Literature DB >> 21837158

2,6-Dichloro-3-nitro-pyridine.

Hoong-Kun Fun, Suhana Arshad, B Chandrakantha, Arun M Isloor, Prakash Shetty.   

Abstract

The asymmetric unit of the title compound, C(5)H(2)Cl(2)N(2)O(2), consists of two crystallographically independent mol-ecules. The pyridine ring in each mol-ecule is essentially planar, with maximum deviations of 0.004 (4) and 0.007 (4) Å. Short Cl⋯O [3.09 (3) and 3.13 (4) Å] and Cl⋯Cl [3.38 (12) Å] contacts were observed. No significant inter-molecular inter-actions were observed in the crystal packing.

Entities:  

Year:  2011        PMID: 21837158      PMCID: PMC3152078          DOI: 10.1107/S1600536811023683

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the role of the nitro­pyridine nucleus in the development of medicinal agents and in the field of agrochemicals, see: Davis et al. (1996 ▶). For the properties and use of pyridine derivatives, see: Vacher et al. (1998 ▶); Olah et al. (1980 ▶); Bare et al. (1989 ▶). For standard bond lengths, see: Allen et al. (1987 ▶). For the melting point, see: Johnson et al. (1967 ▶).

Experimental

Crystal data

C5H2Cl2N2O2 M = 192.99 Monoclinic, a = 7.9021 (8) Å b = 19.166 (2) Å c = 11.0987 (9) Å β = 122.072 (5)° V = 1424.4 (2) Å3 Z = 8 Mo Kα radiation μ = 0.85 mm−1 T = 296 K 0.40 × 0.27 × 0.24 mm

Data collection

Bruker SMART APEXII DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.727, T max = 0.821 16845 measured reflections 4817 independent reflections 2323 reflections with I > 2σ(I) R int = 0.060

Refinement

R[F 2 > 2σ(F 2)] = 0.067 wR(F 2) = 0.180 S = 1.08 4817 reflections 199 parameters H-atom parameters constrained Δρmax = 0.55 e Å−3 Δρmin = −0.42 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811023683/ng5183sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811023683/ng5183Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811023683/ng5183Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C5H2Cl2N2O2F(000) = 768
Mr = 192.99Dx = 1.800 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3419 reflections
a = 7.9021 (8) Åθ = 2.4–31.7°
b = 19.166 (2) ŵ = 0.85 mm1
c = 11.0987 (9) ÅT = 296 K
β = 122.072 (5)°Block, yellow
V = 1424.4 (2) Å30.40 × 0.27 × 0.24 mm
Z = 8
Bruker SMART APEXII DUO CCD area-detector diffractometer4817 independent reflections
Radiation source: fine-focus sealed tube2323 reflections with I > 2σ(I)
graphiteRint = 0.060
φ and ω scansθmax = 31.8°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −11→11
Tmin = 0.727, Tmax = 0.821k = −28→28
16845 measured reflectionsl = −16→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.067Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.180H-atom parameters constrained
S = 1.08w = 1/[σ2(Fo2) + (0.0527P)2 + 1.2999P] where P = (Fo2 + 2Fc2)/3
4817 reflections(Δ/σ)max = 0.001
199 parametersΔρmax = 0.55 e Å3
0 restraintsΔρmin = −0.42 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl1A0.51344 (18)0.68002 (5)0.26085 (12)0.0667 (3)
Cl2A0.49627 (16)0.91466 (4)0.03753 (9)0.0540 (3)
O1A0.6135 (4)1.00995 (14)0.4256 (3)0.0656 (8)
O2A0.4472 (5)1.01996 (13)0.1975 (3)0.0641 (8)
N1A0.5042 (4)0.80475 (13)0.1709 (3)0.0411 (6)
N2A0.5284 (4)0.98557 (14)0.3053 (3)0.0433 (6)
C1A0.5404 (5)0.87035 (18)0.4058 (3)0.0445 (8)
H1A0.55380.89260.48480.053*
C2A0.5356 (5)0.79924 (18)0.3979 (4)0.0463 (8)
H2A0.54360.77200.47010.056*
C3A0.5182 (5)0.76941 (15)0.2786 (3)0.0397 (7)
C4A0.5072 (5)0.87406 (15)0.1788 (3)0.0359 (7)
C5A0.5251 (5)0.90936 (15)0.2945 (3)0.0351 (7)
Cl1B1.01800 (19)0.67408 (5)0.25606 (12)0.0673 (3)
Cl2B0.98563 (15)0.91167 (5)0.03234 (9)0.0532 (3)
O1B0.9156 (5)1.00415 (15)0.3366 (3)0.0731 (9)
O2B1.1216 (5)1.01192 (14)0.2658 (3)0.0663 (8)
N1B1.0071 (4)0.79906 (13)0.1667 (3)0.0403 (6)
N2B1.0196 (5)0.97918 (15)0.2975 (3)0.0470 (7)
C1B1.0342 (5)0.86410 (18)0.4000 (3)0.0450 (8)
H1B1.04220.88630.47730.054*
C2B1.0342 (5)0.79259 (19)0.3928 (4)0.0481 (8)
H2B1.04210.76500.46460.058*
C3B1.0218 (5)0.76313 (16)0.2741 (3)0.0427 (8)
C4B1.0086 (5)0.86795 (16)0.1754 (3)0.0356 (7)
C5B1.0219 (5)0.90270 (16)0.2895 (3)0.0376 (7)
U11U22U33U12U13U23
Cl1A0.0972 (8)0.0347 (4)0.0768 (7)0.0060 (5)0.0521 (7)0.0129 (4)
Cl2A0.0868 (7)0.0430 (4)0.0416 (5)−0.0036 (4)0.0405 (5)0.0053 (3)
O1A0.085 (2)0.0609 (17)0.0551 (16)−0.0130 (15)0.0404 (16)−0.0206 (13)
O2A0.093 (2)0.0406 (13)0.0633 (17)0.0096 (13)0.0444 (17)0.0094 (12)
N1A0.0520 (18)0.0343 (12)0.0418 (15)0.0003 (12)0.0281 (14)0.0016 (11)
N2A0.0494 (17)0.0377 (13)0.0509 (17)−0.0023 (12)0.0321 (15)−0.0046 (12)
C1A0.049 (2)0.056 (2)0.0346 (17)0.0028 (16)0.0257 (17)0.0035 (14)
C2A0.050 (2)0.055 (2)0.0391 (18)0.0067 (16)0.0274 (17)0.0137 (15)
C3A0.0457 (19)0.0331 (14)0.0429 (18)0.0047 (13)0.0252 (17)0.0086 (13)
C4A0.0435 (19)0.0332 (14)0.0329 (16)0.0010 (13)0.0215 (15)0.0025 (11)
C5A0.0392 (18)0.0337 (14)0.0353 (16)0.0015 (13)0.0218 (14)0.0012 (12)
Cl1B0.0970 (9)0.0390 (5)0.0691 (7)0.0050 (5)0.0463 (6)0.0105 (4)
Cl2B0.0762 (7)0.0501 (5)0.0381 (4)−0.0015 (4)0.0335 (5)0.0079 (3)
O1B0.084 (2)0.0648 (18)0.093 (2)0.0032 (15)0.062 (2)−0.0159 (16)
O2B0.093 (2)0.0517 (15)0.0721 (18)−0.0135 (15)0.0556 (18)−0.0038 (13)
N1B0.0452 (16)0.0392 (14)0.0387 (15)0.0028 (12)0.0238 (13)0.0050 (11)
N2B0.0530 (18)0.0447 (15)0.0421 (16)−0.0030 (14)0.0244 (15)−0.0050 (12)
C1B0.051 (2)0.0542 (19)0.0355 (17)−0.0033 (16)0.0268 (17)−0.0007 (14)
C2B0.052 (2)0.059 (2)0.0369 (18)−0.0006 (17)0.0255 (17)0.0104 (15)
C3B0.046 (2)0.0391 (16)0.0417 (19)0.0036 (14)0.0224 (17)0.0085 (14)
C4B0.0360 (18)0.0426 (16)0.0296 (15)0.0014 (13)0.0183 (14)0.0045 (12)
C5B0.0385 (18)0.0420 (16)0.0358 (16)−0.0011 (14)0.0221 (15)0.0013 (13)
Cl1A—C3A1.723 (3)Cl1B—C3B1.717 (3)
Cl2A—C4A1.711 (3)Cl2B—C4B1.717 (3)
O1A—N2A1.224 (3)O1B—N2B1.214 (4)
O2A—N2A1.209 (4)O2B—N2B1.211 (4)
N1A—C4A1.331 (4)N1B—C4B1.323 (4)
N1A—C3A1.326 (4)N1B—C3B1.327 (4)
N2A—C5A1.465 (4)N2B—C5B1.469 (4)
C1A—C2A1.365 (5)C1B—C2B1.373 (5)
C1A—C5A1.393 (4)C1B—C5B1.391 (4)
C1A—H1A0.9300C1B—H1B0.9300
C2A—C3A1.381 (5)C2B—C3B1.389 (5)
C2A—H2A0.9300C2B—H2B0.9300
C4A—C5A1.391 (4)C4B—C5B1.385 (4)
C4A—N1A—C3A117.4 (3)C4B—N1B—C3B117.3 (3)
O2A—N2A—O1A124.5 (3)O2B—N2B—O1B125.5 (3)
O2A—N2A—C5A119.0 (3)O2B—N2B—C5B117.9 (3)
O1A—N2A—C5A116.5 (3)O1B—N2B—C5B116.6 (3)
C2A—C1A—C5A119.5 (3)C2B—C1B—C5B118.8 (3)
C2A—C1A—H1A120.2C2B—C1B—H1B120.6
C5A—C1A—H1A120.2C5B—C1B—H1B120.6
C1A—C2A—C3A117.4 (3)C1B—C2B—C3B117.3 (3)
C1A—C2A—H2A121.3C1B—C2B—H2B121.4
C3A—C2A—H2A121.3C3B—C2B—H2B121.4
N1A—C3A—C2A124.8 (3)N1B—C3B—C2B124.7 (3)
N1A—C3A—Cl1A114.8 (2)N1B—C3B—Cl1B115.0 (3)
C2A—C3A—Cl1A120.4 (2)C2B—C3B—Cl1B120.2 (3)
N1A—C4A—C5A122.4 (3)N1B—C4B—C5B122.7 (3)
N1A—C4A—Cl2A113.8 (2)N1B—C4B—Cl2B115.3 (2)
C5A—C4A—Cl2A123.8 (2)C5B—C4B—Cl2B122.0 (2)
C1A—C5A—C4A118.4 (3)C4B—C5B—C1B119.1 (3)
C1A—C5A—N2A118.2 (3)C4B—C5B—N2B122.5 (3)
C4A—C5A—N2A123.3 (3)C1B—C5B—N2B118.4 (3)
C5A—C1A—C2A—C3A0.9 (5)C5B—C1B—C2B—C3B0.0 (5)
C4A—N1A—C3A—C2A0.0 (5)C4B—N1B—C3B—C2B1.5 (5)
C4A—N1A—C3A—Cl1A−180.0 (3)C4B—N1B—C3B—Cl1B179.7 (2)
C1A—C2A—C3A—N1A−0.6 (6)C1B—C2B—C3B—N1B−1.1 (6)
C1A—C2A—C3A—Cl1A179.4 (3)C1B—C2B—C3B—Cl1B−179.2 (3)
C3A—N1A—C4A—C5A0.3 (5)C3B—N1B—C4B—C5B−0.9 (5)
C3A—N1A—C4A—Cl2A178.0 (2)C3B—N1B—C4B—Cl2B−179.1 (2)
C2A—C1A—C5A—C4A−0.6 (5)N1B—C4B—C5B—C1B0.0 (5)
C2A—C1A—C5A—N2A179.3 (3)Cl2B—C4B—C5B—C1B178.1 (3)
N1A—C4A—C5A—C1A0.0 (5)N1B—C4B—C5B—N2B−178.8 (3)
Cl2A—C4A—C5A—C1A−177.5 (3)Cl2B—C4B—C5B—N2B−0.7 (5)
N1A—C4A—C5A—N2A−179.9 (3)C2B—C1B—C5B—C4B0.5 (5)
Cl2A—C4A—C5A—N2A2.6 (5)C2B—C1B—C5B—N2B179.3 (3)
O2A—N2A—C5A—C1A−153.8 (3)O2B—N2B—C5B—C4B−44.8 (5)
O1A—N2A—C5A—C1A25.6 (4)O1B—N2B—C5B—C4B135.7 (4)
O2A—N2A—C5A—C4A26.1 (5)O2B—N2B—C5B—C1B136.4 (3)
O1A—N2A—C5A—C4A−154.5 (3)O1B—N2B—C5B—C1B−43.0 (5)
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4.  Substituted (pyrroloamino)pyridines: potential agents for the treatment of Alzheimer's disease.

Authors:  L Davis; G E Olsen; J T Klein; K J Kapples; F P Huger; C P Smith; W W Petko; M Cornfeldt; R C Effland
Journal:  J Med Chem       Date:  1996-01-19       Impact factor: 7.446

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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1.  2,3,6-Trichloro-5-(trichloro-meth-yl)pyridine.

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