Literature DB >> 21837072

3,6-Didehydro-5-hy-droxy-1,2-O-iso-propyl-idene-5-C-nitro-meth-yl-α-d-gluco-furan-ose.

Qiurong Zhang1, Pan Li, Xuebin Chen, Xiandong Wang, Hongmin Liu.   

Abstract

The title compound, C(10)H(15)NO(7), consists of one methyl-enedi-oxy ring and two fused tetra-hydro-furan rings. The three fused rings exhibit cis arrangements at the ring junctions. One O atom of a tetra-hydro-furan ring and the H atoms bound to the neighboring C atoms are disordered over two orientations with site-occupancy factors of 0.69 (1) and 0.31 (1). intra-molecular O-H⋯O and C-H⋯O inter-actions stabilize the mol-ecular conformation. In the crystal structure, inter-molecular O-H⋯O and C-H⋯O inter-actions link the mol-ecules into a three-dimensional network.

Entities:  

Year:  2011        PMID: 21837072      PMCID: PMC3151982          DOI: 10.1107/S160053681102191X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of aza­sugars, see: Choi et al. (1991 ▶); Kvaernø et al. (2001 ▶). For the Henry reaction used to obtain the title compound, see: Saito et al. (2002 ▶). For research on carbohydrates and aza­sugars, see: Liu et al. (2004 ▶); Ke et al. (2009 ▶); Zhang et al. (2011 ▶). For a similar structure, see: Zhang & Yang (2010 ▶).

Experimental

Crystal data

C10H15NO7 M = 261.23 Orthorhombic, a = 5.63290 (13) Å b = 8.36405 (15) Å c = 25.4014 (5) Å V = 1196.76 (4) Å3 Z = 4 Cu Kα radiation μ = 1.07 mm−1 T = 291 K 0.24 × 0.22 × 0.20 mm

Data collection

Bruker SMART diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.783, T max = 0.814 7427 measured reflections 2249 independent reflections 2161 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.053 wR(F 2) = 0.165 S = 1.08 2249 reflections 174 parameters 8 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.59 e Å−3 Δρmin = −0.43 e Å−3 Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681102191X/zq2104sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681102191X/zq2104Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H15NO7Dx = 1.450 Mg m3
Mr = 261.23Melting point = 392–394 K
Orthorhombic, P212121Cu Kα radiation, λ = 1.54184 Å
Hall symbol: P 2ac 2abCell parameters from 5453 reflections
a = 5.63290 (13) Åθ = 3.5–70.0°
b = 8.36405 (15) ŵ = 1.07 mm1
c = 25.4014 (5) ÅT = 291 K
V = 1196.76 (4) Å3Block, white
Z = 40.24 × 0.22 × 0.20 mm
F(000) = 552
Bruker SMART diffractometer2249 independent reflections
Radiation source: Enhance (Cu) X-ray Source2161 reflections with I > 2σ(I)
graphiteRint = 0.021
Detector resolution: 0 pixels mm-1θmax = 70.2°, θmin = 3.5°
ω scansh = −6→4
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)k = −9→10
Tmin = 0.783, Tmax = 0.814l = −29→30
7427 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.053Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.165H atoms treated by a mixture of independent and constrained refinement
S = 1.08w = 1/[σ2(Fo2) + (0.1069P)2 + 0.3286P] where P = (Fo2 + 2Fc2)/3
2249 reflections(Δ/σ)max < 0.001
174 parametersΔρmax = 0.59 e Å3
8 restraintsΔρmin = −0.43 e Å3
Experimental. Melting point: 119–121 °C; Rf = 0.67 (CHCl3/EtOAc, 7:3); 1H NMR (400 MHz, CDCl3) σ: 5.98 (d, J = 3.4 Hz, 1H), 4.81 (d, J = 4.3 Hz, 1H), 4.68 (d, J = 3.4 Hz, 1H), 4.60 (dd, J = 8.3, 4.0 Hz, 2H), 4.52 (d, J = 12.3 Hz, 1H), 3.83 (d, J = 10.0 Hz, 1H), 3.75 (d, J = 10.0 Hz, 1H), 3.36 (s, 1H), 1.51 (s, 3H), 1.36 (s, 3H); 13C NMR (100 MHz, CDCl3) σ: 113.60, 107.18, 85.35, 85.08, 83.80, 78.62, 78.42, 74.89, 27.49, 26.77.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
O10.8215 (5)−0.0074 (2)0.86303 (8)0.0635 (6)
O20.5738 (5)0.1567 (3)0.81809 (9)0.0693 (7)
O30.4254 (5)0.4145 (8)0.92867 (15)0.0833 (16)0.695 (10)
O3A0.4631 (15)0.3468 (10)0.93694 (15)0.0833 (16)0.305 (10)
O40.8877 (4)0.2199 (2)0.91272 (11)0.0726 (8)
O51.0074 (4)0.4587 (3)0.97889 (8)0.0526 (5)
H51.070 (10)0.374 (6)0.966 (2)0.113 (19)*
O61.1140 (5)0.6590 (3)0.86098 (10)0.0729 (7)
O71.2025 (5)0.7827 (3)0.93199 (11)0.0735 (7)
N11.0673 (5)0.7059 (3)0.90501 (9)0.0487 (6)
C10.7251 (6)0.1003 (3)0.89903 (10)0.0530 (7)
H10.66930.04400.93050.064*
C20.5231 (5)0.1803 (4)0.87177 (13)0.0598 (8)
H20.36810.13750.88220.072*
C30.5524 (6)0.3547 (5)0.88496 (14)0.0712 (11)
H3A0.51200.41860.85390.085*0.695 (10)
H3B0.47940.43250.86110.085*0.305 (10)
C40.8110 (5)0.3724 (3)0.89597 (11)0.0450 (6)
H40.90010.41200.86550.054*
C50.8201 (4)0.4884 (3)0.94342 (9)0.0378 (5)
C60.5819 (5)0.4568 (4)0.96985 (11)0.0517 (6)
H6A0.59530.37040.99520.062*0.695 (10)
H6B0.52590.55180.98790.062*0.695 (10)
H6C0.60480.41201.00470.062*0.305 (10)
H6D0.49150.55500.97300.062*0.305 (10)
C70.7269 (6)0.0235 (3)0.81191 (10)0.0488 (7)
C80.9245 (10)0.0693 (8)0.7760 (2)0.1050 (16)
H8A1.0428−0.01330.77610.157*
H8B0.99400.16770.78790.157*
H8C0.86400.08300.74100.157*
C90.5948 (9)−0.1217 (5)0.79390 (18)0.0830 (12)
H9A0.4567−0.13660.81550.125*
H9B0.6958−0.21380.79670.125*
H9C0.5471−0.10800.75790.125*
C100.8305 (5)0.6646 (3)0.92708 (11)0.0437 (6)
H10A0.70900.68560.90090.052*
H10B0.79850.73150.95750.052*
U11U22U33U12U13U23
O10.0991 (17)0.0435 (10)0.0480 (10)0.0213 (12)−0.0142 (12)−0.0086 (8)
O20.0906 (17)0.0641 (13)0.0533 (11)0.0267 (12)−0.0249 (12)−0.0142 (10)
O30.0301 (13)0.080 (4)0.140 (3)0.0168 (15)0.0027 (14)−0.075 (3)
O3A0.0301 (13)0.080 (4)0.140 (3)0.0168 (15)0.0027 (14)−0.075 (3)
O40.0591 (13)0.0422 (10)0.117 (2)0.0172 (10)−0.0355 (13)−0.0200 (12)
O50.0480 (10)0.0557 (12)0.0542 (11)0.0076 (9)−0.0076 (9)0.0032 (9)
O60.0897 (17)0.0640 (14)0.0650 (13)−0.0128 (13)0.0300 (13)−0.0073 (11)
O70.0693 (13)0.0674 (13)0.0836 (16)−0.0247 (13)−0.0016 (13)−0.0072 (12)
N10.0578 (14)0.0353 (10)0.0529 (12)−0.0020 (10)0.0079 (11)0.0004 (9)
C10.084 (2)0.0345 (12)0.0409 (13)−0.0002 (13)−0.0035 (14)−0.0024 (9)
C20.0429 (14)0.0694 (19)0.0670 (18)−0.0064 (14)−0.0001 (13)−0.0269 (15)
C30.0604 (19)0.073 (2)0.080 (2)0.0310 (17)−0.0269 (17)−0.0296 (18)
C40.0550 (15)0.0337 (11)0.0463 (13)0.0003 (11)0.0054 (12)−0.0045 (10)
C50.0377 (11)0.0358 (11)0.0398 (11)0.0029 (10)0.0024 (10)0.0019 (9)
C60.0494 (14)0.0501 (15)0.0556 (14)−0.0030 (12)0.0124 (12)−0.0011 (12)
C70.0614 (16)0.0471 (14)0.0380 (12)0.0021 (12)−0.0008 (12)−0.0023 (10)
C80.100 (3)0.133 (4)0.082 (3)−0.014 (3)0.033 (3)0.005 (3)
C90.096 (3)0.074 (2)0.079 (2)−0.011 (2)−0.014 (2)−0.0243 (19)
C100.0494 (13)0.0330 (11)0.0487 (12)0.0056 (10)0.0050 (12)−0.0011 (10)
O1—C11.394 (3)C3—H3A0.9800
O1—C71.427 (3)C3—H3B0.9800
O2—C21.407 (4)C4—C51.548 (3)
O2—C71.418 (4)C4—H40.9800
O3—C31.412 (3)C5—C61.524 (3)
O3—C61.413 (3)C5—C101.532 (3)
O3A—C61.412 (3)C6—H6A0.9700
O3A—C31.414 (3)C6—H6B0.9700
O4—C11.400 (4)C6—H6C0.9700
O4—C41.413 (3)C6—H6D0.9700
O5—C51.409 (3)C7—C81.488 (6)
O5—H50.86 (6)C7—C91.497 (5)
O6—N11.214 (3)C8—H8A0.9600
O7—N11.209 (3)C8—H8B0.9600
N1—C101.487 (4)C8—H8C0.9600
C1—C21.490 (5)C9—H9A0.9600
C1—H10.9800C9—H9B0.9600
C2—C31.506 (5)C9—H9C0.9600
C2—H20.9800C10—H10A0.9700
C3—C41.491 (4)C10—H10B0.9700
C1—O1—C7109.5 (2)C6—C5—C4101.8 (2)
C2—O2—C7109.9 (2)C10—C5—C4113.1 (2)
C3—O3—C6110.8 (2)O3A—C6—C5105.6 (3)
C6—O3A—C3110.7 (3)O3—C6—C5105.5 (2)
C1—O4—C4111.7 (2)O3A—C6—H6A86.8
C5—O5—H5102 (4)O3—C6—H6A110.6
O7—N1—O6123.9 (3)C5—C6—H6A110.6
O7—N1—C10118.3 (2)O3A—C6—H6B131.3
O6—N1—C10117.8 (2)O3—C6—H6B110.6
O1—C1—O4111.7 (3)C5—C6—H6B110.6
O1—C1—C2106.4 (2)H6A—C6—H6B108.8
O4—C1—C2107.1 (2)O3A—C6—H6C110.6
O1—C1—H1110.5O3—C6—H6C131.4
O4—C1—H1110.5C5—C6—H6C110.6
C2—C1—H1110.5H6B—C6—H6C85.9
O2—C2—C1103.5 (2)O3A—C6—H6D110.6
O2—C2—C3109.2 (3)O3—C6—H6D86.9
C1—C2—C3104.4 (2)C5—C6—H6D110.6
O2—C2—H2113.0H6A—C6—H6D128.1
C1—C2—H2113.0H6C—C6—H6D108.7
C3—C2—H2113.0O2—C7—O1105.6 (2)
O3—C3—C4108.2 (2)O2—C7—C8108.7 (3)
O3A—C3—C4100.2 (4)O1—C7—C8108.9 (3)
O3—C3—C2117.5 (4)O2—C7—C9111.7 (3)
O3A—C3—C297.1 (4)O1—C7—C9108.5 (3)
C4—C3—C2104.2 (2)C8—C7—C9113.2 (3)
O3—C3—H3A108.9C7—C8—H8A109.5
O3A—C3—H3A134.0C7—C8—H8B109.5
C4—C3—H3A108.9H8A—C8—H8B109.5
C2—C3—H3A108.9C7—C8—H8C109.5
O3—C3—H3B92.3H8A—C8—H8C109.5
O3A—C3—H3B117.4H8B—C8—H8C109.5
C4—C3—H3B117.4C7—C9—H9A109.5
C2—C3—H3B117.4C7—C9—H9B109.5
O4—C4—C3105.4 (3)H9A—C9—H9B109.5
O4—C4—C5108.7 (2)C7—C9—H9C109.5
C3—C4—C5103.9 (2)H9A—C9—H9C109.5
O4—C4—H4112.7H9B—C9—H9C109.5
C3—C4—H4112.7N1—C10—C5111.1 (2)
C5—C4—H4112.7N1—C10—H10A109.4
O5—C5—C6110.3 (2)C5—C10—H10A109.4
O5—C5—C10108.3 (2)N1—C10—H10B109.4
C6—C5—C10108.7 (2)C5—C10—H10B109.4
O5—C5—C4114.3 (2)H10A—C10—H10B108.0
C7—O1—C1—O4−104.4 (3)C2—C3—C4—C5−140.4 (3)
C7—O1—C1—C212.2 (3)O4—C4—C5—O534.3 (3)
C4—O4—C1—O1115.3 (3)C3—C4—C5—O5146.2 (3)
C4—O4—C1—C2−0.9 (4)O4—C4—C5—C6−84.7 (3)
C7—O2—C2—C122.4 (3)C3—C4—C5—C627.2 (3)
C7—O2—C2—C3133.2 (3)O4—C4—C5—C10158.9 (2)
O1—C1—C2—O2−20.9 (3)C3—C4—C5—C10−89.2 (3)
O4—C1—C2—O298.6 (3)C3—O3A—C6—O370.2 (3)
O1—C1—C2—C3−135.2 (3)C3—O3A—C6—C5−23.2 (8)
O4—C1—C2—C3−15.6 (3)C3—O3—C6—O3A−70.5 (3)
C6—O3—C3—O3A70.3 (3)C3—O3—C6—C523.6 (6)
C6—O3—C3—C4−5.4 (6)O5—C5—C6—O3A−125.5 (5)
C6—O3—C3—C2112.1 (4)C10—C5—C6—O3A115.9 (5)
C6—O3A—C3—O3−70.3 (3)C4—C5—C6—O3A−3.8 (5)
C6—O3A—C3—C440.3 (8)O5—C5—C6—O3−152.7 (3)
C6—O3A—C3—C2146.2 (7)C10—C5—C6—O388.7 (4)
O2—C2—C3—O3155.5 (3)C4—C5—C6—O3−31.0 (4)
C1—C2—C3—O3−94.4 (4)C2—O2—C7—O1−15.6 (3)
O2—C2—C3—O3A172.8 (5)C2—O2—C7—C8−132.3 (3)
C1—C2—C3—O3A−77.1 (5)C2—O2—C7—C9102.1 (3)
O2—C2—C3—C4−84.8 (3)C1—O1—C7—O21.4 (3)
C1—C2—C3—C425.3 (4)C1—O1—C7—C8118.0 (4)
C1—O4—C4—C317.3 (3)C1—O1—C7—C9−118.4 (3)
C1—O4—C4—C5128.2 (3)O7—N1—C10—C5−104.9 (3)
O3—C3—C4—O499.7 (4)O6—N1—C10—C574.5 (3)
O3A—C3—C4—O474.0 (4)O5—C5—C10—N155.5 (3)
C2—C3—C4—O4−26.1 (3)C6—C5—C10—N1175.3 (2)
O3—C3—C4—C5−14.6 (5)C4—C5—C10—N1−72.4 (3)
O3A—C3—C4—C5−40.3 (4)
D—H···AD—HH···AD···AD—H···A
O5—H5···O40.86 (6)2.13 (6)2.696 (3)123 (5)
O5—H5···O3i0.86 (6)2.24 (6)2.703 (3)114 (4)
C1—H1···O5ii0.982.483.371 (3)152
C4—H4···O60.982.393.074 (4)126
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O5—H5⋯O40.86 (6)2.13 (6)2.696 (3)123 (5)
O5—H5⋯O3i0.86 (6)2.24 (6)2.703 (3)114 (4)
C1—H1⋯O5ii0.982.483.371 (3)152
C4—H4⋯O60.982.393.074 (4)126

Symmetry codes: (i) ; (ii) .

  5 in total

1.  Synthesis of a novel bicyclic nucleoside restricted to an S-type conformation and initial evaluation of its hybridization properties when incorporated into oligodeoxynucleotides.

Authors:  L Kvaernø; R H Wightman; J Wengel
Journal:  J Org Chem       Date:  2001-07-27       Impact factor: 4.354

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  A facile approach to anhydrogalactosucrose derivatives from chlorinated sucrose.

Authors:  Feng-Wu Liu; Hong-Min Liu; Yu Ke; Jingyu Zhang
Journal:  Carbohydr Res       Date:  2004-11-15       Impact factor: 2.104

4.  (3R,3aS,6R,6aR)-3-(1-Nitro-eth-yl)perhydro-furo[3,2-b]furan-3,6-diol.

Authors:  Jing-Yu Zhang; Jing Yang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-18

5.  1,2;5,6-Di-O-isopropyl-idene-3-C-nitro-methyl-α-d-allofuran-ose.

Authors:  Qiurong Zhang; Yu Ke; Weiyan Cheng; Pengyun Li; Hongmin Liu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-14
  5 in total
  1 in total

1.  3,5-Di-O-benzoyl-1,2-O-isopropyl-idene-α-d-ribo-hexos-3-ulo-1,4:3,6-difuran-ose.

Authors:  Qiurong Zhang; Xuebin Chen; Nan Zhu; Tengfei Jiang; Hongmin Liu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-06-25
  1 in total

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