)0.74608 (11)−0.01497 (9)0.01365 (17)
C80.61476 (11)0.76411 (11)0.00817 (9)0.01443 (17)
H8A0.69380.7538−0.05050.017*
C90.63649 (11)0.79781 (11)0.11998 (9)0.01434 (17)
C100.51798 (11)0.81249 (11)0.21241 (9)0.01415 (17)
C110.38006 (11)0.78850 (11)0.19182 (9)0.01450 (18)
C120.35762 (11)0.75789 (11)0.07777 (9)0.01417 (17)
C130.78581 (11)0.81675 (12)0.14115 (10)0.01751 (19)
H13A0.79400.85430.20770.021*
C140.54154 (12)0.84670 (12)0.33525 (10)0.01731 (18)
H14A0.57510.94210.30460.021*
H14B0.44000.87840.37180.021*
C150.66415 (12)0.69530 (12)0.44873 (10)0.01723 (19)
H15A0.66190.58950.46790.021*
C160.77577 (12)0.69655 (12)0.52484 (10)0.01787 (19)
C170.79953 (15)0.85421 (14)0.50890 (13)0.0288 (2)
H17A0.73490.94900.42730.043*
H17B0.91030.83740.50100.043*
H17C0.76860.87690.58820.043*
C180.88710 (13)0.53395 (13)0.63786 (11)0.0229 (2)
H18A0.85570.44220.64850.034*
H18B0.88190.54630.72300.034*
H18C0.99470.50970.61410.034*
C190.13064 (13)0.94117 (15)0.24419 (12)0.0251 (2)
H19A0.06250.93330.31660.038*
H19B0.07300.96070.16210.038*
H19C0.16391.03390.22560.038*
H1N10.145 (2)0.7418 (19)0.0698 (16)0.029 (4)*
U11U22U33U12U13U23
O10.0144 (3)0.0228 (3)0.0189 (3)−0.0072 (3)0.0064 (3)−0.0089 (3)
O20.0127 (3)0.0318 (4)0.0239 (4)−0.0103 (3)0.0028 (3)−0.0097 (3)
N10.0107 (4)0.0217 (4)0.0199 (4)−0.0077 (3)0.0032 (3)−0.0102 (3)
C10.0129 (4)0.0159 (4)0.0182 (4)−0.0051 (3)0.0004 (3)−0.0070 (3)
C20.0148 (4)0.0203 (4)0.0247 (5)−0.0065 (3)−0.0012 (3)−0.0103 (4)
C30.0208 (5)0.0206 (4)0.0226 (5)−0.0067 (4)−0.0033 (4)−0.0100 (4)
C40.0237 (5)0.0197 (4)0.0182 (4)−0.0073 (4)0.0003 (4)−0.0090 (3)
C50.0175 (4)0.0177 (4)0.0176 (4)−0.0064 (3)0.0026 (3)−0.0077 (3)
C60.0123 (4)0.0139 (4)0.0161 (4)−0.0043 (3)0.0005 (3)−0.0056 (3)
C70.0108 (4)0.0138 (4)0.0153 (4)−0.0045 (3)0.0014 (3)−0.0052 (3)
C80.0105 (4)0.0158 (4)0.0160 (4)−0.0050 (3)0.0027 (3)−0.0060 (3)
C90.0107 (4)0.0147 (4)0.0163 (4)−0.0051 (3)0.0006 (3)−0.0050 (3)
C100.0120 (4)0.0142 (4)0.0153 (4)−0.0047 (3)0.0007 (3)−0.0055 (3)
C110.0112 (4)0.0160 (4)0.0160 (4)−0.0054 (3)0.0034 (3)−0.0064 (3)
C120.0102 (4)0.0150 (4)0.0166 (4)−0.0048 (3)0.0011 (3)−0.0060 (3)
C130.0133 (4)0.0201 (4)0.0178 (4)−0.0077 (3)−0.0002 (3)−0.0052 (3)
C140.0152 (4)0.0192 (4)0.0179 (4)−0.0052 (3)0.0007 (3)−0.0093 (3)
C150.0171 (4)0.0177 (4)0.0166 (4)−0.0071 (3)0.0021 (3)−0.0066 (3)
C160.0156 (4)0.0200 (4)0.0173 (4)−0.0065 (3)0.0017 (3)−0.0075 (3)
C170.0303 (6)0.0248 (5)0.0321 (6)−0.0115 (4)−0.0063 (4)−0.0109 (4)
C180.0216 (5)0.0231 (5)0.0200 (4)−0.0078 (4)−0.0023 (4)−0.0053 (4)
C190.0161 (5)0.0297 (5)0.0280 (5)−0.0041 (4)0.0061 (4)−0.0152 (4)
O1—C111.3857 (11)C9—C131.4658 (13)
O1—C191.4363 (13)C10—C111.3895 (12)
O2—C131.2235 (12)C10—C141.5155 (12)
N1—C121.3727 (11)C11—C121.4018 (12)
N1—C11.3909 (12)C13—H13A0.9300
N1—H1N10.822 (17)C14—C151.5071 (13)
C1—C21.3948 (13)C14—H14A0.9700
C1—C61.4113 (13)C14—H14B0.9700
C2—C31.3892 (14)C15—C161.3360 (13)
C2—H2A0.9300C15—H15A0.9300
C3—C41.3999 (15)C16—C171.5035 (14)
C3—H3A0.9300C16—C181.5054 (14)
C4—C51.3895 (14)C17—H17A0.9600
C4—H4A0.9300C17—H17B0.9600
C5—C61.3978 (13)C17—H17C0.9600
C5—H5A0.9300C18—H18A0.9600
C6—C71.4500 (12)C18—H18B0.9600
C7—C81.3875 (12)C18—H18C0.9600
C7—C121.4167 (12)C19—H19A0.9600
C8—C91.3951 (13)C19—H19B0.9600
C8—H8A0.9300C19—H19C0.9600
C9—C101.4271 (13)
C11—O1—C19113.68 (8)N1—C12—C11128.96 (9)
C12—N1—C1108.62 (8)N1—C12—C7109.54 (8)
C12—N1—H1N1128.2 (11)C11—C12—C7121.50 (8)
C1—N1—H1N1122.8 (11)O2—C13—C9124.13 (9)
N1—C1—C2128.87 (9)O2—C13—H13A117.9
N1—C1—C6109.20 (8)C9—C13—H13A117.9
C2—C1—C6121.92 (9)C15—C14—C10112.82 (8)
C3—C2—C1117.16 (9)C15—C14—H14A109.0
C3—C2—H2A121.4C10—C14—H14A109.0
C1—C2—H2A121.4C15—C14—H14B109.0
C2—C3—C4121.77 (9)C10—C14—H14B109.0
C2—C3—H3A119.1H14A—C14—H14B107.8
C4—C3—H3A119.1C16—C15—C14127.08 (9)
C5—C4—C3120.78 (9)C16—C15—H15A116.5
C5—C4—H4A119.6C14—C15—H15A116.5
C3—C4—H4A119.6C15—C16—C17124.45 (9)
C4—C5—C6118.63 (9)C15—C16—C18120.70 (9)
C4—C5—H5A120.7C17—C16—C18114.84 (9)
C6—C5—H5A120.7C16—C17—H17A109.5
C5—C6—C1119.73 (9)C16—C17—H17B109.5
C5—C6—C7133.90 (9)H17A—C17—H17B109.5
C1—C6—C7106.36 (8)C16—C17—H17C109.5
C8—C7—C12119.22 (8)H17A—C17—H17C109.5
C8—C7—C6134.49 (8)H17B—C17—H17C109.5
C12—C7—C6106.27 (8)C16—C18—H18A109.5
C7—C8—C9119.55 (8)C16—C18—H18B109.5
C7—C8—H8A120.2H18A—C18—H18B109.5
C9—C8—H8A120.2C16—C18—H18C109.5
C8—C9—C10121.40 (8)H18A—C18—H18C109.5
C8—C9—C13118.14 (8)H18B—C18—H18C109.5
C10—C9—C13120.46 (8)O1—C19—H19A109.5
C11—C10—C9118.94 (8)O1—C19—H19B109.5
C11—C10—C14119.26 (8)H19A—C19—H19B109.5
C9—C10—C14121.76 (8)O1—C19—H19C109.5
O1—C11—C10120.95 (8)H19A—C19—H19C109.5
O1—C11—C12119.63 (8)H19B—C19—H19C109.5
C10—C11—C12119.33 (8)
C12—N1—C1—C2179.57 (9)C13—C9—C10—C14−0.39 (13)
C12—N1—C1—C60.45 (10)C19—O1—C11—C10101.43 (10)
N1—C1—C2—C3−179.21 (9)C19—O1—C11—C12−82.17 (11)
C6—C1—C2—C3−0.19 (14)C9—C10—C11—O1173.69 (8)
C1—C2—C3—C40.09 (15)C14—C10—C11—O1−3.97 (13)
C2—C3—C4—C50.20 (15)C9—C10—C11—C12−2.73 (13)
C3—C4—C5—C6−0.37 (14)C14—C10—C11—C12179.61 (8)
C4—C5—C6—C10.27 (14)C1—N1—C12—C11−179.49 (9)
C4—C5—C6—C7179.54 (9)C1—N1—C12—C7−0.48 (10)
N1—C1—C6—C5179.20 (8)O1—C11—C12—N14.24 (15)
C2—C1—C6—C50.01 (14)C10—C11—C12—N1−179.30 (9)
N1—C1—C6—C7−0.25 (10)O1—C11—C12—C7−174.67 (8)
C2—C1—C6—C7−179.44 (8)C10—C11—C12—C71.79 (14)
C5—C6—C7—C8−0.63 (18)C8—C7—C12—N1−178.66 (8)
C1—C6—C7—C8178.71 (10)C6—C7—C12—N10.31 (10)
C5—C6—C7—C12−179.38 (10)C8—C7—C12—C110.44 (13)
C1—C6—C7—C12−0.04 (10)C6—C7—C12—C11179.42 (8)
C12—C7—C8—C9−1.64 (13)C8—C9—C13—O2−8.58 (14)
C6—C7—C8—C9179.73 (9)C10—C9—C13—O2170.98 (9)
C7—C8—C9—C100.67 (13)C11—C10—C14—C15105.69 (10)
C7—C8—C9—C13−179.77 (8)C9—C10—C14—C15−71.91 (11)
C8—C9—C10—C111.55 (13)C10—C14—C15—C16139.14 (10)
C13—C9—C10—C11−177.99 (8)C14—C15—C16—C17−0.51 (17)
C8—C9—C10—C14179.15 (8)C14—C15—C16—C18178.19 (9)
D—H···AD—HH···AD···AD—H···A
N1—H1N1···O2i0.825 (19)2.099 (19)2.8843 (13)158.8 (15)
C18—H18A···O1ii0.962.593.5369 (15)168
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N1⋯O2i0.825 (19)2.099 (19)2.8843 (13)158.8 (15)
C18—H18A⋯O1ii0.962.593.5369 (15)168

Symmetry codes: (i) ; (ii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  A homodimeric sporamin-type trypsin inhibitor with antiproliferative, HIV reverse transcriptase-inhibitory and antifungal activities from wampee (Clausena lansium) seeds.

Authors:  Tzi B Ng; Sze K Lam; Wing P Fong
Journal:  Biol Chem       Date:  2003-02       Impact factor: 3.915

3.  Pharmacological properties of the extract and some isolated compounds of Clausena lansium stem bark: anti-trichomonal, antidiabetic, anti-inflammatory, hepatoprotective and antioxidant effects.

Authors:  A C Adebajo; E O Iwalewa; E M Obuotor; G F Ibikunle; N O Omisore; C O Adewunmi; O O Obaparusi; M Klaes; G E Adetogun; T J Schmidt; E J Verspohl
Journal:  J Ethnopharmacol       Date:  2008-11-27       Impact factor: 4.360

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total
  2 in total

1.  2-Hy-droxy-7-meth-oxy-9H-carbazole-3-carbaldehyde.

Authors:  Hoong-Kun Fun; Wisanu Maneerat; Surat Laphookhieo; Suchada Chantrapromma
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-28

2.  Glycozolidal.

Authors:  Hoong-Kun Fun; Wisanu Maneerat; Surat Laphookhieo; Suchada Chantrapromma
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-06-25
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.