Literature DB >> 21837173

3,5-Di-O-benzoyl-1,2-O-isopropyl-idene-α-d-ribo-hexos-3-ulo-1,4:3,6-difuran-ose.

Qiurong Zhang1, Xuebin Chen, Nan Zhu, Tengfei Jiang, Hongmin Liu.   

Abstract

The title compound, C(23)H(22)O(8), is a binary benzoyl ester whose nucleus consists of a fused system made up of a methyl-enedi-oxy ring and two tetra-hydro-furan rings. One of the benzoyl ester groups is attached at the junction of the two tetra-hydro-furan rings. The other is attached to the outer tetra-furan ring. Both the benzoyl ester groups are in an axial conformation with respect to the outer tetrhydro-furan ring. In the crystal, mol-ecules are linked by two weak C-H⋯O hydrogen bonds, forming a chain running parallel to the a axis.

Entities:  

Year:  2011        PMID: 21837173      PMCID: PMC3151936          DOI: 10.1107/S1600536811024317

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details of the synthesis and absolute configuration of the nucleus, see: Tronchet & Bourgeois (1971 ▶). For applications of the nucleus, see: Xavier et al. (2009 ▶); Rajwanshi et al. (1999 ▶). For structure of a bicyclo-glycosyl compound, see: Zhang et al. (2011 ▶).

Experimental

Crystal data

C23H22O8 M = 426.41 Orthorhombic, a = 6.05837 (10) Å b = 8.33827 (14) Å c = 40.9992 (7) Å V = 2071.13 (6) Å3 Z = 4 Cu Kα radiation μ = 0.87 mm−1 T = 291 K 0.30 × 0.30 × 0.25 mm

Data collection

Agilent Xcalibur Eos Gemini diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.780, T max = 0.812 10556 measured reflections 2421 independent reflections 2335 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.094 S = 1.06 2421 reflections 282 parameters H-atom parameters constrained Δρmax = 0.19 e Å−3 Δρmin = −0.26 e Å−3 Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: OLEX2. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811024317/lw2067sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811024317/lw2067Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C23H22O8Dx = 1.367 Mg m3
Mr = 426.41Melting point = 459–460 K
Orthorhombic, P212121Cu Kα radiation, λ = 1.5418 Å
a = 6.05837 (10) ÅCell parameters from 5890 reflections
b = 8.33827 (14) Åθ = 3.2–72.3°
c = 40.9992 (7) ŵ = 0.87 mm1
V = 2071.13 (6) Å3T = 291 K
Z = 4Prism, colourless
F(000) = 8960.30 × 0.30 × 0.25 mm
Agilent Xcalibur Eos Gemini diffractometer2421 independent reflections
Radiation source: Enhance (Cu) X-ray Source2335 reflections with I > 2σ(I)
graphiteRint = 0.026
Detector resolution: 16.2312 pixels mm-1θmax = 72.3°, θmin = 4.3°
ω scansh = −7→7
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = −9→10
Tmin = 0.780, Tmax = 0.812l = −21→50
10556 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.094H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0643P)2 + 0.1182P] where P = (Fo2 + 2Fc2)/3
2421 reflections(Δ/σ)max = 0.001
282 parametersΔρmax = 0.19 e Å3
0 restraintsΔρmin = −0.26 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.7379 (3)1.23548 (17)0.88731 (3)0.0556 (4)
O20.8454 (3)1.07286 (15)0.84526 (3)0.0553 (4)
O30.7285 (2)0.70109 (16)0.88507 (3)0.0458 (3)
O40.4603 (2)1.04625 (17)0.88971 (3)0.0460 (3)
O50.4346 (2)0.82295 (17)0.93608 (3)0.0462 (3)
O60.1023 (3)0.9393 (3)0.94092 (4)0.0694 (5)
O70.6458 (2)0.78758 (16)0.83253 (3)0.0396 (3)
O81.0139 (2)0.75343 (19)0.82694 (3)0.0477 (3)
C10.6881 (4)1.0796 (2)0.89615 (4)0.0436 (4)
H10.72611.05860.91900.052*
C20.8210 (3)0.9737 (2)0.87294 (4)0.0388 (3)
H20.96290.94010.88220.047*
C30.6676 (3)0.8329 (2)0.86608 (4)0.0359 (3)
C40.4365 (3)0.8886 (2)0.87778 (4)0.0395 (4)
H40.33020.88550.85980.047*
C50.3748 (4)0.7633 (2)0.90435 (4)0.0469 (4)
H50.21920.73160.90320.056*
C60.5277 (4)0.6267 (2)0.89661 (5)0.0576 (6)
H6B0.55620.56280.91590.069*
H6A0.46470.55810.87990.069*
C70.8226 (4)1.2368 (2)0.85457 (4)0.0457 (4)
C80.6599 (5)1.3136 (4)0.83165 (6)0.0666 (6)
H8C0.63631.42310.83800.100*
H8B0.52251.25640.83250.100*
H8A0.71701.31020.80980.100*
C91.0429 (4)1.3199 (3)0.85511 (7)0.0701 (6)
H9B1.14201.26230.86910.105*
H9C1.02481.42730.86310.105*
H9A1.10251.32320.83340.105*
C100.8314 (3)0.7426 (2)0.81616 (4)0.0361 (3)
C110.7740 (3)0.6775 (2)0.78333 (4)0.0369 (3)
C120.9415 (4)0.6641 (3)0.76038 (4)0.0491 (4)
H121.08280.70090.76520.059*
C130.8968 (4)0.5954 (3)0.73032 (5)0.0582 (5)
H131.00800.58750.71480.070*
C140.6894 (5)0.5390 (3)0.72342 (5)0.0623 (6)
H140.66090.49220.70330.075*
C150.5228 (4)0.5511 (3)0.74619 (6)0.0621 (6)
H150.38310.51120.74150.075*
C160.5637 (3)0.6229 (3)0.77623 (5)0.0479 (4)
H160.45070.63410.79140.057*
C170.2826 (3)0.9126 (3)0.95157 (4)0.0477 (4)
C180.3653 (4)0.9719 (2)0.98356 (4)0.0475 (4)
C190.5728 (5)0.9336 (3)0.99530 (5)0.0605 (5)
H190.66850.87070.98300.073*
C200.6362 (6)0.9909 (4)1.02587 (6)0.0791 (8)
H200.77460.96531.03420.095*
C210.4942 (7)1.0852 (4)1.04379 (6)0.0831 (9)
H210.53791.12351.06410.100*
C220.2893 (6)1.1233 (4)1.03201 (6)0.0788 (8)
H220.19421.18651.04430.095*
C230.2242 (5)1.0674 (3)1.00179 (5)0.0606 (6)
H230.08561.09390.99360.073*
U11U22U33U12U13U23
O10.0844 (11)0.0392 (6)0.0433 (7)−0.0017 (7)0.0146 (7)−0.0098 (5)
O20.0874 (11)0.0392 (6)0.0392 (6)−0.0010 (7)0.0204 (7)−0.0044 (5)
O30.0562 (8)0.0416 (6)0.0396 (6)0.0110 (6)0.0062 (6)0.0031 (5)
O40.0521 (7)0.0434 (6)0.0424 (6)0.0123 (6)0.0078 (6)−0.0030 (5)
O50.0523 (7)0.0552 (7)0.0311 (5)0.0076 (6)0.0072 (5)−0.0005 (5)
O60.0528 (8)0.1047 (14)0.0508 (8)0.0200 (10)−0.0035 (7)−0.0178 (9)
O70.0390 (6)0.0500 (6)0.0298 (5)0.0027 (5)0.0007 (4)−0.0102 (5)
O80.0401 (6)0.0607 (8)0.0424 (6)0.0043 (6)−0.0024 (5)−0.0143 (6)
C10.0598 (10)0.0410 (8)0.0299 (7)0.0052 (8)0.0020 (8)−0.0058 (7)
C20.0439 (8)0.0417 (8)0.0307 (7)0.0037 (7)0.0010 (7)−0.0056 (6)
C30.0413 (8)0.0388 (8)0.0275 (7)0.0060 (7)−0.0009 (6)−0.0032 (6)
C40.0408 (8)0.0491 (9)0.0286 (7)0.0049 (8)0.0027 (6)−0.0056 (7)
C50.0541 (10)0.0506 (9)0.0360 (8)−0.0012 (9)0.0097 (7)−0.0050 (7)
C60.0780 (15)0.0425 (9)0.0523 (10)0.0011 (10)0.0217 (11)−0.0001 (8)
C70.0545 (10)0.0393 (8)0.0435 (9)0.0008 (9)0.0076 (8)−0.0036 (7)
C80.0701 (15)0.0739 (14)0.0559 (12)0.0172 (13)−0.0006 (12)−0.0003 (11)
C90.0634 (14)0.0671 (14)0.0800 (15)−0.0100 (13)0.0069 (12)−0.0134 (13)
C100.0408 (8)0.0361 (7)0.0315 (7)0.0021 (7)0.0025 (7)−0.0039 (6)
C110.0454 (9)0.0364 (7)0.0290 (6)0.0051 (7)0.0004 (6)−0.0020 (6)
C120.0515 (10)0.0567 (10)0.0391 (8)0.0000 (9)0.0066 (8)−0.0065 (8)
C130.0734 (14)0.0667 (12)0.0346 (8)0.0088 (12)0.0122 (9)−0.0097 (9)
C140.0805 (15)0.0693 (13)0.0370 (8)0.0155 (13)−0.0122 (10)−0.0208 (9)
C150.0572 (12)0.0734 (14)0.0558 (11)0.0064 (12)−0.0127 (10)−0.0247 (11)
C160.0473 (10)0.0549 (10)0.0414 (8)0.0027 (9)−0.0010 (8)−0.0117 (8)
C170.0512 (11)0.0564 (10)0.0355 (8)0.0069 (9)0.0068 (8)0.0003 (8)
C180.0607 (11)0.0502 (9)0.0315 (7)0.0008 (9)0.0058 (8)0.0047 (7)
C190.0694 (13)0.0703 (13)0.0420 (9)0.0067 (13)−0.0031 (10)0.0033 (9)
C200.091 (2)0.0973 (19)0.0493 (11)−0.0043 (17)−0.0210 (13)0.0079 (13)
C210.123 (3)0.0871 (18)0.0391 (10)−0.017 (2)−0.0067 (14)−0.0085 (12)
C220.114 (2)0.0735 (15)0.0488 (11)−0.0001 (17)0.0131 (15)−0.0166 (12)
C230.0725 (14)0.0620 (12)0.0473 (10)0.0087 (12)0.0082 (10)−0.0061 (9)
O1—C11.382 (2)C8—H8A0.9600
O1—C71.437 (2)C9—H9B0.9600
O2—C21.412 (2)C9—H9C0.9600
O2—C71.426 (2)C9—H9A0.9600
O3—C31.397 (2)C10—C111.492 (2)
O3—C61.445 (3)C11—C161.384 (3)
O4—C41.410 (2)C11—C121.389 (3)
O4—C11.432 (3)C12—C131.386 (3)
O5—C171.346 (2)C12—H120.9300
O5—C51.439 (2)C13—C141.371 (4)
O6—C171.197 (3)C13—H130.9300
O7—C101.362 (2)C14—C151.378 (4)
O7—C31.4328 (17)C14—H140.9300
O8—C101.194 (2)C15—C161.392 (3)
C1—C21.528 (2)C15—H150.9300
C1—H10.9800C16—H160.9300
C2—C31.523 (3)C17—C181.489 (3)
C2—H20.9800C18—C191.383 (3)
C3—C41.551 (2)C18—C231.387 (3)
C4—C51.555 (3)C19—C201.395 (3)
C4—H40.9800C19—H190.9300
C5—C61.502 (3)C20—C211.378 (5)
C5—H50.9800C20—H200.9300
C6—H6B0.9700C21—C221.369 (5)
C6—H6A0.9700C21—H210.9300
C7—C91.503 (3)C22—C231.381 (3)
C7—C81.505 (3)C22—H220.9300
C8—H8C0.9600C23—H230.9300
C8—H8B0.9600
C1—O1—C7109.27 (13)C7—C8—H8A109.5
C2—O2—C7109.65 (13)H8C—C8—H8A109.5
C3—O3—C6107.35 (16)H8B—C8—H8A109.5
C4—O4—C1110.09 (14)C7—C9—H9B109.5
C17—O5—C5116.50 (16)C7—C9—H9C109.5
C10—O7—C3118.02 (13)H9B—C9—H9C109.5
O1—C1—O4110.15 (17)C7—C9—H9A109.5
O1—C1—C2105.39 (15)H9B—C9—H9A109.5
O4—C1—C2106.30 (14)H9C—C9—H9A109.5
O1—C1—H1111.6O8—C10—O7124.12 (14)
O4—C1—H1111.6O8—C10—C11125.24 (15)
C2—C1—H1111.6O7—C10—C11110.64 (14)
O2—C2—C3111.52 (14)C16—C11—C12120.26 (16)
O2—C2—C1102.53 (14)C16—C11—C10121.59 (15)
C3—C2—C1103.82 (16)C12—C11—C10118.05 (17)
O2—C2—H2112.7C13—C12—C11119.6 (2)
C3—C2—H2112.7C13—C12—H12120.2
C1—C2—H2112.7C11—C12—H12120.2
O3—C3—O7110.60 (13)C14—C13—C12120.3 (2)
O3—C3—C2110.03 (14)C14—C13—H13119.9
O7—C3—C2115.89 (13)C12—C13—H13119.9
O3—C3—C4107.55 (14)C13—C14—C15120.39 (18)
O7—C3—C4107.02 (13)C13—C14—H14119.8
C2—C3—C4105.26 (13)C15—C14—H14119.8
O4—C4—C3107.09 (15)C14—C15—C16120.0 (2)
O4—C4—C5114.09 (13)C14—C15—H15120.0
C3—C4—C5103.45 (14)C16—C15—H15120.0
O4—C4—H4110.6C11—C16—C15119.44 (19)
C3—C4—H4110.6C11—C16—H16120.3
C5—C4—H4110.6C15—C16—H16120.3
O5—C5—C6107.33 (18)O6—C17—O5123.76 (18)
O5—C5—C4109.90 (15)O6—C17—C18124.54 (19)
C6—C5—C4102.30 (15)O5—C17—C18111.69 (17)
O5—C5—H5112.3C19—C18—C23120.3 (2)
C6—C5—H5112.3C19—C18—C17122.40 (19)
C4—C5—H5112.3C23—C18—C17117.3 (2)
O3—C6—C5105.23 (16)C18—C19—C20118.9 (3)
O3—C6—H6B110.7C18—C19—H19120.5
C5—C6—H6B110.7C20—C19—H19120.5
O3—C6—H6A110.7C21—C20—C19120.2 (3)
C5—C6—H6A110.7C21—C20—H20119.9
H6B—C6—H6A108.8C19—C20—H20119.9
O2—C7—O1106.09 (14)C22—C21—C20120.7 (2)
O2—C7—C9111.09 (19)C22—C21—H21119.7
O1—C7—C9107.87 (18)C20—C21—H21119.7
O2—C7—C8107.70 (18)C21—C22—C23119.8 (3)
O1—C7—C8110.62 (18)C21—C22—H22120.1
C9—C7—C8113.3 (2)C23—C22—H22120.1
C7—C8—H8C109.5C22—C23—C18120.1 (3)
C7—C8—H8B109.5C22—C23—H23120.0
H8C—C8—H8B109.5C18—C23—H23120.0
C7—O1—C1—O4−93.88 (18)O5—C5—C6—O3−81.08 (19)
C7—O1—C1—C220.4 (2)C4—C5—C6—O334.6 (2)
C4—O4—C1—O1141.46 (13)C2—O2—C7—O1−11.8 (2)
C4—O4—C1—C227.76 (18)C2—O2—C7—C9105.2 (2)
C7—O2—C2—C3133.74 (17)C2—O2—C7—C8−130.29 (19)
C7—O2—C2—C123.2 (2)C1—O1—C7—O2−6.4 (2)
O1—C1—C2—O2−26.6 (2)C1—O1—C7—C9−125.5 (2)
O4—C1—C2—O290.33 (18)C1—O1—C7—C8110.2 (2)
O1—C1—C2—C3−142.79 (15)C3—O7—C10—O8−7.7 (3)
O4—C1—C2—C3−25.87 (18)C3—O7—C10—C11171.87 (13)
C6—O3—C3—O7−91.18 (17)O8—C10—C11—C16159.8 (2)
C6—O3—C3—C2139.50 (15)O7—C10—C11—C16−19.8 (2)
C6—O3—C3—C425.35 (17)O8—C10—C11—C12−16.5 (3)
C10—O7—C3—O3−66.81 (19)O7—C10—C11—C12163.94 (17)
C10—O7—C3—C259.3 (2)C16—C11—C12—C13−0.1 (3)
C10—O7—C3—C4176.32 (14)C10—C11—C12—C13176.24 (18)
O2—C2—C3—O3149.85 (14)C11—C12—C13—C14−0.9 (3)
C1—C2—C3—O3−100.44 (16)C12—C13—C14—C150.5 (4)
O2—C2—C3—O723.5 (2)C13—C14—C15—C160.9 (4)
C1—C2—C3—O7133.17 (15)C12—C11—C16—C151.5 (3)
O2—C2—C3—C4−94.54 (16)C10—C11—C16—C15−174.7 (2)
C1—C2—C3—C415.16 (17)C14—C15—C16—C11−1.9 (4)
C1—O4—C4—C3−17.61 (17)C5—O5—C17—O62.7 (3)
C1—O4—C4—C596.22 (18)C5—O5—C17—C18−178.13 (16)
O3—C3—C4—O4117.80 (14)O6—C17—C18—C19177.9 (2)
O7—C3—C4—O4−123.34 (14)O5—C17—C18—C19−1.3 (3)
C2—C3—C4—O40.50 (16)O6—C17—C18—C23−1.5 (3)
O3—C3—C4—C5−3.04 (17)O5—C17—C18—C23179.36 (19)
O7—C3—C4—C5115.82 (15)C23—C18—C19—C200.8 (4)
C2—C3—C4—C5−120.34 (15)C17—C18—C19—C20−178.5 (2)
C17—O5—C5—C6−161.55 (18)C18—C19—C20—C21−0.6 (4)
C17—O5—C5—C487.9 (2)C19—C20—C21—C220.4 (5)
O4—C4—C5—O5−21.2 (2)C20—C21—C22—C23−0.4 (5)
C3—C4—C5—O594.79 (16)C21—C22—C23—C180.6 (4)
O4—C4—C5—C6−134.95 (18)C19—C18—C23—C22−0.8 (4)
C3—C4—C5—C6−18.98 (19)C17—C18—C23—C22178.6 (2)
C3—O3—C6—C5−38.6 (2)
D—H···AD—HH···AD···AD—H···A
C2—H2···O6i0.982.553.2793 (17)131
C4—H4···O8ii0.982.593.4882 (16)153
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C2—H2⋯O6i0.982.553.2793 (17)131
C4—H4⋯O8ii0.982.593.4882 (16)153

Symmetry codes: (i) ; (ii) .

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