Literature DB >> 21837159

(E)-2-(4-Hy-droxy-3-meth-oxy-benzyl-idene)hydrazinecarboxamide.

Hoong-Kun Fun, Chin Sing Yeap, Shridhar Malladi, Arun M Isloor.   

Abstract

The asymmetric unit of the title compound, C(9)H(11)N(3)O(3), consists of two crystallographically independent mol-ecules. Both mol-ecules are almost planar, with r.m.s. deviations of 0.107 and 0.099 Å. In the crystal, the two independent mol-ecules form a dimer with an R(2) (2)(8) ring motif via N-H⋯O hydrogen bonds. The dimers are further linked into a three-dimensional network by O-H⋯O and N-H⋯O hydrogen bonds.

Entities:  

Year:  2011        PMID: 21837159      PMCID: PMC3151979          DOI: 10.1107/S1600536811024068

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of semicarbazone derivatives, see: Warren et al. (1977 ▶); Chandra & Gupta (2005 ▶); Jain et al. (2002 ▶); Pilgram (1978 ▶); Yogeeswari et al. (2004 ▶). For the synthesis, see: Vogel et al. (1978 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C9H11N3O3 M = 209.21 Orthorhombic, a = 13.8568 (3) Å b = 5.0379 (1) Å c = 26.8582 (5) Å V = 1874.95 (7) Å3 Z = 8 Mo Kα radiation μ = 0.11 mm−1 T = 100 K 0.56 × 0.21 × 0.08 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.939, T max = 0.992 27088 measured reflections 3785 independent reflections 3477 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.098 S = 1.05 3785 reflections 305 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.38 e Å−3 Δρmin = −0.20 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811024068/is2735sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811024068/is2735Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811024068/is2735Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H11N3O3F(000) = 880
Mr = 209.21Dx = 1.482 Mg m3
Orthorhombic, Pca21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2acCell parameters from 8792 reflections
a = 13.8568 (3) Åθ = 3.0–33.7°
b = 5.0379 (1) ŵ = 0.11 mm1
c = 26.8582 (5) ÅT = 100 K
V = 1874.95 (7) Å3Plate, colourless
Z = 80.56 × 0.21 × 0.08 mm
Bruker SMART APEXII CCD area-detector diffractometer3785 independent reflections
Radiation source: fine-focus sealed tube3477 reflections with I > 2σ(I)
graphiteRint = 0.034
φ and ω scansθmax = 33.8°, θmin = 1.5°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −21→21
Tmin = 0.939, Tmax = 0.992k = −7→7
27088 measured reflectionsl = −42→34
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.098H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0558P)2 + 0.2848P] where P = (Fo2 + 2Fc2)/3
3785 reflections(Δ/σ)max < 0.001
305 parametersΔρmax = 0.38 e Å3
1 restraintΔρmin = −0.20 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1A0.36344 (8)1.9545 (3)0.42045 (5)0.0210 (2)
O2A0.17592 (9)1.9564 (2)0.43391 (5)0.0184 (2)
H2OA0.220 (2)2.071 (6)0.4406 (12)0.039 (8)*
O3A0.56955 (8)0.7961 (2)0.21626 (5)0.0197 (2)
N1A0.42454 (10)1.2040 (3)0.29115 (5)0.0167 (2)
N2A0.45328 (10)0.9953 (3)0.26135 (6)0.0176 (3)
H2NA0.411 (2)0.885 (6)0.2484 (11)0.034 (7)*
N3A0.60407 (11)1.1886 (3)0.25456 (6)0.0203 (3)
H3NA0.581 (2)1.323 (6)0.2682 (12)0.041 (8)*
H3NB0.6599 (18)1.207 (5)0.2389 (10)0.025 (6)*
C1A0.35450 (11)1.5891 (3)0.36049 (6)0.0156 (3)
H1A0.42201.58970.35440.019*
C2A0.31448 (10)1.7697 (3)0.39336 (6)0.0144 (3)
C3A0.21404 (11)1.7756 (3)0.40168 (6)0.0148 (3)
C4A0.15552 (11)1.5929 (3)0.37808 (6)0.0173 (3)
H4A0.08791.59410.38390.021*
C5A0.19573 (11)1.4062 (3)0.34560 (6)0.0170 (3)
H5A0.15531.27930.32980.020*
C6A0.29452 (11)1.4047 (3)0.33624 (6)0.0152 (3)
C7A0.33449 (12)1.2052 (3)0.30250 (6)0.0165 (3)
H7A0.29311.07400.28870.020*
C8A0.54501 (11)0.9882 (3)0.24256 (6)0.0156 (3)
C9A0.46611 (11)1.9590 (4)0.41561 (7)0.0213 (3)
H9AA0.49302.09370.43800.032*
H9AB0.48342.00200.38120.032*
H9AC0.49231.78450.42440.032*
O1B0.53465 (8)−0.4555 (2)0.01033 (5)0.0185 (2)
O2B0.72055 (9)−0.3736 (3)−0.00747 (5)0.0207 (2)
H1OB0.6814 (19)−0.481 (5)−0.0197 (11)0.031 (7)*
O3B0.29971 (9)0.6842 (2)0.21721 (5)0.0191 (2)
N1B0.44745 (10)0.2792 (3)0.14260 (5)0.0161 (2)
N2B0.41711 (10)0.4832 (3)0.17293 (5)0.0177 (3)
H2NB0.4597 (19)0.600 (5)0.1853 (10)0.029 (6)*
N3B0.26476 (11)0.2964 (3)0.17689 (6)0.0203 (3)
H3ND0.2088 (18)0.283 (5)0.1902 (10)0.026 (6)*
H3NC0.288 (2)0.162 (6)0.1622 (11)0.038 (8)*
C1B0.53046 (11)−0.0990 (3)0.07266 (6)0.0154 (3)
H1B0.4640−0.12450.07990.019*
C2B0.57608 (10)−0.2581 (3)0.03781 (6)0.0144 (3)
C3B0.67512 (11)−0.2216 (3)0.02783 (6)0.0156 (3)
C4B0.72711 (11)−0.0285 (3)0.05253 (6)0.0174 (3)
H4B0.7940−0.00620.04590.021*
C5B0.68118 (11)0.1338 (3)0.08729 (6)0.0169 (3)
H5B0.71680.26730.10420.020*
C6B0.58328 (11)0.1011 (3)0.09736 (6)0.0148 (3)
C7B0.53818 (11)0.2863 (3)0.13190 (6)0.0157 (3)
H7B0.57730.41800.14720.019*
C8B0.32466 (11)0.4926 (3)0.19051 (6)0.0152 (3)
C9B0.43242 (11)−0.4943 (3)0.01562 (7)0.0192 (3)
H9BA0.4123−0.6471−0.00440.029*
H9BB0.3983−0.33510.00420.029*
H9BC0.4170−0.52720.05070.029*
U11U22U33U12U13U23
O1A0.0126 (5)0.0269 (6)0.0234 (6)−0.0001 (4)−0.0005 (4)−0.0095 (5)
O2A0.0139 (5)0.0211 (5)0.0201 (6)0.0010 (4)0.0028 (4)−0.0038 (4)
O3A0.0163 (5)0.0177 (5)0.0250 (6)−0.0002 (4)0.0041 (4)−0.0053 (5)
N1A0.0182 (6)0.0160 (5)0.0160 (6)0.0016 (4)0.0019 (5)−0.0029 (4)
N2A0.0147 (6)0.0173 (6)0.0209 (6)−0.0013 (4)0.0041 (5)−0.0056 (5)
N3A0.0161 (6)0.0185 (6)0.0261 (7)−0.0022 (5)0.0036 (5)−0.0058 (5)
C1A0.0130 (6)0.0177 (6)0.0161 (6)0.0014 (5)0.0011 (5)−0.0006 (5)
C2A0.0117 (6)0.0178 (6)0.0137 (6)−0.0003 (5)−0.0007 (5)0.0001 (5)
C3A0.0133 (6)0.0167 (6)0.0144 (6)0.0022 (5)0.0013 (5)0.0010 (5)
C4A0.0122 (6)0.0198 (6)0.0199 (7)0.0001 (5)0.0015 (5)0.0000 (5)
C5A0.0141 (6)0.0180 (6)0.0188 (7)−0.0004 (5)−0.0001 (5)−0.0012 (5)
C6A0.0148 (6)0.0161 (6)0.0146 (6)0.0008 (5)0.0005 (5)0.0000 (5)
C7A0.0167 (6)0.0172 (6)0.0154 (6)0.0011 (5)0.0001 (5)−0.0012 (5)
C8A0.0150 (6)0.0161 (6)0.0155 (6)0.0014 (5)0.0000 (5)0.0009 (5)
C9A0.0135 (6)0.0280 (7)0.0223 (7)−0.0024 (5)0.0004 (6)−0.0044 (6)
O1B0.0143 (5)0.0201 (5)0.0212 (6)−0.0006 (4)0.0002 (4)−0.0053 (4)
O2B0.0160 (5)0.0247 (5)0.0213 (6)0.0017 (4)0.0021 (4)−0.0074 (5)
O3B0.0166 (5)0.0170 (5)0.0236 (6)0.0011 (4)0.0038 (4)−0.0046 (4)
N1B0.0168 (6)0.0162 (5)0.0154 (6)0.0010 (4)0.0024 (5)−0.0027 (4)
N2B0.0144 (6)0.0181 (5)0.0206 (6)−0.0011 (4)0.0038 (5)−0.0059 (5)
N3B0.0166 (6)0.0186 (6)0.0258 (7)−0.0018 (5)0.0032 (5)−0.0055 (5)
C1B0.0135 (6)0.0177 (6)0.0151 (6)0.0006 (5)0.0007 (5)−0.0005 (5)
C2B0.0126 (6)0.0156 (6)0.0151 (6)0.0007 (5)0.0001 (5)−0.0004 (5)
C3B0.0149 (6)0.0174 (6)0.0145 (6)0.0028 (5)0.0017 (5)−0.0013 (5)
C4B0.0135 (6)0.0206 (6)0.0181 (7)0.0013 (5)0.0012 (5)−0.0010 (5)
C5B0.0151 (6)0.0190 (6)0.0167 (7)−0.0002 (5)0.0002 (5)−0.0005 (5)
C6B0.0154 (6)0.0160 (6)0.0131 (6)0.0016 (5)0.0009 (5)−0.0002 (5)
C7B0.0164 (6)0.0166 (6)0.0140 (6)0.0000 (5)0.0005 (5)−0.0008 (5)
C8B0.0151 (6)0.0153 (6)0.0152 (6)0.0011 (5)0.0014 (5)0.0000 (5)
C9B0.0139 (6)0.0232 (7)0.0206 (7)−0.0019 (5)−0.0013 (5)−0.0009 (5)
O1A—C2A1.3626 (19)O1B—C2B1.3651 (18)
O1A—C9A1.429 (2)O1B—C9B1.4370 (19)
O2A—C3A1.3630 (19)O2B—C3B1.3717 (19)
O2A—H2OA0.86 (3)O2B—H1OB0.83 (3)
O3A—C8A1.2458 (19)O3B—C8B1.2511 (18)
N1A—C7A1.285 (2)N1B—C7B1.290 (2)
N1A—N2A1.3801 (19)N1B—N2B1.3772 (18)
N2A—C8A1.368 (2)N2B—C8B1.3661 (19)
N2A—H2NA0.88 (3)N2B—H2NB0.90 (3)
N3A—C8A1.339 (2)N3B—C8B1.341 (2)
N3A—H3NA0.83 (3)N3B—H3ND0.86 (3)
N3A—H3NB0.89 (3)N3B—H3NC0.85 (3)
C1A—C2A1.384 (2)C1B—C2B1.385 (2)
C1A—C6A1.406 (2)C1B—C6B1.411 (2)
C1A—H1A0.9500C1B—H1B0.9500
C2A—C3A1.410 (2)C2B—C3B1.410 (2)
C3A—C4A1.381 (2)C3B—C4B1.380 (2)
C4A—C5A1.399 (2)C4B—C5B1.395 (2)
C4A—H4A0.9500C4B—H4B0.9500
C5A—C6A1.392 (2)C5B—C6B1.393 (2)
C5A—H5A0.9500C5B—H5B0.9500
C6A—C7A1.462 (2)C6B—C7B1.457 (2)
C7A—H7A0.9500C7B—H7B0.9500
C9A—H9AA0.9800C9B—H9BA0.9800
C9A—H9AB0.9800C9B—H9BB0.9800
C9A—H9AC0.9800C9B—H9BC0.9800
C2A—O1A—C9A117.26 (12)C2B—O1B—C9B117.40 (12)
C3A—O2A—H2OA108 (2)C3B—O2B—H1OB109.6 (19)
C7A—N1A—N2A114.92 (13)C7B—N1B—N2B114.11 (13)
C8A—N2A—N1A120.12 (13)C8B—N2B—N1B121.10 (13)
C8A—N2A—H2NA117.1 (19)C8B—N2B—H2NB117.9 (17)
N1A—N2A—H2NA121.3 (18)N1B—N2B—H2NB120.4 (17)
C8A—N3A—H3NA119 (2)C8B—N3B—H3ND120.2 (17)
C8A—N3A—H3NB119.9 (17)C8B—N3B—H3NC118.5 (19)
H3NA—N3A—H3NB117 (3)H3ND—N3B—H3NC119 (2)
C2A—C1A—C6A119.54 (14)C2B—C1B—C6B119.62 (13)
C2A—C1A—H1A120.2C2B—C1B—H1B120.2
C6A—C1A—H1A120.2C6B—C1B—H1B120.2
O1A—C2A—C1A126.19 (13)O1B—C2B—C1B126.52 (13)
O1A—C2A—C3A113.11 (13)O1B—C2B—C3B113.67 (13)
C1A—C2A—C3A120.70 (14)C1B—C2B—C3B119.82 (13)
O2A—C3A—C4A120.61 (14)O2B—C3B—C4B119.08 (13)
O2A—C3A—C2A119.82 (14)O2B—C3B—C2B120.34 (13)
C4A—C3A—C2A119.54 (14)C4B—C3B—C2B120.56 (14)
C3A—C4A—C5A120.05 (14)C3B—C4B—C5B119.78 (14)
C3A—C4A—H4A120.0C3B—C4B—H4B120.1
C5A—C4A—H4A120.0C5B—C4B—H4B120.1
C6A—C5A—C4A120.52 (14)C6B—C5B—C4B120.33 (14)
C6A—C5A—H5A119.7C6B—C5B—H5B119.8
C4A—C5A—H5A119.7C4B—C5B—H5B119.8
C5A—C6A—C1A119.62 (14)C5B—C6B—C1B119.88 (14)
C5A—C6A—C7A119.20 (14)C5B—C6B—C7B117.75 (14)
C1A—C6A—C7A121.15 (14)C1B—C6B—C7B122.30 (14)
N1A—C7A—C6A121.20 (14)N1B—C7B—C6B122.82 (14)
N1A—C7A—H7A119.4N1B—C7B—H7B118.6
C6A—C7A—H7A119.4C6B—C7B—H7B118.6
O3A—C8A—N3A123.75 (15)O3B—C8B—N3B123.62 (15)
O3A—C8A—N2A118.88 (14)O3B—C8B—N2B118.94 (14)
N3A—C8A—N2A117.36 (14)N3B—C8B—N2B117.42 (14)
O1A—C9A—H9AA109.5O1B—C9B—H9BA109.5
O1A—C9A—H9AB109.5O1B—C9B—H9BB109.5
H9AA—C9A—H9AB109.5H9BA—C9B—H9BB109.5
O1A—C9A—H9AC109.5O1B—C9B—H9BC109.5
H9AA—C9A—H9AC109.5H9BA—C9B—H9BC109.5
H9AB—C9A—H9AC109.5H9BB—C9B—H9BC109.5
C7A—N1A—N2A—C8A173.09 (15)C7B—N1B—N2B—C8B−175.20 (15)
C9A—O1A—C2A—C1A−1.7 (2)C9B—O1B—C2B—C1B3.9 (2)
C9A—O1A—C2A—C3A178.26 (14)C9B—O1B—C2B—C3B−175.85 (14)
C6A—C1A—C2A—O1A178.16 (15)C6B—C1B—C2B—O1B−178.73 (14)
C6A—C1A—C2A—C3A−1.8 (2)C6B—C1B—C2B—C3B1.0 (2)
O1A—C2A—C3A—O2A0.6 (2)O1B—C2B—C3B—O2B1.3 (2)
C1A—C2A—C3A—O2A−179.49 (14)C1B—C2B—C3B—O2B−178.42 (14)
O1A—C2A—C3A—C4A−177.67 (14)O1B—C2B—C3B—C4B179.73 (14)
C1A—C2A—C3A—C4A2.3 (2)C1B—C2B—C3B—C4B0.0 (2)
O2A—C3A—C4A—C5A−179.16 (15)O2B—C3B—C4B—C5B177.80 (14)
C2A—C3A—C4A—C5A−0.9 (2)C2B—C3B—C4B—C5B−0.6 (2)
C3A—C4A—C5A—C6A−0.9 (2)C3B—C4B—C5B—C6B0.3 (2)
C4A—C5A—C6A—C1A1.3 (2)C4B—C5B—C6B—C1B0.7 (2)
C4A—C5A—C6A—C7A179.36 (15)C4B—C5B—C6B—C7B−176.57 (14)
C2A—C1A—C6A—C5A0.0 (2)C2B—C1B—C6B—C5B−1.3 (2)
C2A—C1A—C6A—C7A−177.99 (15)C2B—C1B—C6B—C7B175.81 (14)
N2A—N1A—C7A—C6A176.29 (14)N2B—N1B—C7B—C6B−175.18 (14)
C5A—C6A—C7A—N1A176.93 (15)C5B—C6B—C7B—N1B177.73 (15)
C1A—C6A—C7A—N1A−5.1 (2)C1B—C6B—C7B—N1B0.6 (2)
N1A—N2A—C8A—O3A179.13 (15)N1B—N2B—C8B—O3B−178.70 (15)
N1A—N2A—C8A—N3A0.4 (2)N1B—N2B—C8B—N3B−0.3 (2)
D—H···AD—HH···AD···AD—H···A
O2A—H2OA···O2Bi0.86 (3)2.22 (3)2.9924 (18)149 (3)
N2A—H2NA···O3B0.88 (3)2.03 (3)2.8966 (19)171 (3)
N3A—H3NB···O3Bii0.89 (3)2.10 (3)2.961 (2)165 (2)
N2B—H2NB···O3A0.90 (3)2.00 (3)2.8812 (18)169 (2)
N3B—H3ND···O3Aiii0.86 (3)2.09 (3)2.9415 (19)172 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2A—H2OA⋯O2Bi0.86 (3)2.22 (3)2.9924 (18)149 (3)
N2A—H2NA⋯O3B0.88 (3)2.03 (3)2.8966 (19)171 (3)
N3A—H3NB⋯O3Bii0.89 (3)2.10 (3)2.961 (2)165 (2)
N2B—H2NB⋯O3A0.90 (3)2.00 (3)2.8812 (18)169 (2)
N3B—H3ND⋯O3Aiii0.86 (3)2.09 (3)2.9415 (19)172 (3)

Symmetry codes: (i) ; (ii) ; (iii) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
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2.  Spectroscopic and biological studies on newly synthesized nickel(II) complexes of semicarbazones and thiosemicarbazones.

Authors:  Sulekh Chandra; Lokesh Kumar Gupta
Journal:  Spectrochim Acta A Mol Biomol Spectrosc       Date:  2005-09-06       Impact factor: 4.098

3.  4-Substituted semicarbazones of mono- and dichlorobenzaldehydes as antihypertensive agents.

Authors:  J D Warren; D L Woodward; R T Hargreaves
Journal:  J Med Chem       Date:  1977-11       Impact factor: 7.446

4.  4-sulphamoylphenyl semicarbazones with anticonvulsant activity.

Authors:  P Yogeeswari; D Sriram; S N Pandeya; J P Stables
Journal:  Farmaco       Date:  2004-08

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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1.  2-[(E)-3,4-Dimeth-oxy-benzyl-idene]hydrazinecarboxamide.

Authors:  M Nawaz Tahir; M Naveed Umar; Akbar Ali; Hazoor Ahmad Shad
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-16
  1 in total

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