Literature DB >> 21588744

2-Hy-droxy-7-meth-oxy-9H-carbazole-3-carbaldehyde.

Hoong-Kun Fun, Wisanu Maneerat, Surat Laphookhieo, Suchada Chantrapromma.   

Abstract

The title compound, C(14)H(11)NO(3), was isolated from the roots of Clausena wallichii. The carbazole ring system is approx-imately planar (r.m.s. deviation = 0.039 Å) and the dihedral angle between the two benzene rings is 4.63 (7)°. An intra-molecular O-H⋯O hydrogen bond generates an S(6) ring motif. In the crystal, mol-ecules are linked into a zigzag network extending parallel to the ac plane by O-H⋯N and N-H⋯O hydrogen bonds.

Entities:  

Year:  2010        PMID: 21588744      PMCID: PMC3007870          DOI: 10.1107/S1600536810033805

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For compounds isolated from plants of genera Rutaceae and their pharmacological activity, see: Ito et al. (1997 ▶); Kongkathip & Kongkathip (2009 ▶); Laphookhieo et al. (2009 ▶); Li et al. (1991 ▶); Maneerat & Laphookhieo (2010 ▶); Maneerat et al. (2010 ▶); Sripisut & Laphookhieo (2010 ▶); Tangyuenyongwatthana et al. (1992 ▶); Yenjai et al. 2000 ▶). For a related structure, see: Fun et al. (2009 ▶). For bond-length data, see: Allen et al. (1987 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For the stability of the temperature controller used in the data collection, see Cosier & Glazer, (1986 ▶).

Experimental

Crystal data

C14H11NO3 M = 241.24 Orthorhombic, a = 12.4352 (4) Å b = 17.6564 (5) Å c = 5.0839 (1) Å V = 1116.23 (5) Å3 Z = 4 Cu Kα radiation μ = 0.84 mm−1 T = 100 K 0.23 × 0.19 × 0.10 mm

Data collection

Bruker APEXII DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.831, T max = 0.918 25207 measured reflections 2026 independent reflections 2018 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.097 S = 1.31 2026 reflections 170 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.64 e Å−3 Δρmin = −0.63 e Å−3 Absolute structure: Flack (1983 ▶), 851 Friedel pairs Flack parameter: 0.17 (19) Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810033805/ci5167sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810033805/ci5167Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H11NO3Dx = 1.435 Mg m3
Mr = 241.24Melting point = 496.7–498.8 K
Orthorhombic, Pna21Cu Kα radiation, λ = 1.54178 Å
Hall symbol: P 2c -2nCell parameters from 2026 reflections
a = 12.4352 (4) Åθ = 4.4–69.9°
b = 17.6564 (5) ŵ = 0.84 mm1
c = 5.0839 (1) ÅT = 100 K
V = 1116.23 (5) Å3Plate, yellow
Z = 40.23 × 0.19 × 0.10 mm
F(000) = 504
Bruker APEXII DUO CCD area-detector diffractometer2026 independent reflections
Radiation source: sealed tube2018 reflections with I > 2σ(I)
graphiteRint = 0.027
φ and ω scansθmax = 69.9°, θmin = 4.4°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −14→14
Tmin = 0.831, Tmax = 0.918k = −21→21
25207 measured reflectionsl = −5→6
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.030w = 1/[σ2(Fo2) + (0.0656P)2 + 0.054P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.097(Δ/σ)max = 0.001
S = 1.31Δρmax = 0.64 e Å3
2026 reflectionsΔρmin = −0.63 e Å3
170 parametersExtinction correction: SHELXTL (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
1 restraintExtinction coefficient: 0.053 (3)
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack (1983), 851 Friedel pairs
Secondary atom site location: difference Fourier mapFlack parameter: 0.17 (19)
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.59667 (8)0.17861 (6)0.4400 (2)0.0264 (3)
H1O10.65370.17960.51490.056 (7)*
O20.72058 (8)0.20104 (6)0.8557 (3)0.0294 (3)
O30.12071 (9)0.59553 (6)0.5822 (3)0.0325 (3)
N10.32559 (9)0.37021 (7)0.3111 (3)0.0203 (3)
H1N10.2898 (14)0.3514 (10)0.185 (5)0.029 (5)*
C10.46098 (10)0.26763 (8)0.3568 (3)0.0213 (3)
H1A0.43660.23910.21500.026*
C20.54764 (10)0.24453 (8)0.5070 (3)0.0212 (3)
C30.58509 (11)0.28796 (8)0.7249 (3)0.0220 (3)
C40.53291 (10)0.35607 (8)0.7921 (3)0.0208 (3)
H4A0.55690.38470.93390.025*
C50.36091 (11)0.50464 (7)0.8333 (3)0.0226 (3)
H5A0.40920.51170.97080.027*
C60.27613 (11)0.55440 (8)0.7967 (3)0.0241 (3)
H6A0.26800.59550.90940.029*
C70.20217 (11)0.54348 (8)0.5906 (3)0.0238 (3)
C80.21259 (10)0.48413 (7)0.4134 (3)0.0222 (4)
H8A0.16440.47740.27560.027*
C90.29943 (10)0.43496 (7)0.4528 (3)0.0195 (3)
C100.41167 (10)0.33567 (7)0.4277 (3)0.0196 (3)
C110.44591 (10)0.37986 (8)0.6456 (3)0.0194 (3)
C120.37263 (11)0.44372 (8)0.6603 (3)0.0203 (3)
C130.67188 (10)0.26163 (8)0.8877 (3)0.0244 (3)
H13A0.69300.29231.02730.029*
C140.03861 (12)0.58496 (9)0.3899 (4)0.0354 (4)
H14A−0.01790.62110.41840.053*
H14B0.01010.53460.40430.053*
H14C0.06840.59210.21740.053*
U11U22U33U12U13U23
O10.0261 (5)0.0281 (5)0.0251 (6)0.0080 (4)−0.0009 (4)−0.0024 (5)
O20.0282 (5)0.0358 (6)0.0241 (7)0.0098 (4)−0.0016 (4)0.0011 (5)
O30.0345 (6)0.0291 (6)0.0340 (7)0.0104 (4)−0.0052 (5)−0.0053 (5)
N10.0207 (6)0.0215 (6)0.0187 (6)0.0000 (4)−0.0025 (5)−0.0007 (5)
C10.0224 (6)0.0225 (7)0.0188 (8)−0.0013 (5)0.0010 (6)−0.0003 (5)
C20.0202 (6)0.0226 (6)0.0209 (8)0.0007 (5)0.0047 (5)0.0017 (6)
C30.0206 (7)0.0242 (7)0.0212 (8)−0.0011 (5)0.0019 (6)0.0032 (6)
C40.0207 (6)0.0234 (7)0.0183 (8)−0.0035 (5)0.0000 (5)0.0005 (6)
C50.0257 (7)0.0221 (7)0.0199 (7)−0.0044 (5)−0.0007 (6)0.0000 (6)
C60.0303 (7)0.0204 (6)0.0217 (8)−0.0017 (5)0.0022 (6)−0.0028 (6)
C70.0258 (7)0.0210 (7)0.0246 (8)0.0016 (5)0.0025 (6)0.0029 (6)
C80.0226 (7)0.0224 (7)0.0216 (9)−0.0004 (5)−0.0014 (5)0.0023 (6)
C90.0201 (6)0.0195 (6)0.0191 (8)−0.0028 (5)0.0020 (5)0.0005 (6)
C100.0179 (6)0.0217 (7)0.0193 (8)−0.0026 (4)0.0014 (5)0.0020 (6)
C110.0211 (6)0.0191 (6)0.0180 (8)−0.0036 (5)0.0023 (5)0.0016 (5)
C120.0214 (7)0.0188 (6)0.0206 (8)−0.0030 (5)0.0015 (5)0.0031 (6)
C130.0238 (6)0.0297 (7)0.0198 (9)−0.0003 (5)−0.0001 (6)0.0025 (6)
C140.0353 (8)0.0360 (9)0.0348 (11)0.0131 (6)−0.0077 (7)−0.0022 (8)
O1—C21.3574 (17)C5—C61.3850 (19)
O1—H1O10.81C5—C121.397 (2)
O2—C131.2401 (17)C5—H5A0.93
O3—C71.3685 (16)C6—C71.407 (2)
O3—C141.426 (2)C6—H6A0.93
N1—C101.3671 (18)C7—C81.388 (2)
N1—C91.3899 (18)C8—C91.4000 (17)
N1—H1N10.85 (2)C8—H8A0.93
C1—C21.382 (2)C9—C121.402 (2)
C1—C101.3960 (18)C10—C111.420 (2)
C1—H1A0.93C11—C121.4517 (18)
C2—C31.425 (2)C13—H13A0.93
C3—C41.4086 (19)C14—H14A0.96
C3—C131.438 (2)C14—H14B0.96
C4—C111.379 (2)C14—H14C0.96
C4—H4A0.93
C2—O1—H1O1104.9C8—C7—C6121.71 (13)
C7—O3—C14117.62 (13)C7—C8—C9116.58 (13)
C10—N1—C9109.00 (13)C7—C8—H8A121.7
C10—N1—H1N1124.3 (12)C9—C8—H8A121.7
C9—N1—H1N1126.2 (12)N1—C9—C8128.06 (14)
C2—C1—C10116.99 (14)N1—C9—C12109.20 (12)
C2—C1—H1A121.5C8—C9—C12122.69 (13)
C10—C1—H1A121.5N1—C10—C1128.02 (14)
O1—C2—C1117.68 (14)N1—C10—C11109.13 (12)
O1—C2—C3120.64 (13)C1—C10—C11122.84 (13)
C1—C2—C3121.67 (13)C4—C11—C10119.28 (13)
C4—C3—C2119.83 (13)C4—C11—C12134.53 (14)
C4—C3—C13118.83 (14)C10—C11—C12106.18 (12)
C2—C3—C13121.25 (13)C5—C12—C9119.41 (12)
C11—C4—C3119.36 (14)C5—C12—C11134.10 (14)
C11—C4—H4A120.3C9—C12—C11106.45 (12)
C3—C4—H4A120.3O2—C13—C3124.75 (14)
C6—C5—C12118.88 (14)O2—C13—H13A117.6
C6—C5—H5A120.6C3—C13—H13A117.6
C12—C5—H5A120.6O3—C14—H14A109.5
C5—C6—C7120.71 (14)O3—C14—H14B109.5
C5—C6—H6A119.6H14A—C14—H14B109.5
C7—C6—H6A119.6O3—C14—H14C109.5
O3—C7—C8123.77 (14)H14A—C14—H14C109.5
O3—C7—C6114.52 (14)H14B—C14—H14C109.5
C10—C1—C2—O1−179.79 (13)C2—C1—C10—N1179.92 (13)
C10—C1—C2—C30.13 (19)C2—C1—C10—C11−1.0 (2)
O1—C2—C3—C4−179.74 (12)C3—C4—C11—C10−0.9 (2)
C1—C2—C3—C40.3 (2)C3—C4—C11—C12177.97 (14)
O1—C2—C3—C13−3.2 (2)N1—C10—C11—C4−179.38 (12)
C1—C2—C3—C13176.88 (12)C1—C10—C11—C41.4 (2)
C2—C3—C4—C110.0 (2)N1—C10—C11—C121.49 (15)
C13—C3—C4—C11−176.59 (13)C1—C10—C11—C12−177.74 (12)
C12—C5—C6—C70.7 (2)C6—C5—C12—C90.8 (2)
C14—O3—C7—C84.0 (2)C6—C5—C12—C11−176.30 (14)
C14—O3—C7—C6−175.73 (14)N1—C9—C12—C5−178.86 (12)
C5—C6—C7—O3178.13 (13)C8—C9—C12—C5−1.4 (2)
C5—C6—C7—C8−1.7 (2)N1—C9—C12—C11−1.06 (15)
O3—C7—C8—C9−178.74 (13)C8—C9—C12—C11176.40 (12)
C6—C7—C8—C91.0 (2)C4—C11—C12—C5−1.9 (3)
C10—N1—C9—C8−175.26 (13)C10—C11—C12—C5177.08 (15)
C10—N1—C9—C122.04 (15)C4—C11—C12—C9−179.18 (15)
C7—C8—C9—N1177.45 (14)C10—C11—C12—C9−0.25 (15)
C7—C8—C9—C120.49 (19)C4—C3—C13—O2176.58 (13)
C9—N1—C10—C1176.99 (13)C2—C3—C13—O20.0 (2)
C9—N1—C10—C11−2.19 (15)
D—H···AD—HH···AD···AD—H···A
O1—H1O1···O20.811.962.6453 (17)143
O1—H1O1···N1i0.812.533.0457 (15)123
N1—H1N1···O2ii0.85 (2)2.10 (2)2.941 (2)172 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1O1⋯O20.811.962.6453 (17)143
O1—H1O1⋯N1i0.812.533.0457 (15)123
N1—H1N1⋯O2ii0.85 (2)2.10 (2)2.941 (2)172 (2)

Symmetry codes: (i) ; (ii) .

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