Literature DB >> 21587924

(3R,3aS,6R,6aR)-3-(1-Nitro-eth-yl)perhydro-furo[3,2-b]furan-3,6-diol.

Jing-Yu Zhang1, Jing Yang.   

Abstract

The mol-ecule of the title compound, C(8)H(13)NO(6), a sucrose derivative, consists of two fused tetra-hydro-furan rings having the cis arrangement at the ring junctions, giving a V-shaped mol-ecule. An intra-molecular O-H⋯O inter-action occurs. Inter-molecular O-H⋯O hydrogen bonds help to stabilize the crystal structure.

Entities:  

Year:  2010        PMID: 21587924      PMCID: PMC3007024          DOI: 10.1107/S1600536810022774

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of sucrose and its derivatives, see: Chang et al. (2001 ▶); Liu et al. (2004 ▶); Stutz et al. (1999 ▶).

Experimental

Crystal data

C8H13NO6 M = 219.19 Monoclinic, a = 6.959 (4) Å b = 5.525 (3) Å c = 12.384 (6) Å β = 97.077 (7)° V = 472.5 (4) Å3 Z = 2 Mo Kα radiation μ = 0.13 mm−1 T = 298 K 0.42 × 0.23 × 0.14 mm

Data collection

Siemens SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.946, T max = 0.982 2416 measured reflections 935 independent reflections 743 reflections with I > 2σ(I) R int = 0.059

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.129 S = 0.98 932 reflections 137 parameters 1 restraint H-atom parameters constrained Δρmax = 0.21 e Å−3 Δρmin = −0.19 e Å−3 Data collection: SMART (Siemens, 1996 ▶); cell refinement: SAINT (Siemens, 1996 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810022774/jh2141sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810022774/jh2141Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H13NO6F(000) = 232
Mr = 219.19Dx = 1.541 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
a = 6.959 (4) ÅCell parameters from 895 reflections
b = 5.525 (3) Åθ = 3.0–22.5°
c = 12.384 (6) ŵ = 0.13 mm1
β = 97.077 (7)°T = 298 K
V = 472.5 (4) Å3Colorless, needlelike
Z = 20.42 × 0.23 × 0.14 mm
Siemens SMART CCD area-detector diffractometer935 independent reflections
Radiation source: fine-focus sealed tube743 reflections with I > 2σ(I)
graphiteRint = 0.059
phi and ω scansθmax = 25.0°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −4→8
Tmin = 0.946, Tmax = 0.982k = −6→6
2416 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.129H-atom parameters constrained
S = 0.98w = 1/[σ2(Fo2) + (0.0843P)2] where P = (Fo2 + 2Fc2)/3
932 reflections(Δ/σ)max < 0.001
137 parametersΔρmax = 0.21 e Å3
1 restraintΔρmin = −0.19 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.9397 (6)0.4876 (9)0.8645 (3)0.0565 (11)
O10.3548 (4)0.4642 (5)0.61605 (19)0.0468 (7)
O20.5198 (4)−0.0131 (5)0.7607 (2)0.0485 (7)
O30.3353 (5)−0.0495 (6)0.55654 (18)0.0586 (9)
H30.3836−0.17130.58650.088*
O40.7338 (4)0.5239 (6)0.6667 (2)0.0475 (8)
H40.66960.51920.60660.071*
O51.0171 (6)0.6770 (9)0.8438 (3)0.0869 (13)
O61.0297 (6)0.3057 (9)0.8937 (3)0.0867 (12)
C10.4230 (5)0.3930 (7)0.7261 (3)0.0402 (10)
H10.37530.50170.77950.048*
C20.3545 (6)0.1339 (7)0.7386 (3)0.0419 (9)
H20.27520.12390.79860.050*
C30.2290 (7)0.0763 (8)0.6291 (3)0.0469 (10)
H3A0.1108−0.01110.64070.056*
C40.1837 (6)0.3261 (9)0.5835 (3)0.0512 (11)
H4A0.15580.32090.50490.061*
H4B0.07320.39490.61330.061*
C50.6784 (6)0.1117 (8)0.7223 (4)0.0463 (10)
H5A0.68220.07850.64560.056*
H5B0.80010.06080.76250.056*
C60.6445 (5)0.3804 (7)0.7401 (3)0.0390 (9)
C70.7219 (5)0.4776 (9)0.8547 (3)0.0454 (10)
H70.67490.64400.85960.055*
C80.6571 (6)0.3377 (10)0.9479 (3)0.0553 (12)
H8A0.70020.17300.94500.083*
H8B0.51840.34130.94290.083*
H8C0.71150.40941.01540.083*
U11U22U33U12U13U23
N10.056 (2)0.072 (3)0.0384 (18)0.008 (2)−0.0049 (16)−0.008 (2)
O10.0563 (16)0.0408 (16)0.0409 (14)0.0072 (14)−0.0031 (12)0.0095 (13)
O20.0592 (17)0.0359 (16)0.0496 (15)0.0079 (14)0.0034 (13)0.0026 (14)
O30.099 (2)0.0404 (17)0.0355 (14)0.0131 (17)0.0040 (15)0.0019 (14)
O40.0544 (16)0.0548 (19)0.0330 (13)−0.0059 (15)0.0037 (12)−0.0004 (13)
O50.072 (2)0.102 (3)0.081 (3)−0.026 (3)−0.012 (2)0.000 (2)
O60.069 (2)0.099 (3)0.090 (3)0.029 (2)0.001 (2)−0.007 (3)
C10.051 (2)0.039 (2)0.0301 (18)0.010 (2)0.0039 (16)0.0002 (16)
C20.047 (2)0.043 (2)0.0353 (19)0.004 (2)0.0038 (16)0.0008 (18)
C30.057 (2)0.042 (2)0.041 (2)−0.003 (2)0.0034 (18)0.0019 (18)
C40.052 (3)0.054 (3)0.044 (2)0.003 (2)−0.0067 (18)−0.001 (2)
C50.051 (2)0.042 (2)0.046 (2)0.007 (2)0.0061 (18)−0.0064 (19)
C60.050 (2)0.038 (2)0.0289 (19)−0.0013 (18)0.0054 (16)−0.0012 (15)
C70.052 (2)0.048 (2)0.0360 (18)0.008 (2)0.0031 (16)−0.002 (2)
C80.070 (3)0.064 (3)0.033 (2)0.006 (3)0.0090 (18)0.0003 (19)
N1—O61.215 (6)C2—H20.9800
N1—O51.219 (6)C3—C41.509 (6)
N1—C71.506 (5)C3—H3A0.9800
O1—C41.430 (5)C4—H4A0.9700
O1—C11.442 (4)C4—H4B0.9700
O2—C21.408 (5)C5—C61.523 (6)
O2—C51.431 (5)C5—H5A0.9700
O3—C31.415 (5)C5—H5B0.9700
O3—H30.8200C6—C71.550 (5)
O4—C61.407 (5)C7—C81.504 (6)
O4—H40.8200C7—H70.9800
C1—C21.523 (6)C8—H8A0.9600
C1—C61.531 (5)C8—H8B0.9600
C1—H10.9800C8—H8C0.9600
C2—C31.552 (5)
O6—N1—O5123.2 (4)O1—C4—H4B110.8
O6—N1—C7118.1 (5)C3—C4—H4B110.8
O5—N1—C7118.7 (4)H4A—C4—H4B108.9
C4—O1—C1106.6 (3)O2—C5—C6106.4 (3)
C2—O2—C5107.6 (3)O2—C5—H5A110.5
C3—O3—H3109.5C6—C5—H5A110.5
C6—O4—H4109.5O2—C5—H5B110.5
O1—C1—C2106.4 (3)C6—C5—H5B110.5
O1—C1—C6109.2 (3)H5A—C5—H5B108.6
C2—C1—C6105.6 (3)O4—C6—C5111.5 (3)
O1—C1—H1111.8O4—C6—C1114.8 (3)
C2—C1—H1111.8C5—C6—C1101.5 (3)
C6—C1—H1111.8O4—C6—C7105.3 (3)
O2—C2—C1107.7 (3)C5—C6—C7115.3 (3)
O2—C2—C3114.2 (3)C1—C6—C7108.6 (3)
C1—C2—C3104.7 (3)C8—C7—N1110.5 (3)
O2—C2—H2110.0C8—C7—C6114.9 (4)
C1—C2—H2110.0N1—C7—C6108.6 (3)
C3—C2—H2110.0C8—C7—H7107.5
O3—C3—C4108.2 (3)N1—C7—H7107.5
O3—C3—C2111.9 (3)C6—C7—H7107.5
C4—C3—C2102.0 (3)C7—C8—H8A109.5
O3—C3—H3A111.4C7—C8—H8B109.5
C4—C3—H3A111.4H8A—C8—H8B109.5
C2—C3—H3A111.4C7—C8—H8C109.5
O1—C4—C3104.7 (3)H8A—C8—H8C109.5
O1—C4—H4A110.8H8B—C8—H8C109.5
C3—C4—H4A110.8
C4—O1—C1—C227.7 (4)O2—C5—C6—C785.8 (4)
C4—O1—C1—C6141.2 (3)O1—C1—C6—O424.1 (4)
C5—O2—C2—C1−22.0 (4)C2—C1—C6—O4138.1 (3)
C5—O2—C2—C393.8 (4)O1—C1—C6—C5−96.3 (3)
O1—C1—C2—O2117.5 (3)C2—C1—C6—C517.7 (3)
C6—C1—C2—O21.5 (4)O1—C1—C6—C7141.7 (3)
O1—C1—C2—C3−4.4 (4)C2—C1—C6—C7−104.3 (4)
C6—C1—C2—C3−120.4 (3)O6—N1—C7—C840.8 (5)
O2—C2—C3—O3−20.6 (5)O5—N1—C7—C8−138.7 (4)
C1—C2—C3—O396.9 (4)O6—N1—C7—C6−86.2 (4)
O2—C2—C3—C4−136.1 (4)O5—N1—C7—C694.4 (5)
C1—C2—C3—C4−18.6 (4)O4—C6—C7—C8−175.5 (3)
C1—O1—C4—C3−40.5 (4)C5—C6—C7—C8−52.1 (5)
O3—C3—C4—O1−82.4 (4)C1—C6—C7—C861.0 (5)
C2—C3—C4—O135.8 (4)O4—C6—C7—N1−51.2 (4)
C2—O2—C5—C634.2 (4)C5—C6—C7—N172.2 (4)
O2—C5—C6—O4−154.1 (3)C1—C6—C7—N1−174.7 (3)
O2—C5—C6—C1−31.3 (4)
D—H···AD—HH···AD···AD—H···A
O3—H3···O1i0.822.062.785 (5)147
O4—H4···O3ii0.822.052.777 (4)147
O4—H4···O10.822.232.655 (4)113
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3⋯O1i0.822.062.785 (5)147
O4—H4⋯O3ii0.822.052.777 (4)147
O4—H4⋯O10.822.232.655 (4)113

Symmetry codes: (i) ; (ii) .

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