Literature DB >> 22969607

2,3,6-Trichloro-5-(trichloro-meth-yl)pyridine.

Xue-Mei Zhu, Li-Jun Pei, Zhao-Sheng Cai, Zhan-Qian Song, Shi-Bin Shang.   

Abstract

The title compound, C(6)HCl(6)N, lies on a mirror plane, the asymmetric unit conataining a half-mol-ecule. Weak intra-molecular C-H⋯Cl contacts are observed.

Entities:  

Year:  2012        PMID: 22969607      PMCID: PMC3435736          DOI: 10.1107/S1600536812035404

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For biological background, see: Okorley & Dietsche (1988 ▶). For the synthetic procedure, see: Allphin et al. (1993 ▶); For a related structure, see: Fun et al. (2011 ▶).

Experimental

Crystal data

C6HCl6N M = 299.78 Orthorhombic, a = 8.3100 (17) Å b = 17.018 (3) Å c = 7.3160 (15) Å V = 1034.6 (4) Å3 Z = 4 Mo Kα radiation μ = 1.61 mm−1 T = 293 K 0.30 × 0.20 × 0.20 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.644, T max = 0.739 1985 measured reflections 1033 independent reflections 779 reflections with I > 2σ(I) R int = 0.063 3 standard reflections every 200 reflections intensity decay: 1%

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.123 S = 1.01 1033 reflections 77 parameters H-atom parameters constrained Δρmax = 0.26 e Å−3 Δρmin = −0.39 e Å−3 Data collection: CAD-4 Software (Enraf–Nonius, 1985 ▶); cell refinement: CAD-4 Software; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812035404/pv2577sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812035404/pv2577Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812035404/pv2577Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6HCl6NF(000) = 584
Mr = 299.78Dx = 1.925 Mg m3
Orthorhombic, PbcmMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2c 2bCell parameters from 25 reflections
a = 8.3100 (17) Åθ = 10–13°
b = 17.018 (3) ŵ = 1.61 mm1
c = 7.3160 (15) ÅT = 293 K
V = 1034.6 (4) Å3Block, colorless
Z = 40.30 × 0.20 × 0.20 mm
Enraf–Nonius CAD-4 diffractometer779 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.063
Graphite monochromatorθmax = 25.4°, θmin = 2.4°
ω/2θ scansh = −10→10
Absorption correction: ψ scan (North et al., 1968)k = −20→0
Tmin = 0.644, Tmax = 0.739l = −8→0
1985 measured reflections3 standard reflections every 200 reflections
1033 independent reflections intensity decay: 1%
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.040H-atom parameters constrained
wR(F2) = 0.123w = 1/[σ2(Fo2) + (0.078P)2] where P = (Fo2 + 2Fc2)/3
S = 1.01(Δ/σ)max = 0.001
1033 reflectionsΔρmax = 0.26 e Å3
77 parametersΔρmin = −0.39 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.077 (6)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N0.5025 (5)0.4324 (2)0.25000.0467 (9)
Cl10.8417 (2)0.26884 (8)0.25000.0806 (6)
C10.8339 (6)0.4268 (3)0.25000.0478 (11)
H1A0.94570.42410.25000.057*
Cl20.45826 (19)0.28195 (8)0.25000.0753 (5)
C20.7445 (7)0.3584 (3)0.25000.0537 (12)
Cl30.47402 (13)0.58193 (7)0.25000.0569 (4)
C30.5783 (6)0.3642 (3)0.25000.0486 (11)
Cl40.81252 (10)0.63147 (5)0.05227 (15)0.0619 (4)
C40.5902 (5)0.4969 (2)0.25000.0399 (10)
Cl51.06686 (13)0.55710 (8)0.25000.0672 (5)
C50.7586 (5)0.4991 (2)0.25000.0418 (10)
C60.8554 (5)0.5748 (2)0.25000.0451 (11)
U11U22U33U12U13U23
N0.0472 (18)0.042 (2)0.051 (2)−0.0058 (15)0.0000.000
Cl10.1128 (13)0.0423 (7)0.0867 (11)0.0263 (7)0.0000.000
C10.051 (3)0.042 (2)0.051 (3)0.0113 (19)0.0000.000
Cl20.0977 (11)0.0433 (7)0.0849 (10)−0.0220 (6)0.0000.000
C20.075 (3)0.042 (2)0.044 (2)0.014 (2)0.0000.000
Cl30.0372 (6)0.0463 (7)0.0872 (10)0.0073 (4)0.0000.000
C30.061 (3)0.043 (2)0.042 (2)−0.009 (2)0.0000.000
Cl40.0572 (5)0.0552 (6)0.0734 (7)0.0006 (3)0.0064 (5)0.0182 (4)
C40.039 (2)0.034 (2)0.046 (2)0.0056 (17)0.0000.000
Cl50.0334 (6)0.0666 (8)0.1018 (12)0.0007 (5)0.0000.000
C50.041 (2)0.040 (2)0.044 (2)−0.0008 (18)0.0000.000
C60.036 (2)0.039 (2)0.061 (3)0.0008 (17)0.0000.000
N—C41.318 (6)C2—C31.385 (8)
N—C31.321 (6)Cl3—C41.739 (4)
Cl1—C21.724 (5)Cl4—C61.774 (3)
C1—C21.381 (7)C4—C51.400 (6)
C1—C51.381 (6)Cl5—C61.783 (5)
C1—H1A0.9300C5—C61.519 (6)
Cl2—C31.719 (4)C6—Cl4i1.774 (3)
C4—N—C3118.0 (4)N—C4—Cl3112.7 (3)
C2—C1—C5120.5 (4)C5—C4—Cl3122.2 (3)
C2—C1—H1A119.7C1—C5—C4115.4 (4)
C5—C1—H1A119.7C1—C5—C6121.1 (4)
C1—C2—C3118.4 (4)C4—C5—C6123.5 (4)
C1—C2—Cl1119.6 (4)C5—C6—Cl4110.77 (18)
C3—C2—Cl1122.0 (4)C5—C6—Cl4i110.77 (18)
N—C3—C2122.6 (4)Cl4—C6—Cl4i109.2 (2)
N—C3—Cl2116.0 (4)C5—C6—Cl5112.2 (3)
C2—C3—Cl2121.4 (4)Cl4—C6—Cl5106.84 (17)
N—C4—C5125.1 (4)Cl4i—C6—Cl5106.84 (17)
C5—C1—C2—C30.0C2—C1—C5—C6180.0
C5—C1—C2—Cl1180.0N—C4—C5—C10.0
C4—N—C3—C20.0Cl3—C4—C5—C1180.0
C4—N—C3—Cl2180.0N—C4—C5—C6180.0
C1—C2—C3—N0.0Cl3—C4—C5—C60.0
Cl1—C2—C3—N180.0C1—C5—C6—Cl4119.32 (19)
C1—C2—C3—Cl2180.0C4—C5—C6—Cl4−60.68 (19)
Cl1—C2—C3—Cl20.0C1—C5—C6—Cl4i−119.32 (19)
C3—N—C4—C50.0C4—C5—C6—Cl4i60.68 (19)
C3—N—C4—Cl3180.0C1—C5—C6—Cl50.0
C2—C1—C5—C40.0C4—C5—C6—Cl5180.0
D—H···AD—HH···AD···AD—H···A
C1—H1A···Cl50.932.482.944 (5)111
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C1—H1A⋯Cl50.932.482.944 (5)111
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